Result of FASTA (omim) for
pFN21AE3973
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3973, 434 aa
1>>>pF1KE3973 434 - 434 aa - 434 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5667+/-0.000377; mu= 15.8303+/- 0.024
mean_var=65.6625+/-13.979, 0's: 0 Z-trim(112.3): 34 B-trim: 145 in 1/49
Lambda= 0.158276
statistics sampled from 21106 (21136) to 21106 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.248), width: 16
Scan time: 4.770
The best scores are: opt bits E(85289)
XP_016881093 (OMIM: 609093) PREDICTED: F-box only ( 434) 2976 688.6 8.3e-198
NP_689889 (OMIM: 609093) F-box only protein 15 iso ( 434) 2976 688.6 8.3e-198
XP_016881092 (OMIM: 609093) PREDICTED: F-box only ( 434) 2976 688.6 8.3e-198
NP_001136430 (OMIM: 609093) F-box only protein 15 ( 510) 2976 688.6 9.6e-198
XP_011524158 (OMIM: 609093) PREDICTED: F-box only ( 440) 1734 405.0 2e-112
XP_011524161 (OMIM: 609093) PREDICTED: F-box only ( 284) 1259 296.4 6.1e-80
XP_011524160 (OMIM: 609093) PREDICTED: F-box only ( 302) 1255 295.5 1.2e-79
XP_011524162 (OMIM: 609093) PREDICTED: F-box only ( 264) 1254 295.3 1.3e-79
XP_016860506 (OMIM: 607871) PREDICTED: F-box only ( 843) 142 41.6 0.0095
NP_079409 (OMIM: 607871) F-box only protein 11 iso ( 843) 142 41.6 0.0095
XP_016860505 (OMIM: 607871) PREDICTED: F-box only ( 870) 142 41.6 0.0098
>>XP_016881093 (OMIM: 609093) PREDICTED: F-box only prot (434 aa)
initn: 2976 init1: 2976 opt: 2976 Z-score: 3672.2 bits: 688.6 E(85289): 8.3e-198
Smith-Waterman score: 2976; 100.0% identity (100.0% similar) in 434 aa overlap (1-434:1-434)
10 20 30 40 50 60
pF1KE3 MPSEILLKIFSYLDAVSLLCTGCVSRRFYHLANDNFIWIGIYSTAFSPARSNWKFNSVEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPSEILLKIFSYLDAVSLLCTGCVSRRFYHLANDNFIWIGIYSTAFSPARSNWKFNSVEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 IAMSMSFLSVQDKEAGYWKKEYITKQIASVKAALADILKPVNPYTGLPVKTKEALRIFGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IAMSMSFLSVQDKEAGYWKKEYITKQIASVKAALADILKPVNPYTGLPVKTKEALRIFGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 GWAIILKEKGGKEYIMEHVDLSINDTSVTVIWYGKKWPCLASLSTLDLCGMTPVFTDWYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GWAIILKEKGGKEYIMEHVDLSINDTSVTVIWYGKKWPCLASLSTLDLCGMTPVFTDWYK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TPTKHRLRWHSLIAKYNLSHLTISTMIGCDRLIRIFCLHPGLLVGVWKKEEELAFVMANL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TPTKHRLRWHSLIAKYNLSHLTISTMIGCDRLIRIFCLHPGLLVGVWKKEEELAFVMANL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 HFHHLVERSTLGSATIPYELPPHSPFLDDSPEYGLHGYQLHVDLHSGGVFYLCGTFRNLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HFHHLVERSTLGSATIPYELPPHSPFLDDSPEYGLHGYQLHVDLHSGGVFYLCGTFRNLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 