Result of FASTA (ccds) for
pFN21AE3981
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3981, 257 aa
1>>>pF1KE3981 257 - 257 aa - 257 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6904+/-0.000738; mu= 12.4205+/- 0.044
mean_var=64.6432+/-12.921, 0's: 0 Z-trim(107.8): 64 B-trim: 58 in 2/52
Lambda= 0.159519
statistics sampled from 9740 (9806) to 9740 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.301), width: 16
Scan time: 2.110
The best scores are: opt bits E(32554)
CCDS11888.1 KCTD1 gene_id:284252|Hs108|chr18 ( 257) 1740 408.9 1.8e-114
CCDS46039.1 KCTD15 gene_id:79047|Hs108|chr19 ( 283) 1418 334.8 3.9e-92
CCDS12434.1 KCTD15 gene_id:79047|Hs108|chr19 ( 234) 1167 277.0 8e-75
CCDS2891.1 KCTD6 gene_id:200845|Hs108|chr3 ( 237) 359 91.1 7.7e-19
CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11 ( 260) 338 86.2 2.4e-17
CCDS9396.1 KCTD4 gene_id:386618|Hs108|chr13 ( 259) 288 74.7 6.9e-14
CCDS41889.1 KCNRG gene_id:283518|Hs108|chr13 ( 229) 253 66.7 1.6e-11
CCDS9424.1 KCNRG gene_id:283518|Hs108|chr13 ( 272) 253 66.7 1.9e-11
>>CCDS11888.1 KCTD1 gene_id:284252|Hs108|chr18 (257 aa)
initn: 1740 init1: 1740 opt: 1740 Z-score: 2168.8 bits: 408.9 E(32554): 1.8e-114
Smith-Waterman score: 1740; 100.0% identity (100.0% similar) in 257 aa overlap (1-257:1-257)
10 20 30 40 50 60
pF1KE3 MSRPLITRSPASPLNNQGIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPESRIGRLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSRPLITRSPASPLNNQGIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPESRIGRLF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 DGTEPIVLDSLKQHYFIDRDGQMFRYILNFLRTSKLLIPDDFKDYTLLYEEAKYFQLQPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DGTEPIVLDSLKQHYFIDRDGQMFRYILNFLRTSKLLIPDDFKDYTLLYEEAKYFQLQPM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LLEMERWKQDRETGRFSRPCECLVVRVAPDLGERITLSGDKSLIEEVFPEIGDVMCNSVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LLEMERWKQDRETGRFSRPCECLVVRVAPDLGERITLSGDKSLIEEVFPEIGDVMCNSVN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 AGWNHDSTHVIRFPLNGYCHLNSVQVLERLQQRGFEIVGSCGGGVDSSQFSEYVLRRELR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AGWNHDSTHVIRFPLNGYCHLNSVQVLERLQQRGFEIVGSCGGGVDSSQFSEYVLRRELR
190 200 210 220 230 240
250
pF1KE3 RTPRVPSVIRIKQEPLD
:::::::::::::::::
CCDS11 RTPRVPSVIRIKQEPLD
250
>>CCDS46039.1 KCTD15 gene_id:79047|Hs108|chr19 (283 aa)
initn: 1418 init1: 1418 opt: 1418 Z-score: 1767.6 bits: 334.8 E(32554): 3.9e-92
Smith-Waterman score: 1418; 79.8% identity (92.6% similar) in 257 aa overlap (1-257:27-283)
10 20 30
pF1KE3 MSRPLITRSPASPLNNQGIPTPAQLTKSNAPVHI
::: .::::.::: :::: :::::::::::::
CCDS46 MPHRKERPSGSSLHTHGSTGTAEGGNMSRLSLTRSPVSPLAAQGIPLPAQLTKSNAPVHI
