Result of FASTA (omim) for
pFN21AE3995
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3995, 283 aa
1>>>pF1KE3995 283 - 283 aa - 283 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1539+/-0.000295; mu= 16.8531+/- 0.018
mean_var=75.6321+/-15.202, 0's: 0 Z-trim(118.9): 93 B-trim: 0 in 0/54
Lambda= 0.147476
statistics sampled from 32183 (32285) to 32183 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.379), width: 16
Scan time: 5.860
The best scores are: opt bits E(85289)
NP_849142 (OMIM: 609099) F-box only protein 27 [Ho ( 283) 2015 437.5 1.4e-122
XP_016881779 (OMIM: 609099) PREDICTED: F-box only ( 249) 1703 371.0 1.2e-102
NP_079183 (OMIM: 609094) F-box only protein 17 iso ( 278) 1157 254.9 1.2e-67
NP_680474 (OMIM: 609094) F-box only protein 17 iso ( 287) 1157 254.9 1.3e-67
XP_005263505 (OMIM: 605647) PREDICTED: F-box only ( 293) 676 152.6 8.2e-37
XP_011539534 (OMIM: 605647) PREDICTED: F-box only ( 293) 676 152.6 8.2e-37
XP_005263506 (OMIM: 605647) PREDICTED: F-box only ( 293) 676 152.6 8.2e-37
XP_005263508 (OMIM: 605647) PREDICTED: F-box only ( 293) 676 152.6 8.2e-37
XP_016856496 (OMIM: 605647) PREDICTED: F-box only ( 293) 676 152.6 8.2e-37
XP_006710634 (OMIM: 605647) PREDICTED: F-box only ( 293) 676 152.6 8.2e-37
NP_060908 (OMIM: 605647) F-box only protein 6 [Hom ( 293) 676 152.6 8.2e-37
NP_036300 (OMIM: 607112) F-box only protein 2 [Hom ( 296) 664 150.0 4.9e-36
NP_001014765 (OMIM: 609111) F-box only protein 44 ( 255) 604 137.2 3e-32
XP_016858332 (OMIM: 609111) PREDICTED: F-box only ( 255) 604 137.2 3e-32
NP_001291720 (OMIM: 609111) F-box only protein 44 ( 255) 604 137.2 3e-32
XP_006711108 (OMIM: 609111) PREDICTED: F-box only ( 255) 604 137.2 3e-32
NP_149438 (OMIM: 609111) F-box only protein 44 iso ( 255) 604 137.2 3e-32
NP_001001414 (OMIM: 615901) F-box only protein 50 ( 275) 283 68.9 1.2e-11
XP_016858333 (OMIM: 609111) PREDICTED: F-box only ( 224) 150 40.6 0.0033
NP_904319 (OMIM: 609111) F-box only protein 44 iso ( 224) 150 40.6 0.0033
NP_001291719 (OMIM: 609111) F-box only protein 44 ( 224) 150 40.6 0.0033
NP_904320 (OMIM: 609111) F-box only protein 44 iso ( 224) 150 40.6 0.0033
XP_006711106 (OMIM: 609111) PREDICTED: F-box only ( 256) 150 40.6 0.0036
XP_005263594 (OMIM: 609111) PREDICTED: F-box only ( 256) 150 40.6 0.0036
XP_016858331 (OMIM: 609111) PREDICTED: F-box only ( 256) 150 40.6 0.0036
XP_011540737 (OMIM: 609111) PREDICTED: F-box only ( 256) 150 40.6 0.0036
XP_005263593 (OMIM: 609111) PREDICTED: F-box only ( 256) 150 40.6 0.0036
NP_001317284 (OMIM: 609111) F-box only protein 44 ( 256) 150 40.6 0.0036
NP_001245140 (OMIM: 608519) F-box only protein 16 ( 280) 146 39.8 0.007
NP_758954 (OMIM: 608519) F-box only protein 16 iso ( 292) 146 39.8 0.0073
XP_011525208 (OMIM: 615901) PREDICTED: F-box only ( 195) 143 39.0 0.0083
>>NP_849142 (OMIM: 609099) F-box only protein 27 [Homo s (283 aa)