TKRGNIENGHVKLIVIHLKNNREHLPLIGKVGLSWKTDIFDGCIKSCSMMDVTLLDEHGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TKRGNIENGHVKLIVIHLKNNREHLPLIGKVGLSWKTDIFDGCIKSCSMMDVTLLDEHGK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 PFWCFSSPVCLRSPATPSDSSSFLGQTYNVDYVDAEGRVHVELVWIRETEEYLIVNLVLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PFWCFSSPVCLRSPATPSDSSSFLGQTYNVDYVDAEGRVHVELVWIRETEEYLIVNLVLY
370 380 390 400 410 420
430
pF1KE3 LSIAKINHWFGTEY
::::::::::::::
XP_016 LSIAKINHWFGTEY
430
>>NP_689889 (OMIM: 609093) F-box only protein 15 isoform (434 aa)
initn: 2976 init1: 2976 opt: 2976 Z-score: 3672.2 bits: 688.6 E(85289): 8.3e-198
Smith-Waterman score: 2976; 100.0% identity (100.0% similar) in 434 aa overlap (1-434:1-434)
10 20 30 40 50 60
pF1KE3 MPSEILLKIFSYLDAVSLLCTGCVSRRFYHLANDNFIWIGIYSTAFSPARSNWKFNSVEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 MPSEILLKIFSYLDAVSLLCTGCVSRRFYHLANDNFIWIGIYSTAFSPARSNWKFNSVEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 IAMSMSFLSVQDKEAGYWKKEYITKQIASVKAALADILKPVNPYTGLPVKTKEALRIFGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 IAMSMSFLSVQDKEAGYWKKEYITKQIASVKAALADILKPVNPYTGLPVKTKEALRIFGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 GWAIILKEKGGKEYIMEHVDLSINDTSVTVIWYGKKWPCLASLSTLDLCGMTPVFTDWYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 GWAIILKEKGGKEYIMEHVDLSINDTSVTVIWYGKKWPCLASLSTLDLCGMTPVFTDWYK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TPTKHRLRWHSLIAKYNLSHLTISTMIGCDRLIRIFCLHPGLLVGVWKKEEELAFVMANL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 TPTKHRLRWHSLIAKYNLSHLTISTMIGCDRLIRIFCLHPGLLVGVWKKEEELAFVMANL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 HFHHLVERSTLGSATIPYELPPHSPFLDDSPEYGLHGYQLHVDLHSGGVFYLCGTFRNLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 HFHHLVERSTLGSATIPYELPPHSPFLDDSPEYGLHGYQLHVDLHSGGVFYLCGTFRNLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 TKRGNIENGHVKLIVIHLKNNREHLPLIGKVGLSWKTDIFDGCIKSCSMMDVTLLDEHGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 TKRGNIENGHVKLIVIHLKNNREHLPLIGKVGLSWKTDIFDGCIKSCSMMDVTLLDEHGK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 PFWCFSSPVCLRSPATPSDSSSFLGQTYNVDYVDAEGRVHVELVWIRETEEYLIVNLVLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 PFWCFSSPVCLRSPATPSDSSSFLGQTYNVDYVDAEGRVHVELVWIRETEEYLIVNLVLY
370 380 390 400 410 420
430
pF1KE3 LSIAKINHWFGTEY
::::::::::::::
NP_689 LSIAKINHWFGTEY
430
>>XP_016881092 (OMIM: 609093) PREDICTED: F-box only prot (434 aa)
initn: 2976 init1: 2976 opt: 2976 Z-score: 3672.2 bits: 688.6 E(85289): 8.3e-198