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE3 DVGGHMYTSSLATLTKYPESRIGRLFDGTEPIVLDSLKQHYFIDRDGQMFRYILNFLRTS
::::::::::::::::::.:::.:::.::::::::::::::::::::..:::.:.:::::
CCDS46 DVGGHMYTSSLATLTKYPDSRISRLFNGTEPIVLDSLKQHYFIDRDGEIFRYVLSFLRTS
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE3 KLLIPDDFKDYTLLYEEAKYFQLQPMLLEMERWKQDRETGRFSRPCECLVVRVAPDLGER
:::.::::::..::::::.:.:::::. :.:::.:..: : :: :.::::::.::::::
CCDS46 KLLLPDDFKDFSLLYEEARYYQLQPMVRELERWQQEQEQRRRSRACDCLVVRVTPDLGER
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE3 ITLSGDKSLIEEVFPEIGDVMCNSVNAGWNHDSTHVIRFPLNGYCHLNSVQVLERLQQRG
:.:::.:.:::::::: :::::::::::::.: ::::::::::::.:::::::::: :::
CCDS46 IALSGEKALIEEVFPETGDVMCNSVNAGWNQDPTHVIRFPLNGYCRLNSVQVLERLFQRG
190 200 210 220 230 240
220 230 240 250
pF1KE3 FEIVGSCGGGVDSSQFSEYVLRRELRRTPRVPSVIRIKQEPLD
: ...:::::::::::::::: :: :: .:...::::::::
CCDS46 FSVAASCGGGVDSSQFSEYVLCREERRPQPTPTAVRIKQEPLD
250 260 270 280
>>CCDS12434.1 KCTD15 gene_id:79047|Hs108|chr19 (234 aa)
initn: 1167 init1: 1167 opt: 1167 Z-score: 1456.8 bits: 277.0 E(32554): 8e-75
Smith-Waterman score: 1167; 81.5% identity (94.1% similar) in 205 aa overlap (1-205:27-231)
10 20 30
pF1KE3 MSRPLITRSPASPLNNQGIPTPAQLTKSNAPVHI
::: .::::.::: :::: :::::::::::::
CCDS12 MPHRKERPSGSSLHTHGSTGTAEGGNMSRLSLTRSPVSPLAAQGIPLPAQLTKSNAPVHI
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE3 DVGGHMYTSSLATLTKYPESRIGRLFDGTEPIVLDSLKQHYFIDRDGQMFRYILNFLRTS
::::::::::::::::::.:::.:::.::::::::::::::::::::..:::.:.:::::
CCDS12 DVGGHMYTSSLATLTKYPDSRISRLFNGTEPIVLDSLKQHYFIDRDGEIFRYVLSFLRTS
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE3 KLLIPDDFKDYTLLYEEAKYFQLQPMLLEMERWKQDRETGRFSRPCECLVVRVAPDLGER
:::.::::::..::::::.:.:::::. :.:::.:..: : :: :.::::::.::::::
CCDS12 KLLLPDDFKDFSLLYEEARYYQLQPMVRELERWQQEQEQRRRSRACDCLVVRVTPDLGER
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE3 ITLSGDKSLIEEVFPEIGDVMCNSVNAGWNHDSTHVIRFPLNGYCHLNSVQVLERLQQRG
:.:::.:.:::::::: :::::::::::::.: ::::::::::::.:::::
CCDS12 IALSGEKALIEEVFPETGDVMCNSVNAGWNQDPTHVIRFPLNGYCRLNSVQDVL
190 200 210 220 230
220 230 240 250
pF1KE3 FEIVGSCGGGVDSSQFSEYVLRRELRRTPRVPSVIRIKQEPLD
>>CCDS2891.1 KCTD6 gene_id:200845|Hs108|chr3 (237 aa)
initn: 356 init1: 217 opt: 359 Z-score: 451.7 bits: 91.1 E(32554): 7.7e-19
Smith-Waterman score: 359; 33.7% identity (59.7% similar) in 196 aa overlap (31-217:13-205)
10 20 30 40 50 60
pF1KE3 MSRPLITRSPASPLNNQGIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPESRIGRLF
:: ..::::.::.::.:::.::.: .: .:
CCDS28 MDNGDWGYMMTDPVTLNVGGHLYTTSLTTLTRYPDSMLGAMF
10 20 30 40
70 80 90 100 110 120
pF1KE3 DGTEPIVLDSLKQHYFIDRDGQMFRYILNFLRTSKLLIPDDFKDYTLLYEEAKYFQLQPM
: : . : . .::::::: .:::.:::::::.: .: :::.. :: .:: ..:..:.