initn: 2015 init1: 2015 opt: 2015 Z-score: 2321.7 bits: 437.5 E(85289): 1.4e-122
Smith-Waterman score: 2015; 100.0% identity (100.0% similar) in 283 aa overlap (1-283:1-283)
10 20 30 40 50 60
pF1KE3 MGASVSRGRAARVPAPEPEPEEALDLSQLPPELLLVVLSHVPPRTLLGRCRQVCRGWRAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_849 MGASVSRGRAARVPAPEPEPEEALDLSQLPPELLLVVLSHVPPRTLLGRCRQVCRGWRAL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 VDGQALWLLILARDHGATGRALLHLARSCQSPARNARPCPLGRFCARRPIGRNLIRNPCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_849 VDGQALWLLILARDHGATGRALLHLARSCQSPARNARPCPLGRFCARRPIGRNLIRNPCG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 QEGLRKWMVQHGGDGWVVEENRTTVPGAPSQTCFVTSFSWCCKKQVLDLEEEGLWPELLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_849 QEGLRKWMVQHGGDGWVVEENRTTVPGAPSQTCFVTSFSWCCKKQVLDLEEEGLWPELLD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 SGRIEICVSDWWGARHDSGCMYRLLVQLLDANQTVLDKFSAVPDPIPQWNNNACLHVTHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_849 SGRIEICVSDWWGARHDSGCMYRLLVQLLDANQTVLDKFSAVPDPIPQWNNNACLHVTHV
190 200 210 220 230 240
250 260 270 280
pF1KE3 FSNIKMGVRFVSFEHRGQDTQFWAGHYGARVTNSSVIVRVRLS
:::::::::::::::::::::::::::::::::::::::::::
NP_849 FSNIKMGVRFVSFEHRGQDTQFWAGHYGARVTNSSVIVRVRLS
250 260 270 280
>>XP_016881779 (OMIM: 609099) PREDICTED: F-box only prot (249 aa)
initn: 1703 init1: 1703 opt: 1703 Z-score: 1963.7 bits: 371.0 E(85289): 1.2e-102
Smith-Waterman score: 1703; 100.0% identity (100.0% similar) in 236 aa overlap (1-236:1-236)
10 20 30 40 50 60
pF1KE3 MGASVSRGRAARVPAPEPEPEEALDLSQLPPELLLVVLSHVPPRTLLGRCRQVCRGWRAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGASVSRGRAARVPAPEPEPEEALDLSQLPPELLLVVLSHVPPRTLLGRCRQVCRGWRAL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 VDGQALWLLILARDHGATGRALLHLARSCQSPARNARPCPLGRFCARRPIGRNLIRNPCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VDGQALWLLILARDHGATGRALLHLARSCQSPARNARPCPLGRFCARRPIGRNLIRNPCG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 QEGLRKWMVQHGGDGWVVEENRTTVPGAPSQTCFVTSFSWCCKKQVLDLEEEGLWPELLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QEGLRKWMVQHGGDGWVVEENRTTVPGAPSQTCFVTSFSWCCKKQVLDLEEEGLWPELLD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 SGRIEICVSDWWGARHDSGCMYRLLVQLLDANQTVLDKFSAVPDPIPQWNNNACLHVTHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGRIEICVSDWWGARHDSGCMYRLLVQLLDANQTVLDKFSAVPDPIPQWNNNACLHNYSR
190 200 210 220 230 240
250 260 270 280
pF1KE3 FSNIKMGVRFVSFEHRGQDTQFWAGHYGARVTNSSVIVRVRLS
XP_016 ELSPPPKEK
>>NP_079183 (OMIM: 609094) F-box only protein 17 isoform (278 aa)
initn: 856 init1: 856 opt: 1157 Z-score: 1335.2 bits: 254.9 E(85289): 1.2e-67
Smith-Waterman score: 1157; 57.7% identity (79.0% similar) in 286 aa overlap (1-283:1-278)
10 20 30 40 50 60
pF1KE3 MGASVSRGRAARVPAPEPEPEEALDLSQLPPELLLVVLSHVPPRTLLGRCRQVCRGWRAL
::: .:: :.:: .: ::: ::::::. ::::::::.:. ::: :::.:: .