Smith-Waterman score: 2976; 100.0% identity (100.0% similar) in 434 aa overlap (1-434:1-434)
10 20 30 40 50 60
pF1KE3 MPSEILLKIFSYLDAVSLLCTGCVSRRFYHLANDNFIWIGIYSTAFSPARSNWKFNSVEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPSEILLKIFSYLDAVSLLCTGCVSRRFYHLANDNFIWIGIYSTAFSPARSNWKFNSVEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 IAMSMSFLSVQDKEAGYWKKEYITKQIASVKAALADILKPVNPYTGLPVKTKEALRIFGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IAMSMSFLSVQDKEAGYWKKEYITKQIASVKAALADILKPVNPYTGLPVKTKEALRIFGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 GWAIILKEKGGKEYIMEHVDLSINDTSVTVIWYGKKWPCLASLSTLDLCGMTPVFTDWYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GWAIILKEKGGKEYIMEHVDLSINDTSVTVIWYGKKWPCLASLSTLDLCGMTPVFTDWYK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TPTKHRLRWHSLIAKYNLSHLTISTMIGCDRLIRIFCLHPGLLVGVWKKEEELAFVMANL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TPTKHRLRWHSLIAKYNLSHLTISTMIGCDRLIRIFCLHPGLLVGVWKKEEELAFVMANL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 HFHHLVERSTLGSATIPYELPPHSPFLDDSPEYGLHGYQLHVDLHSGGVFYLCGTFRNLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HFHHLVERSTLGSATIPYELPPHSPFLDDSPEYGLHGYQLHVDLHSGGVFYLCGTFRNLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 TKRGNIENGHVKLIVIHLKNNREHLPLIGKVGLSWKTDIFDGCIKSCSMMDVTLLDEHGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TKRGNIENGHVKLIVIHLKNNREHLPLIGKVGLSWKTDIFDGCIKSCSMMDVTLLDEHGK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 PFWCFSSPVCLRSPATPSDSSSFLGQTYNVDYVDAEGRVHVELVWIRETEEYLIVNLVLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PFWCFSSPVCLRSPATPSDSSSFLGQTYNVDYVDAEGRVHVELVWIRETEEYLIVNLVLY
370 380 390 400 410 420
430
pF1KE3 LSIAKINHWFGTEY
::::::::::::::
XP_016 LSIAKINHWFGTEY
430
>>NP_001136430 (OMIM: 609093) F-box only protein 15 isof (510 aa)
initn: 2976 init1: 2976 opt: 2976 Z-score: 3671.1 bits: 688.6 E(85289): 9.6e-198
Smith-Waterman score: 2976; 100.0% identity (100.0% similar) in 434 aa overlap (1-434:77-510)
10 20 30
pF1KE3 MPSEILLKIFSYLDAVSLLCTGCVSRRFYH
::::::::::::::::::::::::::::::
NP_001 SAGSAALRCHAGGGQHWESSFSCCSGFLDGMPSEILLKIFSYLDAVSLLCTGCVSRRFYH
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE3 LANDNFIWIGIYSTAFSPARSNWKFNSVEKIAMSMSFLSVQDKEAGYWKKEYITKQIASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LANDNFIWIGIYSTAFSPARSNWKFNSVEKIAMSMSFLSVQDKEAGYWKKEYITKQIASV
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE3 KAALADILKPVNPYTGLPVKTKEALRIFGLGWAIILKEKGGKEYIMEHVDLSINDTSVTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KAALADILKPVNPYTGLPVKTKEALRIFGLGWAIILKEKGGKEYIMEHVDLSINDTSVTV
170 180 190 200 210 220
160 170 180 190 200 210
