Result of FASTA (ccds) for
pFN21AE3960
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3960, 562 aa
1>>>pF1KE3960 562 - 562 aa - 562 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3873+/-0.000958; mu= 15.5658+/- 0.058
mean_var=140.3288+/-28.089, 0's: 0 Z-trim(109.7): 71 B-trim: 2 in 1/53
Lambda= 0.108268
statistics sampled from 10996 (11066) to 10996 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.34), width: 16
Scan time: 3.420
The best scores are: opt bits E(32554)
CCDS44200.1 TRIM45 gene_id:80263|Hs108|chr1 ( 562) 3893 620.0 2.4e-177
CCDS893.1 TRIM45 gene_id:80263|Hs108|chr1 ( 580) 2646 425.2 1e-118
CCDS47720.1 TRIM24 gene_id:8805|Hs108|chr7 (1016) 495 89.5 2.1e-17
CCDS5847.1 TRIM24 gene_id:8805|Hs108|chr7 (1050) 495 89.5 2.2e-17
CCDS873.1 TRIM33 gene_id:51592|Hs108|chr1 (1110) 443 81.4 6.3e-15
CCDS872.1 TRIM33 gene_id:51592|Hs108|chr1 (1127) 443 81.4 6.4e-15
CCDS7764.1 TRIM3 gene_id:10612|Hs108|chr11 ( 744) 363 68.7 2.8e-11
>>CCDS44200.1 TRIM45 gene_id:80263|Hs108|chr1 (562 aa)
initn: 3893 init1: 3893 opt: 3893 Z-score: 3297.5 bits: 620.0 E(32554): 2.4e-177
Smith-Waterman score: 3893; 99.5% identity (99.5% similar) in 562 aa overlap (1-562:1-562)
10 20 30 40 50 60
pF1KE3 MSENRKTLLGFVSKLTSGTALGNSGKTHCPLCLGLFKAPRLLPCLHTVCTTCLEQLEPFS
:::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MSENRKPLLGFVSKLTSGTALGNSGKTHCPLCLGLFKAPRLLPCLHTVCTTCLEQLEPFS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 VVDIRGGDSDTSSEGSIFQELKPRSLQSQIGILCPVCDAQVDLPMGGVKALTIDHLAVND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VVDIRGGDSDTSSEGSIFQELKPRSLQSQIGILCPVCDAQVDLPMGGVKALTIDHLAVND
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 VMLESLRGEGQGLVCDLCNDREVEKRCQTCKANLCHFCCQAHRRQKKTTYHTMVDLKDLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VMLESLRGEGQGLVCDLCNDREVEKRCQTCKANLCHFCCQAHRRQKKTTYHTMVDLKDLK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 GYSRIGKPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPCDFTSNVIHKHGDSVWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GYSRIGKPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPCDFTSNVIHKHGDSVWE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 LLKDTQPHVEALEEALAQIHIINSALQKRVEAVAADVRTFSEGYIKAIEEHRDKLLKQLE
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LLKGTQPHVEALEEALAQIHIINSALQKRVEAVAADVRTFSEGYIKAIEEHRDKLLKQLE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 DIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEILITKRVVVERLRKLNKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEILITKRVVVERLRKLNKV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 QYSTRPGVNDKIRFCPQEKAGQCRGYEIYDLHRAREKQTASFTLLCKDAAGEIMGRGGDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QYSTRPGVNDKIRFCPQEKAGQCRGYEIYDLHRAREKQTASFTLLCKDAAGEIMGRGGDN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 VQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVCIKEQHVQGSPFTVTVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
CCDS44 VQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVCIKEQHVQGSPFTVMVR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 RKHRPHSGVFHCCTFCSSGGQKTARCACGGTMPGGYLGCGHGHKGHPGHPHWSCCGKFNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RKHRPHSGVFHCCTFCSSGGQKTARCACGGTMPGGYLGCGHGHKGHPGHPHWSCCGKFNE