NP_079 MGARLSR---RRLPA---DPSLALD--ALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDI
10 20 30 40 50
70 80 90 100 110
pF1KE3 VDGQALWLLILARDHGATGRALLHLARSC--QSPARNARP-CPLGRFCARRPIGRNLIRN
::: ..::: ::::..: :::: .:. : .. .. : : :.:.: : :.::::: :
NP_079 VDGPTVWLLQLARDRSAEGRALYAVAQRCLPSNEDKEEFPLCALARYCLRAPFGRNLIFN
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 PCGQEGLRKWMVQHGGDGWVVEENRTTVPGAPSQTCFVTSFSWCCKKQVLDLEEEGLWPE
::..:.: : :.:::.::..:.: : :::::::::::::: :: :.:..:: ::.: :
NP_079 SCGEQGFRGWEVEHGGNGWAIEKNLTPVPGAPSQTCFVTSFEWCSKRQLVDLVMEGVWQE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 LLDSGRIEICVSDWWGARHDSGCMYRLLVQLLDANQTVLDKFSAVPDPIPQWNNNACLHV
::::..:::::.::::::.. ::.:.: :.:::. . . :::: :::. ::.. .: .:
NP_079 LLDSAQIEICVADWWGARENCGCVYQLRVRLLDVYEKEVVKFSASPDPVLQWTERGCRQV
180 190 200 210 220 230
240 250 260 270 280
pF1KE3 THVFSNIKMGVRFVSFEHRGQDTQFWAGHYGARVTNSSVIVRVRLS
.:::.:. :.:.::::. :.:.. :.::::: ::.::: ::.:::
NP_079 SHVFTNFGKGIRYVSFEQYGRDVSSWVGHYGALVTHSSVRVRIRLS
240 250 260 270
>>NP_680474 (OMIM: 609094) F-box only protein 17 isoform (287 aa)
initn: 879 init1: 856 opt: 1157 Z-score: 1335.0 bits: 254.9 E(85289): 1.3e-67
Smith-Waterman score: 1157; 57.7% identity (79.0% similar) in 286 aa overlap (1-283:10-287)
10 20 30 40 50
pF1KE3 MGASVSRGRAARVPAPEPEPEEALDLSQLPPELLLVVLSHVPPRTLLGRCR
::: .:: :.:: .: ::: ::::::. ::::::::.:. :::
NP_680 MKQGLWLLEMGARLSR---RRLPA---DPSLALD--ALPPELLVQVLSHVPPRSLVTRCR
10 20 30 40 50
60 70 80 90 100
pF1KE3 QVCRGWRALVDGQALWLLILARDHGATGRALLHLARSC--QSPARNARP-CPLGRFCARR
:::.:: .::: ..::: ::::..: :::: .:. : .. .. : : :.:.: :
NP_680 PVCRAWRDIVDGPTVWLLQLARDRSAEGRALYAVAQRCLPSNEDKEEFPLCALARYCLRA
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE3 PIGRNLIRNPCGQEGLRKWMVQHGGDGWVVEENRTTVPGAPSQTCFVTSFSWCCKKQVLD
:.::::: : ::..:.: : :.:::.::..:.: : :::::::::::::: :: :.:..:
NP_680 PFGRNLIFNSCGEQGFRGWEVEHGGNGWAIEKNLTPVPGAPSQTCFVTSFEWCSKRQLVD
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE3 LEEEGLWPELLDSGRIEICVSDWWGARHDSGCMYRLLVQLLDANQTVLDKFSAVPDPIPQ
: ::.: :::::..:::::.::::::.. ::.:.: :.:::. . . :::: :::. :
NP_680 LVMEGVWQELLDSAQIEICVADWWGARENCGCVYQLRVRLLDVYEKEVVKFSASPDPVLQ
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE3 WNNNACLHVTHVFSNIKMGVRFVSFEHRGQDTQFWAGHYGARVTNSSVIVRVRLS
:.. .: .:.:::.:. :.:.::::. :.:.. :.::::: ::.::: ::.:::
NP_680 WTERGCRQVSHVFTNFGKGIRYVSFEQYGRDVSSWVGHYGALVTHSSVRVRIRLS
240 250 260 270 280
>>XP_005263505 (OMIM: 605647) PREDICTED: F-box only prot (293 aa)
initn: 684 init1: 450 opt: 676 Z-score: 781.8 bits: 152.6 E(85289): 8.2e-37
