FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3987, 326 aa
  1>>>pF1KE3987 326 - 326 aa - 326 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8048+/-0.00084; mu= 13.6301+/- 0.050
 mean_var=78.5775+/-16.350, 0's: 0 Z-trim(108.3): 66  B-trim: 482 in 1/48
 Lambda= 0.144686
 statistics sampled from 10081 (10147) to 10081 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.312), width:  16
 Scan time:  2.110

The best scores are:                                      opt bits E(32554)
CCDS12218.1 FBXL12 gene_id:54850|Hs108|chr19       ( 326) 2209 470.5 8.3e-133
CCDS82287.1 FBXL12 gene_id:54850|Hs108|chr19       ( 273) 1841 393.6 9.5e-110


>>CCDS12218.1 FBXL12 gene_id:54850|Hs108|chr19            (326 aa)
 initn: 2209 init1: 2209 opt: 2209  Z-score: 2497.8  bits: 470.5 E(32554): 8.3e-133
Smith-Waterman score: 2209; 100.0% identity (100.0% similar) in 326 aa overlap (1-326:1-326)

               10        20        30        40        50        60
pF1KE3 MATLVELPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MATLVELPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 HLLRRYMASRLHSLRMGGYLFSGSQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HLLRRYMASRLHSLRMGGYLFSGSQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPIT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 SLPSTLRTLELHSCEISMAWLHKQQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SLPSTLRTLELHSCEISMAWLHKQQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 LVLGGTYRVTETGLDAGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LVLGGTYRVTETGLDAGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 SAPGLAVLEGMPALESLCLQGPLVTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SAPGLAVLEGMPALESLCLQGPLVTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAE
              250       260       270       280       290       300

              310       320      
pF1KE3 KILCKGLPHCMVIVRACPKESMDWWM
       ::::::::::::::::::::::::::
CCDS12 KILCKGLPHCMVIVRACPKESMDWWM
              310       320      

>>CCDS82287.1 FBXL12 gene_id:54850|Hs108|chr19            (273 aa)
 initn: 1841 init1: 1841 opt: 1841  Z-score: 2083.8  bits: 393.6 E(32554): 9.5e-110
Smith-Waterman score: 1841; 100.0% identity (100.0% similar) in 273 aa overlap (54-326:1-273)

            30        40        50        60        70        80   
pF1KE3 RIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWHLLRRYMASRLHSLRMGGYLFSG
                                     ::::::::::::::::::::::::::::::
CCDS82                               MRPKVMWHLLRRYMASRLHSLRMGGYLFSG
                                             10        20        30

            90       100       110       120       130       140   
pF1KE3 SQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPITSLPSTLRTLELHSCEISMAWLHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPITSLPSTLRTLELHSCEISMAWLHK
               40        50        60        70        80        90

           150       160       170       180       190       200   
pF1KE3 QQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRSLVLGGTYRVTETGLDAGLQELSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 QQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRSLVLGGTYRVTETGLDAGLQELSY
              100       110       120       130       140       150

           210       220       230       240       250       260   
pF1KE3 LQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGLSAPGLAVLEGMPALESLCLQGPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGLSAPGLAVLEGMPALESLCLQGPL
              160       170       180       190       200       210

           270       280       290       300       310       320   
pF1KE3 VTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAEKILCKGLPHCMVIVRACPKESMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAEKILCKGLPHCMVIVRACPKESMD
              220       230       240       250       260       270

          
pF1KE3 WWM
       :::
CCDS82 WWM
          




326 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:11:58 2016 done: Sun Nov  6 08:11:58 2016
 Total Scan time:  2.110 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]