Result of FASTA (omim) for
pFN21AE3972
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3972, 436 aa
1>>>pF1KE3972 436 - 436 aa - 436 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3714+/-0.000373; mu= 17.2407+/- 0.023
mean_var=84.9878+/-18.019, 0's: 0 Z-trim(114.2): 153 B-trim: 206 in 1/52
Lambda= 0.139122
statistics sampled from 23731 (23907) to 23731 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.28), width: 16
Scan time: 7.490
The best scores are: opt bits E(85289)
NP_116264 (OMIM: 609086) F-box/LRR-repeat protein ( 436) 2974 607.1 2.8e-173
XP_005257803 (OMIM: 609086) PREDICTED: F-box/LRR-r ( 473) 2883 588.9 9.5e-168
NP_036289 (OMIM: 605652) F-box/LRR-repeat protein ( 423) 2372 486.3 6.5e-137
NP_001171835 (OMIM: 609086) F-box/LRR-repeat prote ( 404) 1935 398.5 1.6e-110
XP_005257804 (OMIM: 609086) PREDICTED: F-box/LRR-r ( 441) 1935 398.6 1.7e-110
XP_005265071 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 454) 1846 380.7 4.2e-105
XP_016861583 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 318) 1650 341.2 2.2e-93
XP_005265074 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 318) 1650 341.2 2.2e-93
NP_001165184 (OMIM: 605652) F-box/LRR-repeat prote ( 355) 1215 254.0 4.6e-67
XP_005265072 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349) 1124 235.7 1.4e-61
XP_016861582 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349) 1124 235.7 1.4e-61
XP_016861581 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349) 1124 235.7 1.4e-61
XP_005265073 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349) 1124 235.7 1.4e-61
XP_011531861 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349) 1124 235.7 1.4e-61
XP_011514234 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 639) 576 125.9 2.9e-28
NP_001104508 (OMIM: 609080) F-box/LRR-repeat prote ( 690) 576 126.0 3.1e-28
XP_005250265 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 780) 576 126.0 3.4e-28
XP_011512300 (OMIM: 605656) PREDICTED: F-box/LRR-r ( 444) 520 114.6 5.4e-25
NP_001265246 (OMIM: 605656) F-box/LRR-repeat prote ( 444) 520 114.6 5.4e-25
XP_016864751 (OMIM: 605656) PREDICTED: F-box/LRR-r ( 486) 520 114.6 5.7e-25
NP_036436 (OMIM: 605656) F-box/LRR-repeat protein ( 491) 520 114.6 5.8e-25
XP_006715961 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 584) 454 101.4 6.4e-21
XP_005250266 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 735) 454 101.5 7.6e-21
XP_016867342 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 735) 454 101.5 7.6e-21
XP_011514232 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 735) 454 101.5 7.6e-21
NP_659469 (OMIM: 609080) F-box/LRR-repeat protein ( 735) 454 101.5 7.6e-21
XP_016867341 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 780) 454 101.5 7.9e-21
XP_005250264 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 792) 454 101.5 8e-21
XP_016867339 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 822) 454 101.5 8.3e-21
XP_005250262 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 825) 454 101.5 8.3e-21
XP_011514231 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 783) 452 101.1 1.1e-20
XP_016867340 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 809) 452 101.1 1.1e-20
NP_699181 (OMIM: 609082) F-box/LRR-repeat protein ( 479) 445 99.5 1.9e-20
NP_001274079 (OMIM: 609080) F-box/LRR-repeat prote ( 707) 410 92.7 3.4e-18
XP_011514230 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 797) 410 92.7 3.7e-18
XP_011541876 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 621) 337 78.0 7.9e-14
XP_011541877 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 618) 332 77.0 1.6e-13
XP_011541880 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 582) 331 76.7 1.7e-13
XP_011541879 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 589) 331 76.7 1.7e-13
XP_011541878 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 610) 331 76.7 1.8e-13
NP_001156787 (OMIM: 609083) F-box/LRR-repeat prote ( 701) 331 76.8 2e-13
XP_005272105 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 712) 331 76.8 2e-13
XP_016874365 (OMIM: 609081) PREDICTED: F-box/LRR-r ( 387) 319 74.2 6.8e-13