Smith-Waterman score: 676; 40.8% identity (64.0% similar) in 272 aa overlap (18-283:4-262)
10 20 30 40 50
pF1KE3 MGASVSRGRAARVPAPEPEPEEALD-LSQLPPELLLVVLSHVPPRTLLGRCRQVCRGWRA
:. . ::: ...:: ..:: ...::: : :: :: :: ::
XP_005 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRD
10 20 30 40
60 70 80 90 100 110
pF1KE3 LVDGQALWLLILARDHGATGRALLHLARSCQSPARNARPCPLGRFCARRPIGRNLIRNPC
:.: ..:: :. : .... ..:. . . : : . :::.::::
XP_005 LIDLMTLWKRKCLRE----G----FITKDWDQPVADWKI-----FYFLRSLHRNLLRNPC
50 60 70 80 90
120 130 140 150 160 170
pF1KE3 GQEGLRKWMVQ-HGGDGWVVEE----NRTTVPGAPSQTCFVTSFSWCCKKQVLDLEEEGL
..: . :... .::: : :: . : : . ::::. : :.:..:: ::
XP_005 AEEDMFAWQIDFNGGDRWKVESLPGAHGTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGY
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE3 WPELLDSGRIEICVSDWWGARHDSGCMYRLLVQLLDANQTVLDKFSAVPDPIPQWNNNAC
: ::::. : .: :.::..:: : :: :.: ::: .:. :: .: : : :::: .
XP_005 WEELLDTFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTIQQWNNATW
160 170 180 190 200 210
240 250 260 270 280
pF1KE3 LHVTHVFSNIKMGVRFVSFEHRGQDTQFWAGHYGARVTNSSVIVRVRLS
.:...::. :::.. :.: :.:::.::: :: ::::::..: ...
XP_005 TEVSYTFSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPG
220 230 240 250 260 270
XP_005 QKHGQEEAAQSPYRAVVQIF
280 290
>>XP_011539534 (OMIM: 605647) PREDICTED: F-box only prot (293 aa)
initn: 684 init1: 450 opt: 676 Z-score: 781.8 bits: 152.6 E(85289): 8.2e-37
Smith-Waterman score: 676; 40.8% identity (64.0% similar) in 272 aa overlap (18-283:4-262)
10 20 30 40 50
pF1KE3 MGASVSRGRAARVPAPEPEPEEALD-LSQLPPELLLVVLSHVPPRTLLGRCRQVCRGWRA
:. . ::: ...:: ..:: ...::: : :: :: :: ::
XP_011 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRD
10 20 30 40
60 70 80 90 100 110
pF1KE3 LVDGQALWLLILARDHGATGRALLHLARSCQSPARNARPCPLGRFCARRPIGRNLIRNPC
:.: ..:: :. : .... ..:. . . : : . :::.::::
XP_011 LIDLMTLWKRKCLRE----G----FITKDWDQPVADWKI-----FYFLRSLHRNLLRNPC
50 60 70 80 90
120 130 140 150 160 170
pF1KE3 GQEGLRKWMVQ-HGGDGWVVEE----NRTTVPGAPSQTCFVTSFSWCCKKQVLDLEEEGL
..: . :... .::: : :: . : : . ::::. : :.:..:: ::
XP_011 AEEDMFAWQIDFNGGDRWKVESLPGAHGTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGY
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE3 WPELLDSGRIEICVSDWWGARHDSGCMYRLLVQLLDANQTVLDKFSAVPDPIPQWNNNAC
: ::::. : .: :.::..:: : :: :.: ::: .:. :: .: : : :::: .
XP_011 WEELLDTFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTIQQWNNATW
160 170 180 190 200 210
240 250 260 270 280
pF1KE3 LHVTHVFSNIKMGVRFVSFEHRGQDTQFWAGHYGARVTNSSVIVRVRLS
.:...::. :::.. :.: :.:::.::: :: ::::::..: ...
