Result of FASTA (ccds) for
pFN21AE3985
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3985, 389 aa
1>>>pF1KE3985 389 - 389 aa - 389 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0007+/-0.000948; mu= 12.1898+/- 0.057
mean_var=66.8486+/-13.382, 0's: 0 Z-trim(104.3): 54 B-trim: 0 in 0/48
Lambda= 0.156866
statistics sampled from 7785 (7839) to 7785 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.614), E-opt: 0.2 (0.241), width: 16
Scan time: 2.790
The best scores are: opt bits E(32554)
CCDS6048.1 KCTD9 gene_id:54793|Hs108|chr8 ( 389) 2582 593.6 1e-169
CCDS10475.1 KCTD5 gene_id:54442|Hs108|chr16 ( 234) 322 82.1 5.9e-16
CCDS32728.1 KCTD2 gene_id:23510|Hs108|chr17 ( 263) 321 81.8 7.6e-16
CCDS74855.1 KCTD17 gene_id:79734|Hs108|chr22 ( 220) 288 74.4 1.1e-13
CCDS13940.2 KCTD17 gene_id:79734|Hs108|chr22 ( 297) 288 74.4 1.5e-13
CCDS74854.1 KCTD17 gene_id:79734|Hs108|chr22 ( 321) 288 74.4 1.6e-13
>>CCDS6048.1 KCTD9 gene_id:54793|Hs108|chr8 (389 aa)
initn: 2582 init1: 2582 opt: 2582 Z-score: 3160.4 bits: 593.6 E(32554): 1e-169
Smith-Waterman score: 2582; 100.0% identity (100.0% similar) in 389 aa overlap (1-389:1-389)
10 20 30 40 50 60
pF1KE3 MRRVTLFLNGSPKNGKVVAVYGTLSDLLSVASSKLGIKATSVYNGKGGLIDDIALIRDDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MRRVTLFLNGSPKNGKVVAVYGTLSDLLSVASSKLGIKATSVYNGKGGLIDDIALIRDDD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 VLFVCEGEPFIDPQTDSKPPEGLLGFHTDWLTLNVGGRYFTTTRSTLVNKEPDSMLAHMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 VLFVCEGEPFIDPQTDSKPPEGLLGFHTDWLTLNVGGRYFTTTRSTLVNKEPDSMLAHMF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 KDKGVWGNKQDHRGAFLIDRSPEYFEPILNYLRHGQLIVNDGINLLGVLEEARFFGIDSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 KDKGVWGNKQDHRGAFLIDRSPEYFEPILNYLRHGQLIVNDGINLLGVLEEARFFGIDSL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 IEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQGLNFSGADLSRLDLRYINF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 IEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQGLNFSGADLSRLDLRYINF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 KMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGVKMLCSNAEGASLKLCNFEDPSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 KMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGVKMLCSNAEGASLKLCNFEDPSG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 LKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLKNCNLRGATLAGTDLENCDLSGCDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLKNCNLRGATLAGTDLENCDLSGCDL
310 320 330 340 350 360
370 380
pF1KE3 QEANLRGSNVKGAIFEEMLTPLHMSQSVR
:::::::::::::::::::::::::::::
CCDS60 QEANLRGSNVKGAIFEEMLTPLHMSQSVR
370 380
>>CCDS10475.1 KCTD5 gene_id:54442|Hs108|chr16 (234 aa)
initn: 286 init1: 210 opt: 322 Z-score: 400.0 bits: 82.1 E(32554): 5.9e-16