pF1KE3 IWYGKKWPCLASLSTLDLCGMTPVFTDWYKTPTKHRLRWHSLIAKYNLSHLTISTMIGCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IWYGKKWPCLASLSTLDLCGMTPVFTDWYKTPTKHRLRWHSLIAKYNLSHLTISTMIGCD
230 240 250 260 270 280
220 230 240 250 260 270
pF1KE3 RLIRIFCLHPGLLVGVWKKEEELAFVMANLHFHHLVERSTLGSATIPYELPPHSPFLDDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLIRIFCLHPGLLVGVWKKEEELAFVMANLHFHHLVERSTLGSATIPYELPPHSPFLDDS
290 300 310 320 330 340
280 290 300 310 320 330
pF1KE3 PEYGLHGYQLHVDLHSGGVFYLCGTFRNLFTKRGNIENGHVKLIVIHLKNNREHLPLIGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEYGLHGYQLHVDLHSGGVFYLCGTFRNLFTKRGNIENGHVKLIVIHLKNNREHLPLIGK
350 360 370 380 390 400
340 350 360 370 380 390
pF1KE3 VGLSWKTDIFDGCIKSCSMMDVTLLDEHGKPFWCFSSPVCLRSPATPSDSSSFLGQTYNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGLSWKTDIFDGCIKSCSMMDVTLLDEHGKPFWCFSSPVCLRSPATPSDSSSFLGQTYNV
410 420 430 440 450 460
400 410 420 430
pF1KE3 DYVDAEGRVHVELVWIRETEEYLIVNLVLYLSIAKINHWFGTEY
::::::::::::::::::::::::::::::::::::::::::::
NP_001 DYVDAEGRVHVELVWIRETEEYLIVNLVLYLSIAKINHWFGTEY
470 480 490 500 510
>>XP_011524158 (OMIM: 609093) PREDICTED: F-box only prot (440 aa)
initn: 1734 init1: 1734 opt: 1734 Z-score: 2139.4 bits: 405.0 E(85289): 2e-112
Smith-Waterman score: 2332; 83.9% identity (83.9% similar) in 434 aa overlap (1-434:77-440)
10 20 30
pF1KE3 MPSEILLKIFSYLDAVSLLCTGCVSRRFYH
::::::::::::::::::::::::::::::
XP_011 SAGSAALRCHAGGGQHWESSFSCCSGFLDGMPSEILLKIFSYLDAVSLLCTGCVSRRFYH
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE3 LANDNFIWIGIYSTAFSPARSNWKFNSVEKIAMSMSFLSVQDKEAGYWKKEYITKQIASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LANDNFIWIGIYSTAFSPARSNWKFNSVEKIAMSMSFLSVQDKEAGYWKKEYITKQIASV
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE3 KAALADILKPVNPYTGLPVKTKEALRIFGLGWAIILKEKGGKEYIMEHVDLSINDTSVTV
::::::::::::::::::::::::::
XP_011 KAALADILKPVNPYTGLPVKTKEALR----------------------------------
170 180 190
160 170 180 190 200 210
pF1KE3 IWYGKKWPCLASLSTLDLCGMTPVFTDWYKTPTKHRLRWHSLIAKYNLSHLTISTMIGCD
::::::::::::::::::::::::
XP_011 ------------------------------------LRWHSLIAKYNLSHLTISTMIGCD
200 210
220 230 240 250 260 270
pF1KE3 RLIRIFCLHPGLLVGVWKKEEELAFVMANLHFHHLVERSTLGSATIPYELPPHSPFLDDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RLIRIFCLHPGLLVGVWKKEEELAFVMANLHFHHLVERSTLGSATIPYELPPHSPFLDDS
220 230 240 250 260 270
280 290 300 310 320 330
pF1KE3 PEYGLHGYQLHVDLHSGGVFYLCGTFRNLFTKRGNIENGHVKLIVIHLKNNREHLPLIGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PEYGLHGYQLHVDLHSGGVFYLCGTFRNLFTKRGNIENGHVKLIVIHLKNNREHLPLIGK
280 290 300 310 320 330
340 350 360 370 380 390
