Result of FASTA (ccds) for
pFN21AE3966
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3966, 347 aa
1>>>pF1KE3966 347 - 347 aa - 347 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.6498+/-0.00105; mu= -3.3152+/- 0.062
mean_var=242.1339+/-53.701, 0's: 0 Z-trim(111.6): 112 B-trim: 522 in 1/53
Lambda= 0.082423
statistics sampled from 12383 (12497) to 12383 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.384), width: 16
Scan time: 2.670
The best scores are: opt bits E(32554)
CCDS31394.1 TRIM5 gene_id:85363|Hs108|chr11 ( 347) 2331 290.0 2e-78
CCDS31392.1 TRIM5 gene_id:85363|Hs108|chr11 ( 326) 2000 250.6 1.4e-66
CCDS31393.1 TRIM5 gene_id:85363|Hs108|chr11 ( 493) 1992 249.7 3.7e-66
CCDS31390.1 TRIM6 gene_id:117854|Hs108|chr11 ( 488) 1280 165.1 1.1e-40
CCDS31389.1 TRIM6 gene_id:117854|Hs108|chr11 ( 516) 1280 165.1 1.2e-40
CCDS31388.1 TRIM34 gene_id:445372|Hs108|chr11 ( 842) 1282 165.5 1.5e-40
CCDS31391.1 TRIM34 gene_id:53840|Hs108|chr11 ( 488) 1222 158.2 1.3e-38
CCDS41612.1 TRIM22 gene_id:10346|Hs108|chr11 ( 498) 1193 154.7 1.5e-37
CCDS44525.1 TRIM21 gene_id:6737|Hs108|chr11 ( 475) 830 111.6 1.4e-24
CCDS1636.1 TRIM58 gene_id:25893|Hs108|chr1 ( 486) 736 100.4 3.3e-21
CCDS31048.1 TRIM11 gene_id:81559|Hs108|chr1 ( 468) 652 90.4 3.3e-18
CCDS4568.1 TRIM38 gene_id:10475|Hs108|chr6 ( 465) 632 88.0 1.7e-17
CCDS31356.1 TRIM68 gene_id:55128|Hs108|chr11 ( 485) 604 84.7 1.7e-16
CCDS44327.1 TRIM17 gene_id:51127|Hs108|chr1 ( 343) 576 81.3 1.3e-15
CCDS1571.1 TRIM17 gene_id:51127|Hs108|chr1 ( 477) 578 81.6 1.5e-15
CCDS4654.1 TRIM27 gene_id:5987|Hs108|chr6 ( 513) 561 79.6 6.3e-15
CCDS34374.1 TRIM31 gene_id:11074|Hs108|chr6 ( 425) 558 79.2 7e-15
CCDS5678.1 TRIM4 gene_id:89122|Hs108|chr7 ( 474) 554 78.7 1.1e-14
CCDS4676.1 TRIM10 gene_id:10107|Hs108|chr6 ( 395) 534 76.3 4.8e-14
CCDS34375.1 TRIM10 gene_id:10107|Hs108|chr6 ( 481) 534 76.4 5.6e-14
CCDS34378.1 TRIM39 gene_id:56658|Hs108|chr6 ( 488) 527 75.5 1e-13
CCDS78121.1 RPP21 gene_id:202658|Hs108|chr6 ( 503) 527 75.5 1e-13
CCDS34377.1 TRIM39 gene_id:56658|Hs108|chr6 ( 518) 520 74.7 1.9e-13
CCDS3808.1 TRIM60 gene_id:166655|Hs108|chr4 ( 471) 486 70.7 2.9e-12
CCDS55762.1 TRIM49B gene_id:283116|Hs108|chr11 ( 452) 465 68.1 1.6e-11
CCDS2015.1 TRIM43 gene_id:129868|Hs108|chr2 ( 446) 463 67.9 1.8e-11
CCDS60930.1 TRIM49D1 gene_id:399939|Hs108|chr11 ( 452) 447 66.0 6.9e-11
>>CCDS31394.1 TRIM5 gene_id:85363|Hs108|chr11 (347 aa)
initn: 2331 init1: 2331 opt: 2331 Z-score: 1521.3 bits: 290.0 E(32554): 2e-78
Smith-Waterman score: 2331; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347)
10 20 30 40 50 60
pF1KE3 MASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SYQPENIRPNRHVANIVEKLREVKLSPEGQKVDHCARHGEKLLLFCQEDGKVICWLCERS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SYQPENIRPNRHVANIVEKLREVKLSPEGQKVDHCARHGEKLLLFCQEDGKVICWLCERS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 QEHRGHHTFLTEEVAREYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQIQYDKTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QEHRGHHTFLTEEVAREYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQIQYDKTN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSLRELISDLEHRLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSLRELISDLEHRLQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 GSVMELLQGVDGVIKRTENVTLKKPETFPKNQRRVFRAPDLKGMLEVFRELTDVRRYWGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GSVMELLQGVDGVIKRTENVTLKKPETFPKNQRRVFRAPDLKGMLEVFRELTDVRRYWGK