Smith-Waterman score: 322; 42.4% identity (68.0% similar) in 125 aa overlap (85-209:40-161)
60 70 80 90 100 110
pF1KE3 LIRDDDVLFVCEGEPFIDPQTDSKPPEGLLGFHTDWLTLNVGGRYFTTTRSTLVNKEPDS
: . :. ::::: :: :::.:: ..: :
CCDS10 SPARGGIGAGLGGGLCRRCSAGLGALAQRPGSVSKWVRLNVGGTYFLTTRQTLC-RDPKS
10 20 30 40 50 60
120 130 140 150 160 170
pF1KE3 MLAHMFKDKGVWGNKQDHRGAFLIDRSPEYFEPILNYLRHGQLIVNDGINLLGVLEEARF
.: .. . . .:. ::.::::.: :: :.:::::::.:..: . ::::::.:
CCDS10 FLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEF
70 80 90 100 110 120
180 190 200 210 220 230
pF1KE3 FGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQGLNFSGADLSRLD
..: :::. .. :.. . .. :. :. : :
CCDS10 YNITSLIKLVKDKIRERDSKTSQVPV--KHVYRVLQCQEEELTQMVSTMSDGWKFEQLVS
130 140 150 160 170 180
240 250 260 270 280 290
pF1KE3 LRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGVKMLCSNAEGASLKLCN
CCDS10 IGSSYNYGNEDQAEFLCVVSKELHNTPYGTASEPSEKAKILQERGSRM
190 200 210 220 230
>>CCDS32728.1 KCTD2 gene_id:23510|Hs108|chr17 (263 aa)
initn: 262 init1: 262 opt: 321 Z-score: 397.9 bits: 81.8 E(32554): 7.6e-16
Smith-Waterman score: 321; 42.9% identity (70.7% similar) in 133 aa overlap (79-209:61-190)
50 60 70 80 90 100
pF1KE3 LIDDIALIRDDDVLFVCEGEPFIDPQTDSKPPE-GLLGFHTDWLTLNVGGRYFTTTRSTL
::: . : . :. ::::: ::.:::.::
CCDS32 PPSPRPAGPTPRGHGRPAAAVAQPLEPGPGPPERAGGGGAARWVRLNVGGTYFVTTRQTL
40 50 60 70 80 90
110 120 130 140 150 160
pF1KE3 VNKEPDSMLAHMF-KDKGVWGNKQDHRGAFLIDRSPEYFEPILNYLRHGQLIVNDGINLL
..:: :.: .. .. . .:. ::.::::.: :: :::::::::.::.. .
CCDS32 -GREPKSFLCRLCCQEDPELDSDKDETGAYLIDRDPTYFGPILNYLRHGKLIITKELAEE
100 110 120 130 140
170 180 190 200 210 220
pF1KE3 GVLEEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQGLNFS
::::::.:..: ::.. .. :.... ...:. :. : :
CCDS32 GVLEEAEFYNIASLVRLVKERIRDNENRTSQGPV--KHVYRVLQCQEEELTQMVSTMSDG
150 160 170 180 190 200
230 240 250 260 270 280
pF1KE3 GADLSRLDLRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGVKMLCSNAE
CCDS32 WKFEQLISIGSSYNYGNEDQAEFLCVVSRELNNSTNGIVIEPSEKAKILQERGSRM
210 220 230 240 250 260
>>CCDS74855.1 KCTD17 gene_id:79734|Hs108|chr22 (220 aa)
initn: 252 init1: 200 opt: 288 Z-score: 358.9 bits: 74.4 E(32554): 1.1e-13
Smith-Waterman score: 288; 40.2% identity (66.9% similar) in 127 aa overlap (76-198:14-134)
50 60 70 80 90 100
pF1KE3 KGGLIDDIALIRDDDVLFVCEGEPFIDPQTDSKPPEGLLGFHTD----WLTLNVGGRYFT
.. :: : : . :. ::::: :
CCDS74 MQTPRPAMRMEAGEAAPPAGAGGRAAGGWGKWVRLNVGGTVFL
10 20 30 40
110 120 130 140 150 160
pF1KE3 TTRSTLVNKEPDSMLAHMFKDKGVWGNKQDHRGAFLIDRSPEYFEPILNYLRHGQLIVND
:::.:: .: :.:... . . . ... :. ::.::::.: :: ::::.::::.:...
CCDS74 TTRQTLC-REQKSFLSRLCQGEELQSDR-DETGAYLIDRDPTYFGPILNFLRHGKLVLDK
50 60 70 80 90 100
170 180 190 200 210 220
pF1KE3 GINLLGVLEEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQ
. ::::::.:..: ::. ::. . .:..