XP_016874364 (OMIM: 609081) PREDICTED: F-box/LRR-r ( 404) 319 74.2 7e-13
NP_689654 (OMIM: 609081) F-box/LRR-repeat protein ( 418) 319 74.2 7.2e-13
XP_016865218 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 567) 305 71.5 6.3e-12
XP_016866217 (OMIM: 605654,615471) PREDICTED: F-bo ( 379) 273 64.9 4e-10
NP_001265645 (OMIM: 605654,615471) F-box/LRR-repea ( 621) 273 65.1 5.8e-10
NP_036292 (OMIM: 605654,615471) F-box/LRR-repeat p ( 621) 273 65.1 5.8e-10
XP_016866215 (OMIM: 605654,615471) PREDICTED: F-bo ( 621) 273 65.1 5.8e-10
>>NP_116264 (OMIM: 609086) F-box/LRR-repeat protein 20 i (436 aa)
initn: 2974 init1: 2974 opt: 2974 Z-score: 3231.8 bits: 607.1 E(85289): 2.8e-173
Smith-Waterman score: 2974; 100.0% identity (100.0% similar) in 436 aa overlap (1-436:1-436)
10 20 30 40 50 60
pF1KE3 MRRDVNGVTKSRFEMFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 MRRDVNGVTKSRFEMFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLAL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 DGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 DGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 VLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 VLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 QVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 QVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 TICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 TICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 LEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 LEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 LDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 LDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPP
370 380 390 400 410 420
430
pF1KE3 SVGGSRQRFCRCCIIL
::::::::::::::::
NP_116 SVGGSRQRFCRCCIIL
430
>>XP_005257803 (OMIM: 609086) PREDICTED: F-box/LRR-repea (473 aa)
initn: 2883 init1: 2883 opt: 2883 Z-score: 3132.6 bits: 588.9 E(85289): 9.5e-168
Smith-Waterman score: 2883; 100.0% identity (100.0% similar) in 422 aa overlap (15-436:52-473)
10 20 30 40
pF1KE3 MRRDVNGVTKSRFEMFSNSDEAVINKKLPKELLLRIFSFLDVVT
::::::::::::::::::::::::::::::
XP_005 AALPQSRHIQKRRKMAPSRDRLLHFGFKATMFSNSDEAVINKKLPKELLLRIFSFLDVVT
30 40 50 60 70 80
50 60 70 80 90 100
pF1KE3 LCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGV
90 100 110 120 130 140
110 120 130 140 150 160
pF1KE3 GDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKAL
150 160 170 180 190 200
170 180 190 200 210 220
pF1KE3 SEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELV
210 220 230 240 250 260
230 240 250 260 270 280
pF1KE3 TLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCS
270 280 290 300 310 320
290 300 310 320 330 340
pF1KE3 QLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIR
330 340 350 360 370 380
350 360 370 380 390 400
pF1KE3 HLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHL
390 400 410 420 430 440
410 420 430
pF1KE3 PNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL
::::::::::::::::::::::::::::::::
XP_005 PNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL
450 460 470
>>NP_036289 (OMIM: 605652) F-box/LRR-repeat protein 2 is (423 aa)
initn: 2372 init1: 2372 opt: 2372 Z-score: 2579.0 bits: 486.3 E(85289): 6.5e-137
Smith-Waterman score: 2372; 78.2% identity (94.5% similar) in 422 aa overlap (15-436:2-423)
10 20 30 40 50 60
pF1KE3 MRRDVNGVTKSRFEMFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLAL
.:::.::..::::::::::::::::::.::::::::.:.:::.:::
NP_036 MVFSNNDEGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILAL
10 20 30 40
70 80 90 100 110 120
pF1KE3 DGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIE
:::::::::::.:: :.::::::::::::::::::::::::.::::..:.::::::::::
NP_036 DGSNWQRIDLFNFQTDVEGRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE3 VLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCD
:::::::: ::.:: :::.:::::.::::.::.:::: :::..:::: :: ::.::::
NP_036 HLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCD
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE3 QVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLI
:.:::::.:::::: :::::.:.:::::::::::.: .: :::.::::.: .:::::..