250 260 270 280 290 300
310 320 330 340
pF1KE3 EKSHYHKPPCGLSLLLSLSFRILCSLLGSCFKIYDSPSKTHITYPSL
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EKSHYHKPPCGLSLLLSLSFRILCSLLGSCFKIYDSPSKTHITYPSL
310 320 330 340
>>CCDS31392.1 TRIM5 gene_id:85363|Hs108|chr11 (326 aa)
initn: 2000 init1: 2000 opt: 2000 Z-score: 1309.0 bits: 250.6 E(32554): 1.4e-66
Smith-Waterman score: 2000; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)
10 20 30 40 50 60
pF1KE3 MASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SYQPENIRPNRHVANIVEKLREVKLSPEGQKVDHCARHGEKLLLFCQEDGKVICWLCERS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SYQPENIRPNRHVANIVEKLREVKLSPEGQKVDHCARHGEKLLLFCQEDGKVICWLCERS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 QEHRGHHTFLTEEVAREYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQIQYDKTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QEHRGHHTFLTEEVAREYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQIQYDKTN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSLRELISDLEHRLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSLRELISDLEHRLQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 GSVMELLQGVDGVIKRTENVTLKKPETFPKNQRRVFRAPDLKGMLEVFRELTDVRRYWGK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GSVMELLQGVDGVIKRTENVTLKKPETFPKNQRRVFRAPDLKGMLEVFRELTDVRRYWGW
250 260 270 280 290 300
310 320 330 340
pF1KE3 EKSHYHKPPCGLSLLLSLSFRILCSLLGSCFKIYDSPSKTHITYPSL
CCDS31 SAMARSRFTATSTSQIQAILLPQPPK
310 320
>>CCDS31393.1 TRIM5 gene_id:85363|Hs108|chr11 (493 aa)
initn: 1992 init1: 1992 opt: 1992 Z-score: 1301.3 bits: 249.7 E(32554): 3.7e-66
Smith-Waterman score: 1992; 100.0% identity (100.0% similar) in 298 aa overlap (1-298:1-298)
10 20 30 40 50 60
pF1KE3 MASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SYQPENIRPNRHVANIVEKLREVKLSPEGQKVDHCARHGEKLLLFCQEDGKVICWLCERS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SYQPENIRPNRHVANIVEKLREVKLSPEGQKVDHCARHGEKLLLFCQEDGKVICWLCERS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 QEHRGHHTFLTEEVAREYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQIQYDKTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QEHRGHHTFLTEEVAREYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQIQYDKTN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSLRELISDLEHRLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSLRELISDLEHRLQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 GSVMELLQGVDGVIKRTENVTLKKPETFPKNQRRVFRAPDLKGMLEVFRELTDVRRYWGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GSVMELLQGVDGVIKRTENVTLKKPETFPKNQRRVFRAPDLKGMLEVFRELTDVRRYWVD
250 260 270 280 290 300
310 320 330 340
pF1KE3 EKSHYHKPPCGLSLLLSLSFRILCSLLGSCFKIYDSPSKTHITYPSL
CCDS31 VTVAPNNISCAVISEDKRQVSSPKPQIIYGARGTRYQTFVNFNYCTGILGSQSITSGKHY
310 320 330 340 350 360
>>CCDS31390.1 TRIM6 gene_id:117854|Hs108|chr11 (488 aa)
initn: 1287 init1: 846 opt: 1280 Z-score: 843.8 bits: 165.1 E(32554): 1.1e-40
Smith-Waterman score: 1280; 63.0% identity (85.3% similar) in 300 aa overlap (1-298:1-300)
10 20 30 40 50
pF1KE3 MASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDK-GESSCPVCR
:.: .::...:::::::::::::.:::.::::::::::.: : ..:.. . :: :::::.