CCDS74 DMAEEGVLEEAEFYNIGPLIR----IIKDRMEEKDYTVTQVPPKHVYRVLQCQEEELTQM
110 120 130 140 150
230 240 250 260 270 280
pF1KE3 GLNFSGADLSRLDLRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGVKML
CCDS74 VSTMSDGWRFEQLVNIGSSYNYGSEDQAEFLCVVSKELHSTPNGLSSESSRKTKLLQARG
160 170 180 190 200 210
>>CCDS13940.2 KCTD17 gene_id:79734|Hs108|chr22 (297 aa)
initn: 252 init1: 200 opt: 288 Z-score: 356.7 bits: 74.4 E(32554): 1.5e-13
Smith-Waterman score: 288; 40.2% identity (66.9% similar) in 127 aa overlap (76-198:14-134)
50 60 70 80 90 100
pF1KE3 KGGLIDDIALIRDDDVLFVCEGEPFIDPQTDSKPPEGLLGFHTD----WLTLNVGGRYFT
.. :: : : . :. ::::: :
CCDS13 MQTPRPAMRMEAGEAAPPAGAGGRAAGGWGKWVRLNVGGTVFL
10 20 30 40
110 120 130 140 150 160
pF1KE3 TTRSTLVNKEPDSMLAHMFKDKGVWGNKQDHRGAFLIDRSPEYFEPILNYLRHGQLIVND
:::.:: .: :.:... . . . ... :. ::.::::.: :: ::::.::::.:...
CCDS13 TTRQTLC-REQKSFLSRLCQGEELQSDR-DETGAYLIDRDPTYFGPILNFLRHGKLVLDK
50 60 70 80 90 100
170 180 190 200 210 220
pF1KE3 GINLLGVLEEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQ
. ::::::.:..: ::. ::. . .:..
CCDS13 DMAEEGVLEEAEFYNIGPLIR----IIKDRMEEKDYTVTQVPPKHVYRVLQCQEEELTQM
110 120 130 140 150
230 240 250 260 270 280
pF1KE3 GLNFSGADLSRLDLRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGVKML
CCDS13 VSTMSDGWRFEQLVNIGSSYNYGSEDQAEFLCVVSKELHSTPNGLSSESSRKTKSTEEQL
160 170 180 190 200 210
>>CCDS74854.1 KCTD17 gene_id:79734|Hs108|chr22 (321 aa)
initn: 252 init1: 200 opt: 288 Z-score: 356.1 bits: 74.4 E(32554): 1.6e-13
Smith-Waterman score: 288; 40.2% identity (66.9% similar) in 127 aa overlap (76-198:14-134)
50 60 70 80 90 100
pF1KE3 KGGLIDDIALIRDDDVLFVCEGEPFIDPQTDSKPPEGLLGFHTD----WLTLNVGGRYFT
.. :: : : . :. ::::: :
CCDS74 MQTPRPAMRMEAGEAAPPAGAGGRAAGGWGKWVRLNVGGTVFL
10 20 30 40
110 120 130 140 150 160
pF1KE3 TTRSTLVNKEPDSMLAHMFKDKGVWGNKQDHRGAFLIDRSPEYFEPILNYLRHGQLIVND
:::.:: .: :.:... . . . ... :. ::.::::.: :: ::::.::::.:...
CCDS74 TTRQTLC-REQKSFLSRLCQGEELQSDR-DETGAYLIDRDPTYFGPILNFLRHGKLVLDK
50 60 70 80 90 100
170 180 190 200 210 220
pF1KE3 GINLLGVLEEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQ
. ::::::.:..: ::. ::. . .:..
CCDS74 DMAEEGVLEEAEFYNIGPLIR----IIKDRMEEKDYTVTQVPPKHVYRVLQCQEEELTQM
110 120 130 140 150
230 240 250 260 270 280
pF1KE3 GLNFSGADLSRLDLRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGVKML
CCDS74 VSTMSDGWRFEQLVNIGSSYNYGSEDQAEFLCVVSKELHSTPNGLSSESSRKTKSTEEQL
160 170 180 190 200 210
389 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 08:20:38 2016 done: Sun Nov 6 08:20:38 2016
Total Scan time: 2.790 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]