XP_011 TEVSYTFSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPG
220 230 240 250 260 270
XP_011 QKHGQEEAAQSPYRAVVQIF
280 290
>>XP_005263506 (OMIM: 605647) PREDICTED: F-box only prot (293 aa)
initn: 684 init1: 450 opt: 676 Z-score: 781.8 bits: 152.6 E(85289): 8.2e-37
Smith-Waterman score: 676; 40.8% identity (64.0% similar) in 272 aa overlap (18-283:4-262)
10 20 30 40 50
pF1KE3 MGASVSRGRAARVPAPEPEPEEALD-LSQLPPELLLVVLSHVPPRTLLGRCRQVCRGWRA
:. . ::: ...:: ..:: ...::: : :: :: :: ::
XP_005 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRD
10 20 30 40
60 70 80 90 100 110
pF1KE3 LVDGQALWLLILARDHGATGRALLHLARSCQSPARNARPCPLGRFCARRPIGRNLIRNPC
:.: ..:: :. : .... ..:. . . : : . :::.::::
XP_005 LIDLMTLWKRKCLRE----G----FITKDWDQPVADWKI-----FYFLRSLHRNLLRNPC
50 60 70 80 90
120 130 140 150 160 170
pF1KE3 GQEGLRKWMVQ-HGGDGWVVEE----NRTTVPGAPSQTCFVTSFSWCCKKQVLDLEEEGL
..: . :... .::: : :: . : : . ::::. : :.:..:: ::
XP_005 AEEDMFAWQIDFNGGDRWKVESLPGAHGTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGY
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE3 WPELLDSGRIEICVSDWWGARHDSGCMYRLLVQLLDANQTVLDKFSAVPDPIPQWNNNAC
: ::::. : .: :.::..:: : :: :.: ::: .:. :: .: : : :::: .
XP_005 WEELLDTFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTIQQWNNATW
160 170 180 190 200 210
240 250 260 270 280
pF1KE3 LHVTHVFSNIKMGVRFVSFEHRGQDTQFWAGHYGARVTNSSVIVRVRLS
.:...::. :::.. :.: :.:::.::: :: ::::::..: ...
XP_005 TEVSYTFSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPG
220 230 240 250 260 270
XP_005 QKHGQEEAAQSPYRAVVQIF
280 290
>>XP_005263508 (OMIM: 605647) PREDICTED: F-box only prot (293 aa)
initn: 684 init1: 450 opt: 676 Z-score: 781.8 bits: 152.6 E(85289): 8.2e-37
Smith-Waterman score: 676; 40.8% identity (64.0% similar) in 272 aa overlap (18-283:4-262)
10 20 30 40 50
pF1KE3 MGASVSRGRAARVPAPEPEPEEALD-LSQLPPELLLVVLSHVPPRTLLGRCRQVCRGWRA
:. . ::: ...:: ..:: ...::: : :: :: :: ::
XP_005 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRD
10 20 30 40
60 70 80 90 100 110
pF1KE3 LVDGQALWLLILARDHGATGRALLHLARSCQSPARNARPCPLGRFCARRPIGRNLIRNPC
:.: ..:: :. : .... ..:. . . : : . :::.::::
XP_005 LIDLMTLWKRKCLRE----G----FITKDWDQPVADWKI-----FYFLRSLHRNLLRNPC
50 60 70 80 90
120 130 140 150 160 170
pF1KE3 GQEGLRKWMVQ-HGGDGWVVEE----NRTTVPGAPSQTCFVTSFSWCCKKQVLDLEEEGL
..: . :... .::: : :: . : : . ::::. : :.:..:: ::
XP_005 AEEDMFAWQIDFNGGDRWKVESLPGAHGTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGY
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE3 WPELLDSGRIEICVSDWWGARHDSGCMYRLLVQLLDANQTVLDKFSAVPDPIPQWNNNAC
: ::::. : .: :.::..:: : :: :.: ::: .:. :: .: : : :::: .
XP_005 WEELLDTFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTIQQWNNATW
160 170 180 190 200 210
240 250 260 270 280
pF1KE3 LHVTHVFSNIKMGVRFVSFEHRGQDTQFWAGHYGARVTNSSVIVRVRLS
.:...::. :::.. :.: :.:::.::: :: ::::::..: ...
