FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3965, 332 aa
  1>>>pF1KE3965 332 - 332 aa - 332 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5212+/-0.00101; mu= 16.2081+/- 0.061
 mean_var=99.0693+/-20.716, 0's: 0 Z-trim(106.8): 64  B-trim: 493 in 1/48
 Lambda= 0.128856
 statistics sampled from 9160 (9220) to 9160 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.283), width:  16
 Scan time:  2.250

The best scores are:                                      opt bits E(32554)
CCDS9719.1 CGRRF1 gene_id:10668|Hs108|chr14        ( 332) 2246 428.0 5.3e-120


>>CCDS9719.1 CGRRF1 gene_id:10668|Hs108|chr14             (332 aa)
 initn: 2246 init1: 2246 opt: 2246  Z-score: 2267.9  bits: 428.0 E(32554): 5.3e-120
Smith-Waterman score: 2246; 99.7% identity (100.0% similar) in 332 aa overlap (1-332:1-332)

               10        20        30        40        50        60
pF1KE3 MAAVFLVTLYEYSPLFYIAVVFTCFIVTTGLVLGWFGWDVPVILRNSEETQFSTRVFKKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MAAVFLVTLYEYSPLFYIAVVFTCFIVTTGLVLGWFGWDVPVILRNSEETQFSTRVFKKQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 MRQVKNPFGLEITNPSSASITTGITLTTDCLEDSLLTCYWGCNVQKLYEALQKHVYCFRI
       ::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::
CCDS97 MRQVKNPFGLEITNPSSASITTGITLTTDCLEDSLLTCYWGCSVQKLYEALQKHVYCFRI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 STPQALEDALYSEYLYQEQYFIKKDSKEEIYCQLPRDTKIEDFGTVPRSRYPLVALLTLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 STPQALEDALYSEYLYQEQYFIKKDSKEEIYCQLPRDTKIEDFGTVPRSRYPLVALLTLA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 DEDDREIYDIISMVSVIHIPDRTYKLSCRILYQYLLLAQGQFHDLKQLFMSANNNFTPSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 DEDDREIYDIISMVSVIHIPDRTYKLSCRILYQYLLLAQGQFHDLKQLFMSANNNFTPSN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 NSSSEEKNTDRSLLEKVGLSESEVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 NSSSEEKNTDRSLLEKVGLSESEVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVK
              250       260       270       280       290       300

              310       320       330  
pF1KE3 YFQQCPMCRQFVQESFALCSQKEQDKDKPKTL
       ::::::::::::::::::::::::::::::::
CCDS97 YFQQCPMCRQFVQESFALCSQKEQDKDKPKTL
              310       320       330  




332 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:30:08 2016 done: Sun Nov  6 08:30:08 2016
 Total Scan time:  2.250 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]