CCDS31 MTSPVLVDIREEVTCPICLELLTEPLSIDCGHSFCQACITPNGRESVIGQEGERSCPVCQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 ISYQPENIRPNRHVANIVEKLREVKLSPEGQ-KVDHCARHGEKLLLFCQEDGKVICWLCE
:::: :.:::::.::::..:::: :.: : :. :: ::::: :::::::::::::::
CCDS31 TSYQPGNLRPNRHLANIVRRLREVVLGPGKQLKAVLCADHGEKLQLFCQEDGKVICWLCE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 RSQEHRGHHTFLTEEVAREYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQIQYDK
::::::::::::.::::.::: :.: .:. :....::::.: : :::.:.:::.:.. ..
CCDS31 RSQEHRGHHTFLVEEVAQEYQEKFQESLKKLKNEEQEAEKLTAFIREKKTSWKNQMEPER
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE3 TNVLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSLRELISDLEHR
. ..:.:::.::: :. ::..::.::. :. . ..:...:.:::::::::::::.:
CCDS31 CRIQTEFNQLRNILDRVEQRELKKLEQEEKKGLRIIEEAENDLVHQTQSLRELISDLERR
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE3 LQGSVMELLQGVDGVIKRTENVTLKKPETFPKNQRRVFRAPDLKGMLEVFRELTDVRRYW
:::.::::: :. : .:.: ::.:::..: . : .::::::: ::.: ::::::. ::
CCDS31 CQGSTMELLQDVSDVTERSEFWTLRKPEALPTKLRSMFRAPDLKRMLRVCRELTDVQSYW
250 260 270 280 290 300
300 310 320 330 340
pF1KE3 GKEKSHYHKPPCGLSLLLSLSFRILCSLLGSCFKIYDSPSKTHITYPSL
CCDS31 VDVTLNPHTANLNLVLAKNRRQVRFVGAKVSGPSCLEKHYDCSVLGSQHFSSGKHYWEVD
310 320 330 340 350 360
>>CCDS31389.1 TRIM6 gene_id:117854|Hs108|chr11 (516 aa)
initn: 1287 init1: 846 opt: 1280 Z-score: 843.4 bits: 165.1 E(32554): 1.2e-40
Smith-Waterman score: 1280; 63.0% identity (85.3% similar) in 300 aa overlap (1-298:29-328)
10 20 30
pF1KE3 MASGILVNVKEEVTCPICLELLTQPLSLDCGH
:.: .::...:::::::::::::.:::.::::
CCDS31 MCGSERILQAGNILEIRVGQAGARRVATMTSPVLVDIREEVTCPICLELLTEPLSIDCGH
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE3 SFCQACLTANHKKSMLDK-GESSCPVCRISYQPENIRPNRHVANIVEKLREVKLSPEGQ-
::::::.: : ..:.. . :: :::::. :::: :.:::::.::::..:::: :.: :
CCDS31 SFCQACITPNGRESVIGQEGERSCPVCQTSYQPGNLRPNRHLANIVRRLREVVLGPGKQL
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE3 KVDHCARHGEKLLLFCQEDGKVICWLCERSQEHRGHHTFLTEEVAREYQVKLQAALEMLR
:. :: ::::: :::::::::::::::::::::::::::.::::.::: :.: .:. :.
CCDS31 KAVLCADHGEKLQLFCQEDGKVICWLCERSQEHRGHHTFLVEEVAQEYQEKFQESLKKLK
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE3 QKQQEAEELEADIREEKASWKTQIQYDKTNVLADFEQLRDILDWEESNELQNLEKEEEDI
...::::.: : :::.:.:::.:.. .. . ..:.:::.::: :. ::..::.::.