490 500 510 520 530 540
550 560
pF1KE3 KSECTWTGGQSAPRSLLRTVAL
::::::::::::::::::::::
CCDS44 KSECTWTGGQSAPRSLLRTVAL
550 560
>>CCDS893.1 TRIM45 gene_id:80263|Hs108|chr1 (580 aa)
initn: 2675 init1: 2644 opt: 2646 Z-score: 2244.6 bits: 425.2 E(32554): 1e-118
Smith-Waterman score: 3847; 96.4% identity (96.4% similar) in 580 aa overlap (1-562:1-580)
10 20 30 40 50 60
pF1KE3 MSENRKTLLGFVSKLTSGTALGNSGKTHCPLCLGLFKAPRLLPCLHTVCTTCLEQLEPFS
:::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 MSENRKPLLGFVSKLTSGTALGNSGKTHCPLCLGLFKAPRLLPCLHTVCTTCLEQLEPFS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 VVDIRGGDSDTSSEGSIFQELKPRSLQSQIGILCPVCDAQVDLPMGGVKALTIDHLAVND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 VVDIRGGDSDTSSEGSIFQELKPRSLQSQIGILCPVCDAQVDLPMGGVKALTIDHLAVND
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 VMLESLRGEGQGLVCDLCNDREVEKRCQTCKANLCHFCCQAHRRQKKTTYHTMVDLKDLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 VMLESLRGEGQGLVCDLCNDREVEKRCQTCKANLCHFCCQAHRRQKKTTYHTMVDLKDLK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 GYSRIGKPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPCDFTSNVIHKHGDSVWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 GYSRIGKPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPCDFTSNVIHKHGDSVWE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 LLKDTQPHVEALEEALAQIHIINSALQKRVEAVAADVRTFSEGYIKAIEEHRDKLLKQLE
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 LLKGTQPHVEALEEALAQIHIINSALQKRVEAVAADVRTFSEGYIKAIEEHRDKLLKQLE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 DIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEILITKRVVVERLRKLNKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 DIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEILITKRVVVERLRKLNKV
310 320 330 340 350 360
370 380 390 400
pF1KE3 QYSTRPGVNDKIRFCPQEKAGQCRGYEIY------------------DLHRAREKQTASF
::::::::::::::::::::::::::::: :::::::::::::
CCDS89 QYSTRPGVNDKIRFCPQEKAGQCRGYEIYGTINTKEVDPAKCVLQGEDLHRAREKQTASF
370 380 390 400 410 420
410 420 430 440 450 460
pF1KE3 TLLCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 TLLCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVW
430 440 450 460 470 480
470 480 490 500 510 520
pF1KE3 VCIKEQHVQGSPFTVTVRRKHRPHSGVFHCCTFCSSGGQKTARCACGGTMPGGYLGCGHG
::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::
CCDS89 VCIKEQHVQGSPFTVMVRRKHRPHSGVFHCCTFCSSGGQKTARCACGGTMPGGYLGCGHG
490 500 510 520 530 540
530 540 550 560
pF1KE3 HKGHPGHPHWSCCGKFNEKSECTWTGGQSAPRSLLRTVAL
::::::::::::::::::::::::::::::::::::::::
CCDS89 HKGHPGHPHWSCCGKFNEKSECTWTGGQSAPRSLLRTVAL
550 560 570 580
>>CCDS47720.1 TRIM24 gene_id:8805|Hs108|chr7 (1016 aa)
initn: 410 init1: 297 opt: 495 Z-score: 425.8 bits: 89.5 E(32554): 2.1e-17
Smith-Waterman score: 495; 27.9% identity (58.3% similar) in 369 aa overlap (29-375:56-408)
10 20 30 40 50
pF1KE3 MSENRKTLLGFVSKLTSGTALGNSGKTHCPLCLGLF--KAPRLLPCLHTVCTTCLEQL
: .: . .::.::::::. : ::
CCDS47 APSGENEAESRQGPDSERGGEAARLNLLDTCAVCHQNIQSRAPKLLPCLHSFCQRCLPAP
30 40 50 60 70 80
60 70 80 90 100 110
pF1KE3 EPFSVVDIRG-GDSDTS----SEGSIFQELKPRSLQSQIGIL-CPVCDAQVDLPMGGVKA
. . .. :...: . :: . .: . .:.:.. ::::. . ..
