FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3962, 511 aa
  1>>>pF1KE3962 511 - 511 aa - 511 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.1839+/-0.00109; mu= -12.8354+/- 0.065
 mean_var=661.6051+/-138.461, 0's: 0 Z-trim(118.4): 690  B-trim: 0 in 0/53
 Lambda= 0.049863
 statistics sampled from 18579 (19363) to 18579 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.836), E-opt: 0.2 (0.595), width:  16
 Scan time:  2.300

The best scores are:                                      opt bits E(32554)
CCDS12984.1 ZBTB45 gene_id:84878|Hs108|chr19       ( 511) 3593 273.1 5.4e-73


>>CCDS12984.1 ZBTB45 gene_id:84878|Hs108|chr19            (511 aa)
 initn: 3593 init1: 3593 opt: 3593  Z-score: 1424.0  bits: 273.1 E(32554): 5.4e-73
Smith-Waterman score: 3593; 100.0% identity (100.0% similar) in 511 aa overlap (1-511:1-511)

               10        20        30        40        50        60
pF1KE3 MAAAEAVHHIHLQNFSRSLLETLNGQRLGGHFCDVTVRIREASLRAHRCVLAAGSPFFQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAAAEAVHHIHLQNFSRSLLETLNGQRLGGHFCDVTVRIREASLRAHRCVLAAGSPFFQD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 KLLLGHSEIRVPPVVPAQTVRQLVEFLYSGSLVVAQGEALQVLTAASVLRIQTVIDECTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KLLLGHSEIRVPPVVPAQTVRQLVEFLYSGSLVVAQGEALQVLTAASVLRIQTVIDECTQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 IIARARAPGTSAPTPLPTPVPPPLAPAQLRHRLRHLLAARPPGHPGAAHSRKQRQPARLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IIARARAPGTSAPTPLPTPVPPPLAPAQLRHRLRHLLAARPPGHPGAAHSRKQRQPARLQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 LPAPPTPAKAEGPDADPSLSAAPDDRGDEDDEESDDETDGEDGEGGGPGEGQAPPSFPDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LPAPPTPAKAEGPDADPSLSAAPDDRGDEDDEESDDETDGEDGEGGGPGEGQAPPSFPDC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 AAGFLTAAADSACEEPPAPTGLADYSGAGRDFLRGAGSAEDVFPDSYVSTWHDEDGAVPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AAGFLTAAADSACEEPPAPTGLADYSGAGRDFLRGAGSAEDVFPDSYVSTWHDEDGAVPE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 GCPTETPVQPDCILSGSRPPGVKTPGPPVALFPFHLGAPGPPAPPPSAPSGPAPAPPPAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GCPTETPVQPDCILSGSRPPGVKTPGPPVALFPFHLGAPGPPAPPPSAPSGPAPAPPPAF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 YPTLQPEAAPSTQLGEVPAPSAAPTTAPSGTPARTPGAEPPTYECSHCRKTFSSRKNYTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 YPTLQPEAAPSTQLGEVPAPSAAPTTAPSGTPARTPGAEPPTYECSHCRKTFSSRKNYTK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 HMFIHSGEKPHQCAVCWRSFSLRDYLLKHMVTHTGVRAFQCAVCAKRFTQKSSLNVHMRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HMFIHSGEKPHQCAVCWRSFSLRDYLLKHMVTHTGVRAFQCAVCAKRFTQKSSLNVHMRT
              430       440       450       460       470       480

              490       500       510 
pF1KE3 HRPERAPCPACGKVFSHRALLERHLAAHPAP
       :::::::::::::::::::::::::::::::
CCDS12 HRPERAPCPACGKVFSHRALLERHLAAHPAP
              490       500       510 




511 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:32:00 2016 done: Sun Nov  6 08:32:01 2016
 Total Scan time:  2.300 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]