FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3991, 295 aa
  1>>>pF1KE3991 295 - 295 aa - 295 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2067+/-0.000934; mu= 15.5862+/- 0.056
 mean_var=62.6947+/-13.003, 0's: 0 Z-trim(104.1): 20  B-trim: 313 in 1/49
 Lambda= 0.161979
 statistics sampled from 7742 (7746) to 7742 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.619), E-opt: 0.2 (0.238), width:  16
 Scan time:  1.980

The best scores are:                                      opt bits E(32554)
CCDS671.1 ASB17 gene_id:127247|Hs108|chr1          ( 295) 1983 472.2 2.1e-133


>>CCDS671.1 ASB17 gene_id:127247|Hs108|chr1               (295 aa)
 initn: 1983 init1: 1983 opt: 1983  Z-score: 2508.5  bits: 472.2 E(32554): 2.1e-133
Smith-Waterman score: 1983; 100.0% identity (100.0% similar) in 295 aa overlap (1-295:1-295)

               10        20        30        40        50        60
pF1KE3 MSKSTKLCGKTSCPRSNIFCNLLDKIVKRPSLQFLGQWGYHCYEPRIYRSLAKILRYVDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MSKSTKLCGKTSCPRSNIFCNLLDKIVKRPSLQFLGQWGYHCYEPRIYRSLAKILRYVDL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 DGFDALLTDYIAFVEKSGYRFEVSFNLDFTEICVNTILYWVFARKGNPDFVELLLKKTKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 DGFDALLTDYIAFVEKSGYRFEVSFNLDFTEICVNTILYWVFARKGNPDFVELLLKKTKD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 YVQDRSCNLALIWRTFTPVYCPSPLSGITPLFYVAQTRQSNIFKILLQYGILEREKNPIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 YVQDRSCNLALIWRTFTPVYCPSPLSGITPLFYVAQTRQSNIFKILLQYGILEREKNPIN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 IVLTIVLYPSRVRVMVDRELADIHEDAKTCLVLCSRVLSVISVKEIKTQLSLGRHPIISN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 IVLTIVLYPSRVRVMVDRELADIHEDAKTCLVLCSRVLSVISVKEIKTQLSLGRHPIISN
              190       200       210       220       230       240

              250       260       270       280       290     
pF1KE3 WFDYIPSTRYKDPCELLHLCRLTIRNQLLTNNMLPDGIFSLLIPARLQNYLNLEI
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 WFDYIPSTRYKDPCELLHLCRLTIRNQLLTNNMLPDGIFSLLIPARLQNYLNLEI
              250       260       270       280       290     




295 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:10:20 2016 done: Sun Nov  6 08:10:20 2016
 Total Scan time:  1.980 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]