NP_036 QITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVV
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE3 TICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHE
::::::.::.:: :::::.::: :.::: :::::.:::.::::.:::.::: :::::::
NP_036 QICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHE
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE3 LEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIE
:::::::::. ::::::::::::::.::.:::::::::::::: ::.:..:.:..:.:.:
NP_036 LEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLE
290 300 310 320 330 340
370 380 390 400 410 420
pF1KE3 LDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPP
:::: ::::..::::..:..:::.:::::::.:::::::.:..::..::::::::::::
NP_036 LDNCLLITDVALEHLENCRGLERLELYDCQQVTRAGIKRMRAQLPHVKVHAYFAPVTPPT
350 360 370 380 390 400
430
pF1KE3 SVGGSRQRFCRCCIIL
.:.:: ::.::::.::
NP_036 AVAGSGQRLCRCCVIL
410 420
>>NP_001171835 (OMIM: 609086) F-box/LRR-repeat protein 2 (404 aa)
initn: 1880 init1: 1880 opt: 1935 Z-score: 2105.2 bits: 398.5 E(85289): 1.6e-110
Smith-Waterman score: 2696; 92.7% identity (92.7% similar) in 436 aa overlap (1-436:1-404)
10 20 30 40 50 60
pF1KE3 MRRDVNGVTKSRFEMFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRRDVNGVTKSRFEMFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLAL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 DGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 VLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCD
::::::::::::: :::::::::::::::
NP_001 VLNLNGCTKTTDA--------------------------------EGCPLLEQLNISWCD
130 140
190 200 210 220 230 240
pF1KE3 QVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLI
150 160 170 180 190 200
250 260 270 280 290 300
pF1KE3 TICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHE
210 220 230 240 250 260
310 320 330 340 350 360
pF1KE3 LEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIE
270 280 290 300 310 320
370 380 390 400 410 420
pF1KE3 LDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPP
330 340 350 360 370 380
430
pF1KE3 SVGGSRQRFCRCCIIL
::::::::::::::::
NP_001 SVGGSRQRFCRCCIIL
390 400
>>XP_005257804 (OMIM: 609086) PREDICTED: F-box/LRR-repea (441 aa)
initn: 1880 init1: 1880 opt: 1935 Z-score: 2104.7 bits: 398.6 E(85289): 1.7e-110
Smith-Waterman score: 2605; 92.4% identity (92.4% similar) in 422 aa overlap (15-436:52-441)
10 20 30 40
pF1KE3 MRRDVNGVTKSRFEMFSNSDEAVINKKLPKELLLRIFSFLDVVT
::::::::::::::::::::::::::::::
XP_005 AALPQSRHIQKRRKMAPSRDRLLHFGFKATMFSNSDEAVINKKLPKELLLRIFSFLDVVT
30 40 50 60 70 80
50 60 70 80 90 100
pF1KE3 LCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGV
90 100 110 120 130 140
110 120 130 140 150 160
pF1KE3 GDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKAL
:::::::::::::::::::::::::::::
XP_005 GDNALRTFAQNCRNIEVLNLNGCTKTTDA-------------------------------
150 160 170
170 180 190 200 210 220
pF1KE3 SEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 -EGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELV
180 190 200 210 220
230 240 250 260 270 280
pF1KE3 TLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCS
230 240 250 260 270 280
290 300 310 320 330 340
pF1KE3 QLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIR
290 300 310 320 330 340
350 360 370 380 390 400
pF1KE3 HLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHL
350 360 370 380 390 400
410 420 430
pF1KE3 PNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL
::::::::::::::::::::::::::::::::
XP_005 PNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL
410 420 430 440
>>XP_005265071 (OMIM: 605652) PREDICTED: F-box/LRR-repea (454 aa)
initn: 2724 init1: 1797 opt: 1846 Z-score: 2008.0 bits: 380.7 E(85289): 4.2e-105
Smith-Waterman score: 2300; 72.8% identity (88.1% similar) in 453 aa overlap (15-436:2-454)
10 20 30 40 50 60
pF1KE3 MRRDVNGVTKSRFEMFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLAL
.:::.::..::::::::::::::::::.::::::::.:.:::.:::
XP_005 MVFSNNDEGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILAL
10 20 30 40
70 80 90 100 110 120
pF1KE3 DGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIE
:::::::::::.:: :.::::::::::::::::::::::::.::::..:.::::::::::
XP_005 DGSNWQRIDLFNFQTDVEGRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE3 VLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCD
:::::::: ::.:: :::.:::::.::::.::.:::: :::..:::: :: ::.::::
XP_005 HLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCD
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE3 QVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLI
:.:::::.:::::: :::::.:.:::::::::::.: .: :::.::::.: .:::::..