pF1KE3 VGLSWKTDIFDGCIKSCSMMDVTLLDEHGKPFWCFSSPVCLRSPATPSDSSSFLGQTYNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VGLSWKTDIFDGCIKSCSMMDVTLLDEHGKPFWCFSSPVCLRSPATPSDSSSFLGQTYNV
340 350 360 370 380 390
400 410 420 430
pF1KE3 DYVDAEGRVHVELVWIRETEEYLIVNLVLYLSIAKINHWFGTEY
::::::::::::::::::::::::::::::::::::::::::::
XP_011 DYVDAEGRVHVELVWIRETEEYLIVNLVLYLSIAKINHWFGTEY
400 410 420 430 440
>>XP_011524161 (OMIM: 609093) PREDICTED: F-box only prot (284 aa)
initn: 1258 init1: 1258 opt: 1259 Z-score: 1556.2 bits: 296.4 E(85289): 6.1e-80
Smith-Waterman score: 1259; 98.4% identity (98.4% similar) in 191 aa overlap (1-189:77-267)
10 20 30
pF1KE3 MPSEILLKIFSYLDAVSLLCTGCVSRRFYH
::::::::::::::::::::::::::::::
XP_011 SAGSAALRCHAGGGQHWESSFSCCSGFLDGMPSEILLKIFSYLDAVSLLCTGCVSRRFYH
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE3 LANDNFIWIGIYSTAFSPARSNWKFNSVEKIAMSMSFLSVQDKEAGYWKKEYITKQIASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LANDNFIWIGIYSTAFSPARSNWKFNSVEKIAMSMSFLSVQDKEAGYWKKEYITKQIASV
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE3 KAALADILKPVNPYTGLPVKTKEALRIFGLGWAIILKEKGGKEYIMEHVDLSINDTSVTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KAALADILKPVNPYTGLPVKTKEALRIFGLGWAIILKEKGGKEYIMEHVDLSINDTSVTV
170 180 190 200 210 220
160 170 180 190 200
pF1KE3 IWYGKKWPCLASLSTLDLCGMTPVFTDWYKTPTKHRLR--WHSLIAKYNLSHLTISTMIG
:::::::::::::::::::::::::::::::::::: : :
XP_011 IWYGKKWPCLASLSTLDLCGMTPVFTDWYKTPTKHRRRKNWLLLWQIFIFITLWRGAH
230 240 250 260 270 280
210 220 230 240 250 260
pF1KE3 CDRLIRIFCLHPGLLVGVWKKEEELAFVMANLHFHHLVERSTLGSATIPYELPPHSPFLD
>>XP_011524160 (OMIM: 609093) PREDICTED: F-box only prot (302 aa)
initn: 1254 init1: 1254 opt: 1255 Z-score: 1550.9 bits: 295.5 E(85289): 1.2e-79
Smith-Waterman score: 1255; 98.9% identity (98.9% similar) in 189 aa overlap (1-189:77-263)
10 20 30
pF1KE3 MPSEILLKIFSYLDAVSLLCTGCVSRRFYH
::::::::::::::::::::::::::::::
XP_011 SAGSAALRCHAGGGQHWESSFSCCSGFLDGMPSEILLKIFSYLDAVSLLCTGCVSRRFYH
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE3 LANDNFIWIGIYSTAFSPARSNWKFNSVEKIAMSMSFLSVQDKEAGYWKKEYITKQIASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LANDNFIWIGIYSTAFSPARSNWKFNSVEKIAMSMSFLSVQDKEAGYWKKEYITKQIASV
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE3 KAALADILKPVNPYTGLPVKTKEALRIFGLGWAIILKEKGGKEYIMEHVDLSINDTSVTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KAALADILKPVNPYTGLPVKTKEALRIFGLGWAIILKEKGGKEYIMEHVDLSINDTSVTV
170 180 190 200 210 220
160 170 180 190 200 210
pF1KE3 IWYGKKWPCLASLSTLDLCGMTPVFTDWYKTPTKHRLRWHSLIAKYNLSHLTISTMIGCD
:::::::::::::::::::::::::::::::::::: :
XP_011 IWYGKKWPCLASLSTLDLCGMTPVFTDWYKTPTKHR--WLCTESILTMRLAFCLSEQLSR
230 240 250 260 270 280
220 230 240 250 260 270