CCDS28 GGDFPTARDP-QGNYFIDRDGPLFRYVLNFLRTSELTLPLDFKEFDLLRKEADFYQIEPL
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE3 LLEMERWKQDRETGRFSRPCECLVVRVAPDLGERITLSGDKSLIEEVFPEIGDVMCNSVN
. .. : : . : .: .. ... . : . . . : .
CCDS28 IQCLNDPKPLYPMDTFEEVVELSSTRKLSKYSNPVAVIITQLTITTKVHSLLEGISNYFT
110 120 130 140 150 160
190 200 210 220 230
pF1KE3 AGWNH---DSTHV-IRFPLNGYCHLNS-----VQVLERLQQRGFEIVGSCGGGVDSSQFS
::. :. . : . : : .. :...: . ..:: :
CCDS28 K-WNKHMMDTRDCQVSFTF-GPCDYHQEVSLRVHLMEYITKQGFTIRNTRVHHMSERANE
170 180 190 200 210
240 250
pF1KE3 EYVLRRELRRTPRVPSVIRIKQEPLD
CCDS28 NTVEHNWTFCRLARKTDD
220 230
>>CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11 (260 aa)
initn: 338 init1: 208 opt: 338 Z-score: 424.9 bits: 86.2 E(32554): 2.4e-17
Smith-Waterman score: 338; 50.5% identity (82.1% similar) in 95 aa overlap (31-125:4-97)
10 20 30 40 50 60
pF1KE3 MSRPLITRSPASPLNNQGIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPESRIGRLF
:. ..:::..::.::::::..:.: .: .:
CCDS31 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMF
10 20 30
70 80 90 100 110 120
pF1KE3 DGTEPIVLDSLKQHYFIDRDGQMFRYILNFLRTSKLLIPDDFKDYTLLYEEAKYFQLQPM
.: : :: . . ::::::..:::::::::::.: .:.::... :: .:: ..:.::.
CCDS31 SGKMPTKRDS-QGNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPL
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 LLEMERWKQDRETGRFSRPCECLVVRVAPDLGERITLSGDKSLIEEVFPEIGDVMCNSVN
. ..
CCDS31 IEALQEKEVELSKAEKNAMLNITLNQRVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTS
100 110 120 130 140 150
>>CCDS9396.1 KCTD4 gene_id:386618|Hs108|chr13 (259 aa)
initn: 306 init1: 202 opt: 288 Z-score: 362.8 bits: 74.7 E(32554): 6.9e-14
Smith-Waterman score: 289; 31.9% identity (60.8% similar) in 204 aa overlap (34-222:37-235)
10 20 30 40 50 60
pF1KE3 PLITRSPASPLNNQGIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPESRIGRLFDGT
..:::..: .. ::::::.. . . .:
CCDS93 RREKEKEYEGKHNSLEDTDQGKNCKSTLMTLNVGGYLYITQKQTLTKYPDTFLEGIVNGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EPIVLDSLKQHYFIDRDGQMFRYILNFLRTSKLLIPDDFKDYTLLYEEAKYFQLQPMLLE
.:. :::::::: .::..:::::...::.:. :.. :: .::..:::. . :
CCDS93 ILCPFDA-DGHYFIDRDGLLFRHVLNFLRNGELLLPEGFRENQLLAQEAEFFQLKGLAEE
70 80 90 100 110 120
130 140 150 160
pF1KE3 ME-RWKQDRETGRFSRPCECLV-------VRV---APD----LGERITLSGDKSLIEEVF