XP_005 QITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVV
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE3 TICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHE
::::::.::.:: :::::.::: :.::: :::::.:::.::::.:::.::: :::::::
XP_005 QICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHE
230 240 250 260 270 280
310 320 330
pF1KE3 LEKMDLEECVQITDSTLIQLSIHCPRLQVL------------------------------
:::::::::. ::::::::::::::.::.:
XP_005 LEKMDLEECILITDSTLIQLSIHCPKLQALVSLSFSDIIHLLKMKEPSHHNKKLFGFSFC
290 300 310 320 330 340
340 350 360 370 380
pF1KE3 -SLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHSLERIELYDC
::::::::::::: ::.:..:.:..:.:.::::: ::::..::::..:..:::.:::::
XP_005 KSLSHCELITDDGILHLSNSTCGHERLRVLELDNCLLITDVALEHLENCRGLERLELYDC
350 360 370 380 390 400
390 400 410 420 430
pF1KE3 QQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL
::.:::::::.:..::..:::::::::::: .:.:: ::.::::.::
XP_005 QQVTRAGIKRMRAQLPHVKVHAYFAPVTPPTAVAGSGQRLCRCCVIL
410 420 430 440 450
>>XP_016861583 (OMIM: 605652) PREDICTED: F-box/LRR-repea (318 aa)
initn: 1650 init1: 1650 opt: 1650 Z-score: 1797.4 bits: 341.2 E(85289): 2.2e-93
Smith-Waterman score: 1650; 75.3% identity (93.4% similar) in 304 aa overlap (133-436:15-318)
110 120 130 140 150 160
pF1KE3 GVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLK
.:: :::.:::::.::::.::.:::: :::
XP_016 MDAQKSLTVRLLFFSTCYSLSRFCSKLKHLDLTSCVSITNSSLK
10 20 30 40
170 180 190 200 210 220
pF1KE3 ALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPE
..:::: :: ::.:::::.:::::.:::::: :::::.:.:::::::::::.: .: :
XP_016 GISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHE
50 60 70 80 90 100
230 240 250 260 270 280
pF1KE3 LVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVAR
::.::::.: .:::::.. ::::::.::.:: :::::.::: :.::: :::::.:::.::
XP_016 LVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAAR
110 120 130 140 150 160
290 300 310 320 330 340
pF1KE3 CSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDG
::.:::.::: ::::::::::::::::. ::::::::::::::.::.:::::::::::::
XP_016 CSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCELITDDG
170 180 190 200 210 220
350 360 370 380 390 400
pF1KE3 IRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRT
: ::.:..:.:..:.:.::::: ::::..::::..:..:::.:::::::.:::::::.:.
XP_016 ILHLSNSTCGHERLRVLELDNCLLITDVALEHLENCRGLERLELYDCQQVTRAGIKRMRA
230 240 250 260 270 280
410 420 430
pF1KE3 HLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL
.::..:::::::::::: .:.:: ::.::::.::
XP_016 QLPHVKVHAYFAPVTPPTAVAGSGQRLCRCCVIL
290 300 310
>>XP_005265074 (OMIM: 605652) PREDICTED: F-box/LRR-repea (318 aa)
initn: 1650 init1: 1650 opt: 1650 Z-score: 1797.4 bits: 341.2 E(85289): 2.2e-93
Smith-Waterman score: 1650; 75.3% identity (93.4% similar) in 304 aa overlap (133-436:15-318)
110 120 130 140 150 160
pF1KE3 GVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLK
.:: :::.:::::.::::.::.:::: :::
XP_005 MDAQKSLTVRLLFFSTCYSLSRFCSKLKHLDLTSCVSITNSSLK
10 20 30 40
170 180 190 200 210 220
pF1KE3 ALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPE
..:::: :: ::.:::::.:::::.:::::: :::::.:.:::::::::::.: .: :
XP_005 GISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHE
50 60 70 80 90 100
230 240 250 260 270 280
pF1KE3 LVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVAR
::.::::.: .:::::.. ::::::.::.:: :::::.::: :.::: :::::.:::.::
XP_005 LVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAAR
110 120 130 140 150 160
290 300 310 320 330 340
pF1KE3 CSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDG
::.:::.::: ::::::::::::::::. ::::::::::::::.::.:::::::::::::
XP_005 CSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCELITDDG
170 180 190 200 210 220
350 360 370 380 390 400
pF1KE3 IRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRT
: ::.:..:.:..:.:.::::: ::::..::::..:..:::.:::::::.:::::::.:.