CCDS31 NEEQEAEKLTAFIREKKTSWKNQMEPERCRIQTEFNQLRNILDRVEQRELKKLEQEEKKG
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE3 LKSLTNSETEMVQQTQSLRELISDLEHRLQGSVMELLQGVDGVIKRTENVTLKKPETFPK
:. . ..:...:.:::::::::::::.: :::.::::: :. : .:.: ::.:::..:
CCDS31 LRIIEEAENDLVHQTQSLRELISDLERRCQGSTMELLQDVSDVTERSEFWTLRKPEALPT
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE3 NQRRVFRAPDLKGMLEVFRELTDVRRYWGKEKSHYHKPPCGLSLLLSLSFRILCSLLGSC
. : .::::::: ::.: ::::::. ::
CCDS31 KLRSMFRAPDLKRMLRVCRELTDVQSYWVDVTLNPHTANLNLVLAKNRRQVRFVGAKVSG
310 320 330 340 350 360
>>CCDS31388.1 TRIM34 gene_id:445372|Hs108|chr11 (842 aa)
initn: 1290 init1: 848 opt: 1282 Z-score: 841.7 bits: 165.5 E(32554): 1.5e-40
Smith-Waterman score: 1282; 62.3% identity (84.9% similar) in 305 aa overlap (1-303:29-333)
10 20 30
pF1KE3 MASGILVNVKEEVTCPICLELLTQPLSLDCGH
:.: .::...:::::::::::::.:::.::::
CCDS31 MCGSERILQAGNILEIRVGQAGARRVATMTSPVLVDIREEVTCPICLELLTEPLSIDCGH
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE3 SFCQACLTANHKKSMLDK-GESSCPVCRISYQPENIRPNRHVANIVEKLREVKLSPEGQ-
::::::.: : ..:.. . :: :::::. :::: :.:::::.::::..:::: :.: :
CCDS31 SFCQACITPNGRESVIGQEGERSCPVCQTSYQPGNLRPNRHLANIVRRLREVVLGPGKQL
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE3 KVDHCARHGEKLLLFCQEDGKVICWLCERSQEHRGHHTFLTEEVAREYQVKLQAALEMLR
:. :: ::::: :::::::::::::::::::::::::::.::::.::: :.: .:. :.
CCDS31 KAVLCADHGEKLQLFCQEDGKVICWLCERSQEHRGHHTFLVEEVAQEYQEKFQESLKKLK
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE3 QKQQEAEELEADIREEKASWKTQIQYDKTNVLADFEQLRDILDWEESNELQNLEKEEEDI
...::::.: : :::.:.:::.:.. .. . ..:.:::.::: :. ::..::.::.
CCDS31 NEEQEAEKLTAFIREKKTSWKNQMEPERCRIQTEFNQLRNILDRVEQRELKKLEQEEKKG
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE3 LKSLTNSETEMVQQTQSLRELISDLEHRLQGSVMELLQGVDGVIKRTENVTLKKPETFPK
:. . ..:...:.:::::::::::::.: :::.::::: :. : .:.: ::.:::..:
CCDS31 LRIIEEAENDLVHQTQSLRELISDLERRCQGSTMELLQDVSDVTERSEFWTLRKPEALPT
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE3 NQRRVFRAPDLKGMLEVFRELTDVRRYWGKEKSHYHKPPCGLSLLLSLSFRILCSLLGSC
. : .::::::: ::.: ::::::. ::. . :
CCDS31 KLRSMFRAPDLKRMLRVCRELTDVQSYWAIQGSLTRRERRASGVRTRRSQGSSAMASKIL
310 320 330 340 350 360
340
pF1KE3 FKIYDSPSKTHITYPSL
CCDS31 LNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE
370 380 390 400 410 420
>--
initn: 1089 init1: 821 opt: 1222 Z-score: 803.1 bits: 158.3 E(32554): 2.1e-38
Smith-Waterman score: 1222; 61.3% identity (84.3% similar) in 300 aa overlap (1-298:355-654)
10 20 30
pF1KE3 MASGILVNVKEEVTCPICLELLTQPLSLDC
::: ::.::.:::::::::::::.::::::
CCDS31 QSYWAIQGSLTRRERRASGVRTRRSQGSSAMASKILLNVQEEVTCPICLELLTEPLSLDC
330 340 350 360 370 380
40 50 60 70 80
pF1KE3 GHSFCQACLTANHKKSMLDKG-ESSCPVCRISYQPENIRPNRHVANIVEKLREVKLSPE-
:::.:.::.:...:... . : .:::::: :::. :... :.:.:::::.:.::::::.