CCDS47 QRYLMLPAPMLGSAETPPPVPAPGSPVSGSSP--FATQVGVIRCPVCSQEC------AER
90 100 110 120 130
120 130 140 150 160
pF1KE3 LTIDHLAVNDVM-LESLRGEGQGLVCDLCNDR-EVEKRCQTCKANLCHFCCQAHRRQKKT
::.. :.:. . : : .. :: :.: :.. : : ::. : .::.: : :
CCDS47 HIIDNFFVKDTTEVPSSTVEKSNQVCTSCEDNAEANGFCVECVEWLCKTCIRAHQRVKFT
140 150 160 170 180 190
170 180 190 200 210 220
pF1KE3 TYHTMVDLKDLKGYSRIG----KPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPC
:: : :. . .: .:..:: : :.:.:.:: ::. .:.:: . ::.::
CCDS47 KDHT-VRQKEEVSPEAVGVTSQRPVFCPFHKKEQLKLYCETCDKLTCRDCQLLEHKEHRY
200 210 220 230 240 250
230 240 250 260 270
pF1KE3 DFTSNVIHKHGDSVWELLKDTQPHVEALEEALAQIHIINSALQKRV-------EAVAADV
.: ...... ... :: . : : :.. .. .:.:. . : :.
CCDS47 QFIEEAFQNQ-----KVIIDTL--ITKLMEKTKYIKFTGNQIQNRIIEVNQNQKQVEQDI
260 270 280 290 300
280 290 300 310 320 330
pF1KE3 RTFSEGYIKAIEEHRDKLLKQLEDIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTS
.. . :... ::.:::.. ... .:. :. .. : ... ..:.. ..:
CCDS47 KVAIFTLMVEINKKGKALLHQLESLAKDHRMKLMQQQQEVAGLSKQLEHVMHFSKWAVSS
310 320 330 340 350 360
340 350 360 370 380 390
pF1KE3 GSDLEILITKRVVVERLRKLNKVQYSTRPGVNDKIRF-CPQEKAGQCRGYEIYDLHRARE
::. .: .::... :::.: ... .. : .:. :.: :
CCDS47 GSSTALLYSKRLITYRLRHLLRARCDASPVTNNTIQFHCDPSFWAQNIINLGSLVIEDKE
370 380 390 400 410 420
400 410 420 430 440 450
pF1KE3 KQTASFTLLCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEP
CCDS47 SQPQMPKQNPVVEQNSQPPSGLSSNQLSKFPTQISLAQLRLQHMQQQQPPPRLINFQNHS
430 440 450 460 470 480
>>CCDS5847.1 TRIM24 gene_id:8805|Hs108|chr7 (1050 aa)
initn: 392 init1: 279 opt: 495 Z-score: 425.6 bits: 89.5 E(32554): 2.2e-17
Smith-Waterman score: 495; 27.9% identity (58.3% similar) in 369 aa overlap (29-375:56-408)
10 20 30 40 50
pF1KE3 MSENRKTLLGFVSKLTSGTALGNSGKTHCPLCLGLF--KAPRLLPCLHTVCTTCLEQL
: .: . .::.::::::. : ::
CCDS58 APSGENEAESRQGPDSERGGEAARLNLLDTCAVCHQNIQSRAPKLLPCLHSFCQRCLPAP
30 40 50 60 70 80
60 70 80 90 100 110
pF1KE3 EPFSVVDIRG-GDSDTS----SEGSIFQELKPRSLQSQIGIL-CPVCDAQVDLPMGGVKA
. . .. :...: . :: . .: . .:.:.. ::::. . ..
CCDS58 QRYLMLPAPMLGSAETPPPVPAPGSPVSGSSP--FATQVGVIRCPVCSQEC------AER
90 100 110 120 130
120 130 140 150 160
pF1KE3 LTIDHLAVNDVM-LESLRGEGQGLVCDLCNDR-EVEKRCQTCKANLCHFCCQAHRRQKKT
::.. :.:. . : : .. :: :.: :.. : : ::. : .::.: : :
CCDS58 HIIDNFFVKDTTEVPSSTVEKSNQVCTSCEDNAEANGFCVECVEWLCKTCIRAHQRVKFT
140 150 160 170 180 190
170 180 190 200 210 220
pF1KE3 TYHTMVDLKDLKGYSRIG----KPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPC
:: : :. . .: .:..:: : :.:.:.:: ::. .:.:: . ::.::
CCDS58 KDHT-VRQKEEVSPEAVGVTSQRPVFCPFHKKEQLKLYCETCDKLTCRDCQLLEHKEHRY
200 210 220 230 240 250
230 240 250 260 270
pF1KE3 DFTSNVIHKHGDSVWELLKDTQPHVEALEEALAQIHIINSALQKRV-------EAVAADV
.: ...... ... :: . : : :.. .. .:.:. . : :.