XP_005 ILHLSNSTCGHERLRVLELDNCLLITDVALEHLENCRGLERLELYDCQQVTRAGIKRMRA
230 240 250 260 270 280
410 420 430
pF1KE3 HLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL
.::..:::::::::::: .:.:: ::.::::.::
XP_005 QLPHVKVHAYFAPVTPPTAVAGSGQRLCRCCVIL
290 300 310
>>NP_001165184 (OMIM: 605652) F-box/LRR-repeat protein 2 (355 aa)
initn: 1340 init1: 1215 opt: 1215 Z-score: 1324.9 bits: 254.0 E(85289): 4.6e-67
Smith-Waterman score: 1863; 65.6% identity (79.6% similar) in 422 aa overlap (15-436:2-355)
10 20 30 40 50 60
pF1KE3 MRRDVNGVTKSRFEMFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLAL
.:::.::..::::::::::::::::::.::::::::.:.:::.:::
NP_001 MVFSNNDEGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILAL
10 20 30 40
70 80 90 100 110 120
pF1KE3 DGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIE
:::::::::::.:: :.::::::::::::::::::::::::.::::..:.::::::::::
NP_001 DGSNWQRIDLFNFQTDVEGRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE3 VLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCD
:::::::: ::.:: :::.:::::.:
NP_001 HLNLNGCTKITDSTCYSLSRFCSKLKH---------------------------------
110 120 130
190 200 210 220 230 240
pF1KE3 QVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLI
: .: :::.::::.: .:::::..
NP_001 -----------------------------------IQNYCHELVSLNLQSCSRITDEGVV
140 150
250 260 270 280 290 300
pF1KE3 TICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHE
::::::.::.:: :::::.::: :.::: :::::.:::.::::.:::.::: :::::::
NP_001 QICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHE
160 170 180 190 200 210
310 320 330 340 350 360
pF1KE3 LEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIE
:::::::::. ::::::::::::::.::.:::::::::::::: ::.:..:.:..:.:.:
NP_001 LEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLE
220 230 240 250 260 270
370 380 390 400 410 420
pF1KE3 LDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPP
:::: ::::..::::..:..:::.:::::::.:::::::.:..::..::::::::::::
NP_001 LDNCLLITDVALEHLENCRGLERLELYDCQQVTRAGIKRMRAQLPHVKVHAYFAPVTPPT
280 290 300 310 320 330
430
pF1KE3 SVGGSRQRFCRCCIIL
.:.:: ::.::::.::
NP_001 AVAGSGQRLCRCCVIL
340 350
>>XP_005265072 (OMIM: 605652) PREDICTED: F-box/LRR-repea (349 aa)
initn: 1964 init1: 1075 opt: 1124 Z-score: 1226.3 bits: 235.7 E(85289): 1.4e-61
Smith-Waterman score: 1578; 68.4% identity (84.8% similar) in 335 aa overlap (133-436:15-349)
110 120 130 140 150 160
pF1KE3 GVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLK
.:: :::.:::::.::::.::.:::: :::
XP_005 MDAQKSLTVRLLFFSTCYSLSRFCSKLKHLDLTSCVSITNSSLK
10 20 30 40
170 180 190 200 210 220
pF1KE3 ALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPE
..:::: :: ::.:::::.:::::.:::::: :::::.:.:::::::::::.: .: :
XP_005 GISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHE
50 60 70 80 90 100
230 240 250 260 270 280
pF1KE3 LVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVAR
::.::::.: .:::::.. ::::::.::.:: :::::.::: :.::: :::::.:::.::
XP_005 LVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAAR
110 120 130 140 150 160
290 300 310 320 330
pF1KE3 CSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVL------------
::.:::.::: ::::::::::::::::. ::::::::::::::.::.:
XP_005 CSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALVSLSFSDIIHLL
170 180 190 200 210 220
340 350 360 370
pF1KE3 -------------------SLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDAS
::::::::::::: ::.:..:.:..:.:.::::: ::::..
XP_005 KMKEPSHHNKKLFGFSFCKSLSHCELITDDGILHLSNSTCGHERLRVLELDNCLLITDVA
230 240 250 260 270 280
380 390 400 410 420 430
pF1KE3 LEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCR
::::..:..:::.:::::::.:::::::.:..::..:::::::::::: .:.:: ::.::
XP_005 LEHLENCRGLERLELYDCQQVTRAGIKRMRAQLPHVKVHAYFAPVTPPTAVAGSGQRLCR
290 300 310 320 330 340
pF1KE3 CCIIL
::.::
XP_005 CCVIL
436 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 08:27:09 2016 done: Sun Nov 6 08:27:10 2016
Total Scan time: 7.490 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]