CCDS31 GHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIVERLKEVKLSPDN
390 400 410 420 430 440
90 100 110 120 130 140
pF1KE3 GQKVDHCARHGEKLLLFCQEDGKVICWLCERSQEHRGHHTFLTEEVAREYQVKLQAALEM
:.: : : .:::::::::.:: :::::::::::::::::: ::::: .: : ::::.:.
CCDS31 GKKRDLCDHHGEKLLLFCKEDRKVICWLCERSQEHRGHHTVLTEEVFKECQEKLQAVLKR
450 460 470 480 490 500
150 160 170 180 190 200
pF1KE3 LRQKQQEAEELEADIREEKASWKTQIQYDKTNVLADFEQLRDILDWEESNELQNLEKEEE
:.....:::.:::::::::.::: :.: .. . ..:.:::.::. ::. ::: ::.::.
CCDS31 LKKEEEEAEKLEADIREEKTSWKYQVQTERQRIQTEFDQLRSILNNEEQRELQRLEEEEK
510 520 530 540 550 560
210 220 230 240 250 260
pF1KE3 DILKSLTNSETEMVQQTQSLRELISDLEHRLQGSVMELLQGVDGVIKRTENVTLKKPETF
: .....: :.::: : .::::::.: : : :.::::: ..:..: .: ::::.
CCDS31 KTLDKFAEAEDELVQQKQLVRELISDVECRSQWSTMELLQDMSGIMKWSEIWRLKKPKMV
570 580 590 600 610 620
270 280 290 300 310 320
pF1KE3 PKNQRRVFRAPDLKGMLEVFRELTDVRRYWGKEKSHYHKPPCGLSLLLSLSFRILCSLLG
:. . ::.::::. ::..::::: :: ::
CCDS31 SKKLKTVFHAPDLSRMLQMFRELTAVRCYWVDVTLNSVNLNLNLVLSEDQRQVISVPIWP
630 640 650 660 670 680
>>CCDS31391.1 TRIM34 gene_id:53840|Hs108|chr11 (488 aa)
initn: 1089 init1: 821 opt: 1222 Z-score: 806.5 bits: 158.2 E(32554): 1.3e-38
Smith-Waterman score: 1222; 61.3% identity (84.3% similar) in 300 aa overlap (1-298:1-300)
10 20 30 40 50
pF1KE3 MASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKG-ESSCPVCR
::: ::.::.:::::::::::::.:::::::::.:.::.:...:... . : .::::::
CCDS31 MASKILLNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 ISYQPENIRPNRHVANIVEKLREVKLSPE-GQKVDHCARHGEKLLLFCQEDGKVICWLCE
:::. :... :.:.:::::.:.::::::. :.: : : .:::::::::.:: ::::::::
CCDS31 ISYSFEHLQANQHLANIVERLKEVKLSPDNGKKRDLCDHHGEKLLLFCKEDRKVICWLCE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 RSQEHRGHHTFLTEEVAREYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQIQYDK
:::::::::: ::::: .: : ::::.:. :.....:::.:::::::::.::: :.: ..