XP_005 TEVSYTFSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPG
220 230 240 250 260 270
XP_005 QKHGQEEAAQSPYRAVVQIF
280 290
>>XP_016856496 (OMIM: 605647) PREDICTED: F-box only prot (293 aa)
initn: 684 init1: 450 opt: 676 Z-score: 781.8 bits: 152.6 E(85289): 8.2e-37
Smith-Waterman score: 676; 40.8% identity (64.0% similar) in 272 aa overlap (18-283:4-262)
10 20 30 40 50
pF1KE3 MGASVSRGRAARVPAPEPEPEEALD-LSQLPPELLLVVLSHVPPRTLLGRCRQVCRGWRA
:. . ::: ...:: ..:: ...::: : :: :: :: ::
XP_016 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRD
10 20 30 40
60 70 80 90 100 110
pF1KE3 LVDGQALWLLILARDHGATGRALLHLARSCQSPARNARPCPLGRFCARRPIGRNLIRNPC
:.: ..:: :. : .... ..:. . . : : . :::.::::
XP_016 LIDLMTLWKRKCLRE----G----FITKDWDQPVADWKI-----FYFLRSLHRNLLRNPC
50 60 70 80 90
120 130 140 150 160 170
pF1KE3 GQEGLRKWMVQ-HGGDGWVVEE----NRTTVPGAPSQTCFVTSFSWCCKKQVLDLEEEGL
..: . :... .::: : :: . : : . ::::. : :.:..:: ::
XP_016 AEEDMFAWQIDFNGGDRWKVESLPGAHGTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGY
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE3 WPELLDSGRIEICVSDWWGARHDSGCMYRLLVQLLDANQTVLDKFSAVPDPIPQWNNNAC
: ::::. : .: :.::..:: : :: :.: ::: .:. :: .: : : :::: .
XP_016 WEELLDTFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTIQQWNNATW
160 170 180 190 200 210
240 250 260 270 280
pF1KE3 LHVTHVFSNIKMGVRFVSFEHRGQDTQFWAGHYGARVTNSSVIVRVRLS
.:...::. :::.. :.: :.:::.::: :: ::::::..: ...
XP_016 TEVSYTFSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPG
220 230 240 250 260 270
XP_016 QKHGQEEAAQSPYRAVVQIF
280 290
>>XP_006710634 (OMIM: 605647) PREDICTED: F-box only prot (293 aa)
initn: 684 init1: 450 opt: 676 Z-score: 781.8 bits: 152.6 E(85289): 8.2e-37
Smith-Waterman score: 676; 40.8% identity (64.0% similar) in 272 aa overlap (18-283:4-262)
10 20 30 40 50
pF1KE3 MGASVSRGRAARVPAPEPEPEEALD-LSQLPPELLLVVLSHVPPRTLLGRCRQVCRGWRA
:. . ::: ...:: ..:: ...::: : :: :: :: ::
XP_006 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRD
10 20 30 40
60 70 80 90 100 110
pF1KE3 LVDGQALWLLILARDHGATGRALLHLARSCQSPARNARPCPLGRFCARRPIGRNLIRNPC
:.: ..:: :. : .... ..:. . . : : . :::.::::
XP_006 LIDLMTLWKRKCLRE----G----FITKDWDQPVADWKI-----FYFLRSLHRNLLRNPC
50 60 70 80 90
120 130 140 150 160 170
pF1KE3 GQEGLRKWMVQ-HGGDGWVVEE----NRTTVPGAPSQTCFVTSFSWCCKKQVLDLEEEGL
..: . :... .::: : :: . : : . ::::. : :.:..:: ::
XP_006 AEEDMFAWQIDFNGGDRWKVESLPGAHGTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGY
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE3 WPELLDSGRIEICVSDWWGARHDSGCMYRLLVQLLDANQTVLDKFSAVPDPIPQWNNNAC
: ::::. : .: :.::..:: : :: :.: ::: .:. :: .: : : :::: .
XP_006 WEELLDTFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTIQQWNNATW
160 170 180 190 200 210
240 250 260 270 280
pF1KE3 LHVTHVFSNIKMGVRFVSFEHRGQDTQFWAGHYGARVTNSSVIVRVRLS
.:...::. :::.. :.: :.:::.::: :: ::::::..: ...
XP_006 TEVSYTFSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPG
220 230 240 250 260 270
XP_006 QKHGQEEAAQSPYRAVVQIF
280 290
283 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 08:08:22 2016 done: Sun Nov 6 08:08:23 2016
Total Scan time: 5.860 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]