.. ::.... : : . : .:. ::: . ::.: . . : . :
CCDS93 VKSRWEKEQLTPRETTFLEITDNHDRSQGLRIFCNAPDFISKIKSRIVLVSKSRL--DGF
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE3 PEIGDVMCNSVNAGWNHDSTHVIRFPLNGYCHLNSVQVLERLQQRGFEIVGSCGGGVDSS
:: .. : .. . : . :. :. . : .:: :. ... .. .::
CCDS93 PEEFSISSNIIQFKYFIKSENGTRLVLKEDNTF--VCTLETLKFEAIMMALKCGFRLLTS
190 200 210 220 230 240
230 240 250
pF1KE3 QFSEYVLRRELRRTPRVPSVIRIKQEPLD
CCDS93 LDCSKGSIVHSDALHFIK
250
>>CCDS41889.1 KCNRG gene_id:283518|Hs108|chr13 (229 aa)
initn: 260 init1: 169 opt: 253 Z-score: 320.1 bits: 66.7 E(32554): 1.6e-11
Smith-Waterman score: 253; 37.8% identity (76.7% similar) in 90 aa overlap (32-121:7-95)
10 20 30 40 50 60
pF1KE3 SRPLITRSPASPLNNQGIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPESRIGRLFD
: ..:::...:. ..:. ..: ::..:..:
CCDS41 MSSQELVTLNVGGKIFTTRFSTIKQFPASRLARMLD
10 20 30
70 80 90 100 110 120
pF1KE3 GTEPIVLDSLKQHYFIDRDGQMFRYILNFLRTSKLLIPDDFKDYTLLYEEAKYFQLQPML
: . . . . :.::::..: .::.:::: .::.: .:.:: : .:: ...:. ..
CCDS41 GRDQ-EFKMVGGQIFVDRDGDLFSFILDFLRTHQLLLPTEFSDYLRLQREALFYELRSLV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 LEMERWKQDRETGRFSRPCECLVVRVAPDLGERITLSGDKSLIEEVFPEIGDVMCNSVNA
CCDS41 DLLNPYLLQPRPALVEVHFLSRNTQAFFRVFGSCSKTIEMLTGRITVFTEQPSAPTWNGN
100 110 120 130 140 150
>>CCDS9424.1 KCNRG gene_id:283518|Hs108|chr13 (272 aa)
initn: 248 init1: 157 opt: 253 Z-score: 318.9 bits: 66.7 E(32554): 1.9e-11
Smith-Waterman score: 253; 37.8% identity (76.7% similar) in 90 aa overlap (32-121:7-95)
10 20 30 40 50 60
pF1KE3 SRPLITRSPASPLNNQGIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPESRIGRLFD
: ..:::...:. ..:. ..: ::..:..:
CCDS94 MSSQELVTLNVGGKIFTTRFSTIKQFPASRLARMLD
10 20 30
70 80 90 100 110 120
pF1KE3 GTEPIVLDSLKQHYFIDRDGQMFRYILNFLRTSKLLIPDDFKDYTLLYEEAKYFQLQPML
: . . . . :.::::..: .::.:::: .::.: .:.:: : .:: ...:. ..
CCDS94 GRDQ-EFKMVGGQIFVDRDGDLFSFILDFLRTHQLLLPTEFSDYLRLQREALFYELRSLV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 LEMERWKQDRETGRFSRPCECLVVRVAPDLGERITLSGDKSLIEEVFPEIGDVMCNSVNA
CCDS94 DLLNPYLLQPRPALVEVHFLSRNTQAFFRVFGSCSKTIEMLTGRITVFTEQPSAPTWNGN
100 110 120 130 140 150
257 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 08:23:11 2016 done: Sun Nov 6 08:23:11 2016
Total Scan time: 2.110 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]