CCDS31 RSQEHRGHHTVLTEEVFKECQEKLQAVLKRLKKEEEEAEKLEADIREEKTSWKYQVQTER
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE3 TNVLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSLRELISDLEHR
. ..:.:::.::. ::. ::: ::.::. : .....: :.::: : .::::::.: :
CCDS31 QRIQTEFDQLRSILNNEEQRELQRLEEEEKKTLDKFAEAEDELVQQKQLVRELISDVECR
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE3 LQGSVMELLQGVDGVIKRTENVTLKKPETFPKNQRRVFRAPDLKGMLEVFRELTDVRRYW
: :.::::: ..:..: .: ::::. :. . ::.::::. ::..::::: :: ::
CCDS31 SQWSTMELLQDMSGIMKWSEIWRLKKPKMVSKKLKTVFHAPDLSRMLQMFRELTAVRCYW
250 260 270 280 290 300
300 310 320 330 340
pF1KE3 GKEKSHYHKPPCGLSLLLSLSFRILCSLLGSCFKIYDSPSKTHITYPSL
CCDS31 VDVTLNSVNLNLNLVLSEDQRQVISVPIWPFQCYNYGVLGSQYFSSGKHYWEVDVSKKTA
310 320 330 340 350 360
>>CCDS41612.1 TRIM22 gene_id:10346|Hs108|chr11 (498 aa)
initn: 1210 init1: 771 opt: 1193 Z-score: 787.8 bits: 154.7 E(32554): 1.5e-37
Smith-Waterman score: 1193; 57.3% identity (83.7% similar) in 300 aa overlap (1-298:1-300)
10 20 30 40 50
pF1KE3 MASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKS-MLDKGESSCPVCR
: .. :....::::::::::::.::::::::::::::.::. :.: ....::::::::.
CCDS41 MDFSVKVDIEKEVTCPICLELLTEPLSLDCGHSFCQACITAKIKESVIISRGESSCPVCQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 ISYQPENIRPNRHVANIVEKLREVKLSP-EGQKVDHCARHGEKLLLFCQEDGKVICWLCE
.:: :.:::::.:::::...:::.:: :::: : : .::.:: .::.::::::::.::
CCDS41 TRFQPGNLRPNRHLANIVERVKEVKMSPQEGQKRDVCEHHGKKLQIFCKEDGKVICWVCE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 RSQEHRGHHTFLTEEVAREYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQIQYDK
::::.::.:: .::..: : :::.::. : ...::::.:: :::.:...::. :: ..
CCDS41 LSQEHQGHQTFRINEVVKECQEKLQVALQRLIKEDQEAEKLEDDIRQERTAWKNYIQIER
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE3 TNVLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSLRELISDLEHR
..: :...: ::: ::. :::.::. : ..: .:. . ..::: :. :::::..:
CCDS41 QKILKGFNEMRVILDNEEQRELQKLEEGEVNVLDNLAAATDQLVQQRQDASTLISDLQRR
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE3 LQGSVMELLQGVDGVIKRTENVTLKKPETFPKNQRRVFRAPDLKGMLEVFRELTDVRRYW
:.:: .:.:: : :.::.:. :::::.. :. . :::.:::.:::.:..:::::. ::
CCDS41 LRGSSVEMLQDVIDVMKRSESWTLKKPKSVSKKLKSVFRVPDLSGMLQVLKELTDVQYYW
250 260 270 280 290 300
300 310 320 330 340
pF1KE3 GKEKSHYHKPPCGLSLLLSLSFRILCSLLGSCFKIYDSPSKTHITYPSL
CCDS41 VDVMLNPGSATSNVAISVDQRQVKTVRTCTFKNSNPCDFSAFGVFGCQYFSSGKYYWEVD
310 320 330 340 350 360
>>CCDS44525.1 TRIM21 gene_id:6737|Hs108|chr11 (475 aa)
initn: 861 init1: 563 opt: 830 Z-score: 554.8 bits: 111.6 E(32554): 1.4e-24
Smith-Waterman score: 830; 44.9% identity (75.6% similar) in 287 aa overlap (1-285:1-282)
10 20 30 40 50
pF1KE3 MASGI-LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR
:::. :. . :::::::::. ...:.:..::::::: :.. : : : :::::
CCDS44 MASAARLTMMWEEVTCPICLDPFVEPVSIECGHSFCQECISQVGKG-----GGSVCPVCR
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 ISYQPENIRPNRHVANIVEKLREV-KLSPEGQKVDHCARHGEKLLLFCQEDGKVICWLCE