CCDS58 QFIEEAFQNQ-----KVIIDTL--ITKLMEKTKYIKFTGNQIQNRIIEVNQNQKQVEQDI
260 270 280 290 300
280 290 300 310 320 330
pF1KE3 RTFSEGYIKAIEEHRDKLLKQLEDIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTS
.. . :... ::.:::.. ... .:. :. .. : ... ..:.. ..:
CCDS58 KVAIFTLMVEINKKGKALLHQLESLAKDHRMKLMQQQQEVAGLSKQLEHVMHFSKWAVSS
310 320 330 340 350 360
340 350 360 370 380 390
pF1KE3 GSDLEILITKRVVVERLRKLNKVQYSTRPGVNDKIRF-CPQEKAGQCRGYEIYDLHRARE
::. .: .::... :::.: ... .. : .:. :.: :
CCDS58 GSSTALLYSKRLITYRLRHLLRARCDASPVTNNTIQFHCDPSFWAQNIINLGSLVIEDKE
370 380 390 400 410 420
400 410 420 430 440 450
pF1KE3 KQTASFTLLCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEP
CCDS58 SQPQMPKQNPVVEQNSQPPSGLSSNQLSKFPTQISLAQLRLQHMQQQVMAQRQQVQRRPA
430 440 450 460 470 480
>>CCDS873.1 TRIM33 gene_id:51592|Hs108|chr1 (1110 aa)
initn: 454 init1: 334 opt: 443 Z-score: 381.4 bits: 81.4 E(32554): 6.3e-15
Smith-Waterman score: 518; 29.1% identity (57.1% similar) in 361 aa overlap (29-375:125-461)
10 20 30 40 50
pF1KE3 MSENRKTLLGFVSKLTSGTALGNSGKTHCPLCLGLFKA-----PRLLPCLHTVCTTCL
: .: ... :.::::::. : ::
CCDS87 STPAPAPASAPAPGPSAGPPPGPPASLLDTCAVCQQSLQSRREAEPKLLPCLHSFCLRCL
100 110 120 130 140 150
60 70 80 90 100
pF1KE3 EQLEPFSVVDIRGGDSDTSSEGSIFQELKPRSLQSQIGIL-CPVCDA---QVDLPMGGVK
. : : : :: :.:.: .:.:.. :::: :.::
CCDS87 PEPERQLSVPIPGG-----SNGDI----------QQVGVIRCPVCRQECRQIDL------
160 170 180 190
110 120 130 140 150 160
pF1KE3 ALTIDHLAVNDVM-LESLRGEGQGLVCDLCNDREVE-KRCQTCKANLCHFCCQAHRRQKK
.:. :.:. : : . :: :.: : : ::. : .::.: :
CCDS87 ---VDNYFVKDTSEAPSSSDEKSEQVCTSCEDNASAVGFCVECGEWLCKTCIEAHQRVKF
200 210 220 230 240 250
170 180 190 200 210 220
pF1KE3 TTYHTMVDLKDL-KGYSRIG-KPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPCD
: : . .:. .. . : .:..:::: :.:.:::: ::: .:.:: . ::.:: .