pF1KE3 RLIRIFCLHPGLLVGVWKKEEELAFVMANLHFHHLVERSTLGSATIPYELPPHSPFLDDS
XP_011 AVFFIIDCFLLKAGLWHA
290 300
>>XP_011524162 (OMIM: 609093) PREDICTED: F-box only prot (264 aa)
initn: 1254 init1: 1254 opt: 1254 Z-score: 1550.6 bits: 295.3 E(85289): 1.3e-79
Smith-Waterman score: 1254; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:77-262)
10 20 30
pF1KE3 MPSEILLKIFSYLDAVSLLCTGCVSRRFYH
::::::::::::::::::::::::::::::
XP_011 SAGSAALRCHAGGGQHWESSFSCCSGFLDGMPSEILLKIFSYLDAVSLLCTGCVSRRFYH
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE3 LANDNFIWIGIYSTAFSPARSNWKFNSVEKIAMSMSFLSVQDKEAGYWKKEYITKQIASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LANDNFIWIGIYSTAFSPARSNWKFNSVEKIAMSMSFLSVQDKEAGYWKKEYITKQIASV
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE3 KAALADILKPVNPYTGLPVKTKEALRIFGLGWAIILKEKGGKEYIMEHVDLSINDTSVTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KAALADILKPVNPYTGLPVKTKEALRIFGLGWAIILKEKGGKEYIMEHVDLSINDTSVTV
170 180 190 200 210 220
160 170 180 190 200 210
pF1KE3 IWYGKKWPCLASLSTLDLCGMTPVFTDWYKTPTKHRLRWHSLIAKYNLSHLTISTMIGCD
::::::::::::::::::::::::::::::::::::
XP_011 IWYGKKWPCLASLSTLDLCGMTPVFTDWYKTPTKHRKY
230 240 250 260
220 230 240 250 260 270
pF1KE3 RLIRIFCLHPGLLVGVWKKEEELAFVMANLHFHHLVERSTLGSATIPYELPPHSPFLDDS
>>XP_016860506 (OMIM: 607871) PREDICTED: F-box only prot (843 aa)
initn: 106 init1: 106 opt: 142 Z-score: 170.3 bits: 41.6 E(85289): 0.0095
Smith-Waterman score: 142; 44.0% identity (72.0% similar) in 50 aa overlap (1-50:75-124)
10 20 30
pF1KE3 MPSEILLKIFSYLDAVSLLCTGCVSRRFYH
.:.:..::::::: .: ..:: .:: .
XP_016 NFGHRAKRARVSGKSQDLSAAPAEQYLQEKLPDEVVLKIFSYLLEQDLCRAACVCKRFSE
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE3 LANDNFIWIGIYSTAFSPARSNWKFNSVEKIAMSMSFLSVQDKEAGYWKKEYITKQIASV
:::: ..: .: .: .:
XP_016 LANDPILWKRLYMEVFEYTRPMMHPEPGKFYQINPEEYEHPNPWKESFQQLYKGAHVKPG
110 120 130 140 150 160
>>NP_079409 (OMIM: 607871) F-box only protein 11 isoform (843 aa)
initn: 106 init1: 106 opt: 142 Z-score: 170.3 bits: 41.6 E(85289): 0.0095
Smith-Waterman score: 142; 44.0% identity (72.0% similar) in 50 aa overlap (1-50:75-124)
10 20 30
pF1KE3 MPSEILLKIFSYLDAVSLLCTGCVSRRFYH
.:.:..::::::: .: ..:: .:: .
NP_079 NFGHRAKRARVSGKSQDLSAAPAEQYLQEKLPDEVVLKIFSYLLEQDLCRAACVCKRFSE
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE3 LANDNFIWIGIYSTAFSPARSNWKFNSVEKIAMSMSFLSVQDKEAGYWKKEYITKQIASV
:::: ..: .: .: .:
NP_079 LANDPILWKRLYMEVFEYTRPMMHPEPGKFYQINPEEYEHPNPWKESFQQLYKGAHVKPG
110 120 130 140 150 160
434 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 19:17:11 2016 done: Mon Nov 7 19:17:12 2016
Total Scan time: 4.770 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]