. .:.::::..::.:..:.:. . . :: . ..:: :::.: :::..:::..::.:
CCDS44 QRFLLKNLRPNRQLANMVNNLKEISQEAREGTQGERCAVHGERLHLFCEKDGKALCWVCA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 RSQEHRGHHTFLTEEVAREYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQIQYDK
.:..:: : ::.:.::: :::.:: ::.::. ::.::..: ..:.:: .. .:
CCDS44 QSRKHRDHAMVPLEEAAQEYQEKLQVALGELRRKQELAEKLEVEIAIKRADWKKTVETQK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 TNVLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSLRELISDLEHR
. . :.: : ...: ::. .::.:::.:.. :. : ..:....::.:.:.::::.:..:
CCDS44 SRIHAEFVQQKNFLVEEEQRQLQELEKDEREQLRILGEKEAKLAQQSQALQELISELDRR
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE3 LQGSVMELLQGVDGVIKRTENVTLKKPETFPKNQRRVFRAPDLKGMLEVFRELTDVRRYW
..:..:::: : :..:.:. .:: . . : : ..: :: ::
CCDS44 CHSSALELLQEVIIVLERSESWNLKDLDITSPELRSVCHVPGLKKMLRTCAVHITLDPDT
240 250 260 270 280 290
300 310 320 330 340
pF1KE3 GKEKSHYHKPPCGLSLLLSLSFRILCSLLGSCFKIYDSPSKTHITYPSL
CCDS44 ANPWLILSEDRRQVRLGDTQQSIPGNEERFDSYPMVLGAQHFHSGKHYWEVDVTGKEAWD
300 310 320 330 340 350
>>CCDS1636.1 TRIM58 gene_id:25893|Hs108|chr1 (486 aa)
initn: 547 init1: 547 opt: 736 Z-score: 494.2 bits: 100.4 E(32554): 3.3e-21
Smith-Waterman score: 736; 37.8% identity (71.2% similar) in 288 aa overlap (9-295:10-294)
10 20 30 40 50
pF1KE3 MASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKS-MLDKGESSCPVC
..:.. ::.::..: .:.:.::::::: :.. .:: . : .:: :
CCDS16 MAWAPPGERLREDARCPVCLDFLQEPVSVDCGHSFCLRCISEFCEKSDGAQGGVYACPQC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 RISYQPENIRPNRHVANIVEKLREVKLSPEGQKVDHCARHGEKLLLFCQEDGKVICWLCE
: ..: ..::::..:..::..:.. :. : . .:::::: : ::.:: ..::.:.
CCDS16 RGPFRPSGFRPNRQLAGLVESVRRLGLGA-GPGARRCARHGEDLSRFCEEDEAALCWVCD
70 80 90 100 110
120 130 140 150 160 170
pF1KE3 RSQEHRGHHTFLTEEVAREYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQIQYDK
. ::: :.: .:.: :::::: :::..:.. ..: ::.. .. . :: ......
CCDS16 AGPEHRTHRTAPLQEAAGSYQVKLQMALELMRKELEDALTQEANVGKKTVIWKEKVEMQR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 TNVLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSLRELISDLEHR
.::. : .: ::. .:. :: ::. :. : .:....:::...:.:: ..:..:
CCDS16 QRFRLEFEKHRGFLAQEEQRQLRRLEAEERATLQRLRESKSRLVQQSKALKELADELQER
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE3 LQGSVMELLQGVDGVIKRTENVTLKKPETFPKNQRRVFRAPDLKGMLEVFRELTDVRRYW
: .. ::.:: ::..:.. :: . :..: . . . : . .:. :. .::.
CCDS16 CQRPALGLLEGVRGVLSRSKAVTRLEAENIPMELKTACCIPGRRELLRKFQ--VDVKLDP
240 250 260 270 280 290
300 310 320 330 340
pF1KE3 GKEKSHYHKPPCGLSLLLSLSFRILCSLLGSCFKIYDSPSKTHITYPSL
CCDS16 ATAHPSLLLTADLRSVQDGEPWRDVPNNPERFDTWPCILGLQSFSSGRHYWEVLVGEGAE
300 310 320 330 340 350
347 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 08:28:55 2016 done: Sun Nov 6 08:28:55 2016
Total Scan time: 2.670 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]