CCDS87 TKDHLIRKKEDVSESVGASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHRYQ
260 270 280 290 300 310
230 240 250 260 270 280
pF1KE3 FTSNVIHKHGDSVWELLKDTQPHVEALEEALAQIHIINSALQKRVEAVAADVRTFSEGYI
: ...... .. .:: . . .. : .:.. . ... . : .... :
CCDS87 FLEEAFQNQKGAIENLLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLI
320 330 340 350 360 370
290 300 310 320 330 340
pF1KE3 KAIEEHRDKLLKQLEDIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEILI
. :... .::.:::.. ... .: :. .. : ... ..::. ..:::. .:
CCDS87 NEINKKGKSLLQQLENVTKERQMKLLQQQNDITGLSRQVKHVMNFTNWAIASGSSTALLY
380 390 400 410 420 430
350 360 370 380 390 400
pF1KE3 TKRVVVERLRKLNKVQYSTRPGVNDKIRF-CPQEKAGQCRGYEIYDLHRAREKQTASFTL
.::... .::.. :.. . :..: ::: :
CCDS87 SKRLITFQLRHILKARCDPVPAANGAIRFHCDPTFWAKNVVNLGNLVIESKPAPGYTPNV
440 450 460 470 480 490
410 420 430 440 450 460
pF1KE3 LCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVC
CCDS87 VVGQVPPGTNHISKTPGQINLAQLRLQHMQQQVYAQKHQQLQQMRMQQPPAPVPTTTTTT
500 510 520 530 540 550
>>CCDS872.1 TRIM33 gene_id:51592|Hs108|chr1 (1127 aa)
initn: 454 init1: 334 opt: 443 Z-score: 381.3 bits: 81.4 E(32554): 6.4e-15
Smith-Waterman score: 518; 29.1% identity (57.1% similar) in 361 aa overlap (29-375:125-461)
10 20 30 40 50
pF1KE3 MSENRKTLLGFVSKLTSGTALGNSGKTHCPLCLGLFKA-----PRLLPCLHTVCTTCL
: .: ... :.::::::. : ::
CCDS87 STPAPAPASAPAPGPSAGPPPGPPASLLDTCAVCQQSLQSRREAEPKLLPCLHSFCLRCL
100 110 120 130 140 150
60 70 80 90 100
pF1KE3 EQLEPFSVVDIRGGDSDTSSEGSIFQELKPRSLQSQIGIL-CPVCDA---QVDLPMGGVK
. : : : :: :.:.: .:.:.. :::: :.::
CCDS87 PEPERQLSVPIPGG-----SNGDI----------QQVGVIRCPVCRQECRQIDL------
160 170 180 190
110 120 130 140 150 160
pF1KE3 ALTIDHLAVNDVM-LESLRGEGQGLVCDLCNDREVE-KRCQTCKANLCHFCCQAHRRQKK
.:. :.:. : : . :: :.: : : ::. : .::.: :
CCDS87 ---VDNYFVKDTSEAPSSSDEKSEQVCTSCEDNASAVGFCVECGEWLCKTCIEAHQRVKF
200 210 220 230 240 250
170 180 190 200 210 220
pF1KE3 TTYHTMVDLKDL-KGYSRIG-KPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPCD
: : . .:. .. . : .:..:::: :.:.:::: ::: .:.:: . ::.:: .
CCDS87 TKDHLIRKKEDVSESVGASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHRYQ
260 270 280 290 300 310
230 240 250 260 270 280
pF1KE3 FTSNVIHKHGDSVWELLKDTQPHVEALEEALAQIHIINSALQKRVEAVAADVRTFSEGYI
: ...... .. .:: . . .. : .:.. . ... . : .... :
CCDS87 FLEEAFQNQKGAIENLLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLI
320 330 340 350 360 370
290 300 310 320 330 340
pF1KE3 KAIEEHRDKLLKQLEDIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEILI
. :... .::.:::.. ... .: :. .. : ... ..::. ..:::. .:
CCDS87 NEINKKGKSLLQQLENVTKERQMKLLQQQNDITGLSRQVKHVMNFTNWAIASGSSTALLY
380 390 400 410 420 430
350 360 370 380 390 400
pF1KE3 TKRVVVERLRKLNKVQYSTRPGVNDKIRF-CPQEKAGQCRGYEIYDLHRAREKQTASFTL
.::... .::.. :.. . :..: ::: :
CCDS87 SKRLITFQLRHILKARCDPVPAANGAIRFHCDPTFWAKNVVNLGNLVIESKPAPGYTPNV
440 450 460 470 480 490
410 420 430 440 450 460
pF1KE3 LCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVC
CCDS87 VVGQVPPGTNHISKTPGQINLAQLRLQHMQQQVYAQKHQQLQQMRMQQPPAPVPTTTTTT
500 510 520 530 540 550
>>CCDS7764.1 TRIM3 gene_id:10612|Hs108|chr11 (744 aa)
initn: 563 init1: 321 opt: 363 Z-score: 316.1 bits: 68.7 E(32554): 2.8e-11
Smith-Waterman score: 468; 25.3% identity (48.5% similar) in 549 aa overlap (29-555:22-497)
10 20 30 40 50 60
pF1KE3 MSENRKTLLGFVSKLTSGTALGNSGKTHCPLCLGLFKAPRLLPCLHTVCTTCLEQLEPFS
: .:: .. :..:::::: : ::.. :
CCDS77 MAKREDSPGPEVQPMDKQFLVCSICLDRYQCPKVLPCLHTFCERCLQNYIP--
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 VVDIRGGDSDTSSEGSIFQELKPRSLQSQIGILCPVCDAQVDLPMGGVKALTIDHLAVND
:: . . :::: :: ::.:: ... ...
CCDS77 -------------------------AQS-LTLSCPVCRQTSILPEQGVSALQ-NNFFISS
60 70 80
130 140 150 160 170 180
pF1KE3 VMLESLRGEGQGLVCDLCNDREVEKRCQTCKANLCHFCCQAHRRQKKTTYHTMVDLKDLK
.: :... .: :: : .: .
CCDS77 LM-EAMQQAPDG----------------------------AH------------DPEDPH
90 100
190 200 210 220 230
pF1KE3 GYSRI-GKPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREHPCDFTSNVIHKHGDSVW
: . :.:. :: : .. ....:: :. .: .: .:::::: . .:...: ..
CCDS77 PLSVVAGRPLSCPNHEGKTMEFYCEACETAMCGECRAGEHREHGTVLLRDVVEQHKAALQ
110 120 130 140 150 160
240 250 260 270 280 290
pF1KE3 ELLKDTQPHVEALEEALAQIHIINSALQKRVEAVAADVRTFSEGYIKAIEEHRDKLLKQL
. :. .. .. : :.: . :.. ::.: . :.. . : .:...... :...:
CCDS77 RQLEAVRGRLPQLSAAIALVGGISQQLQERKAEALAQISAAFEDLEQALQQRKQALVSDL
170 180 190 200 210 220
300 310 320 330 340 350
pF1KE3 EDIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEILITKRVVVERLRKLNK
: : . :.. :: : :.: . .. :.:. : :: :.:.... . ::: :
CCDS77 ETICGAKQKVLQSQLDTLRQGQEHIGSSCSFAEQALRLGSAPEVLLVRKHMRERLAALAA
230 240 250 260 270 280
360 370 380 390 400
pF1KE3 VQYSTRPGVNDKIRFCPQEKAGQCRG--------------YEIY----DLHRAREKQTAS
. :: : .... : : :. .: :..: : ::
CCDS77 QAFPERPHENAQLELV-LEVDGLRRSVLNLGALLTTSATAHETVATGEGLRQALVGQPAS
290 300 310 320 330 340
410 420 430 440 450 460
pF1KE3 FTLLCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTV
.:. :: :... :. .... .. : :: : :.:.::: . :: . : .
CCDS77 LTVTTKDKDGRLVRTGSAELRAEITGPDGTRLPV--PVVDHKNGTYELVYTARTEGELLL
350 360 370 380 390 400
470 480 490 500 510 520
pF1KE3 WVCIKEQHVQGSPFTV-TVRRKHRPHSGVFHCCTFCSSGGQKTARCACGGTMPGGYLGCG
: . : :.:::: : ..: : : : :: . . :... . :
CCDS77 SVLLYGQPVRGSPFRVRALRPGDLPPSPDDVKRRVKSPGGPGSHVRQKAVRRPSSMYSTG
410 420 430 440 450 460
530 540 550 560
pF1KE3 HGHKGHPGHPH--WSCCGKFNEKSECTWTGGQSAPRSLLRTVAL
.: .: . . . .. ::.: : : :: :
CCDS77 GKRKDNPIEDELVFRVGSRGREKGEFTNLQGVSAASSGRIVVADSNNQCIQVFSNEGQFK
470 480 490 500 510 520
CCDS77 FRFGVRGRSPGQLQRPTGVAVDTNGDIIVADYDNRWVSIFSPEGKFKTKIGAGRLMGPKG
530 540 550 560 570 580
562 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 08:33:55 2016 done: Sun Nov 6 08:33:56 2016
Total Scan time: 3.420 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]