Result of FASTA (omim) for
pFN21AE3946
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3946, 291 aa
1>>>pF1KE3946 291 - 291 aa - 291 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3765+/-0.000382; mu= 10.4779+/- 0.024
mean_var=92.6163+/-18.355, 0's: 0 Z-trim(114.5): 8 B-trim: 248 in 1/49
Lambda= 0.133269
statistics sampled from 24364 (24372) to 24364 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.286), width: 16
Scan time: 7.210
The best scores are: opt bits E(85289)
NP_219484 (OMIM: 612981) U3 small nucleolar ribonu ( 291) 1939 382.8 4.1e-106
NP_001307233 (OMIM: 612981) U3 small nucleolar rib ( 289) 1911 377.5 1.7e-104
NP_001307235 (OMIM: 612981) U3 small nucleolar rib ( 236) 1533 304.7 1.1e-82
NP_001307236 (OMIM: 612981) U3 small nucleolar rib ( 236) 1533 304.7 1.1e-82
NP_001307238 (OMIM: 612981) U3 small nucleolar rib ( 206) 1388 276.8 2.4e-74
NP_001307239 (OMIM: 612981) U3 small nucleolar rib ( 206) 1388 276.8 2.4e-74
NP_001307240 (OMIM: 612981) U3 small nucleolar rib ( 203) 1355 270.5 1.9e-72
NP_001307234 (OMIM: 612981) U3 small nucleolar rib ( 273) 1303 260.5 2.5e-69
>>NP_219484 (OMIM: 612981) U3 small nucleolar ribonucleo (291 aa)
initn: 1939 init1: 1939 opt: 1939 Z-score: 2026.1 bits: 382.8 E(85289): 4.1e-106
Smith-Waterman score: 1939; 100.0% identity (100.0% similar) in 291 aa overlap (1-291:1-291)
10 20 30 40 50 60
pF1KE3 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_219 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 DAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_219 DAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_219 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_219 EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 NVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_219 NVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE
250 260 270 280 290
>>NP_001307233 (OMIM: 612981) U3 small nucleolar ribonuc (289 aa)
initn: 1531 init1: 1531 opt: 1911 Z-score: 1997.0 bits: 377.5 E(85289): 1.7e-104
Smith-Waterman score: 1911; 99.3% identity (99.3% similar) in 291 aa overlap (1-291:1-289)
10 20 30 40 50 60
pF1KE3 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 DAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE
::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAG--GVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE
70 80 90 100 110
130 140 150 160 170 180
pF1KE3 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE3 EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR
180 190 200 210 220 230
250 260 270 280 290
pF1KE3 NVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE
240 250 260 270 280
>>NP_001307235 (OMIM: 612981) U3 small nucleolar ribonuc (236 aa)
initn: 1533 init1: 1533 opt: 1533 Z-score: 1605.6 bits: 304.7 E(85289): 1.1e-82
Smith-Waterman score: 1533; 99.6% identity (100.0% similar) in 227 aa overlap (65-291:10-236)
40 50 60 70 80 90
pF1KE3 ALEENRLIPTELRREALALQGSLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPS
.:::::::::::::::::::::::::::::
NP_001 MMLEVKVTIQGVTSHVDDEYRWAGVEDPKVMITTSRDPS
10 20 30
100 110 120 130 140 150
pF1KE3 SRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHL
40 50 60 70 80 90
160 170 180 190 200 210
pF1KE3 PFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDS
100 110 120 130 140 150
220 230 240 250 260 270
pF1KE3 HRVITFANQDDYISFRHHVYKKTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HRVITFANQDDYISFRHHVYKKTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWR
160 170 180 190 200 210
280 290
pF1KE3 WHPYTNTARKRVFLSTE
:::::::::::::::::
NP_001 WHPYTNTARKRVFLSTE
220 230
>>NP_001307236 (OMIM: 612981) U3 small nucleolar ribonuc (236 aa)
initn: 1533 init1: 1533 opt: 1533 Z-score: 1605.6 bits: 304.7 E(85289): 1.1e-82
Smith-Waterman score: 1533; 99.6% identity (100.0% similar) in 227 aa overlap (65-291:10-236)
40 50 60 70 80 90
pF1KE3 ALEENRLIPTELRREALALQGSLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPS
.:::::::::::::::::::::::::::::
NP_001 MMLEVKVTIQGVTSHVDDEYRWAGVEDPKVMITTSRDPS
10 20 30
100 110 120 130 140 150
pF1KE3 SRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHL
40 50 60 70 80 90
160 170 180 190 200 210
pF1KE3 PFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDS
100 110 120 130 140 150
220 230 240 250 260 270
pF1KE3 HRVITFANQDDYISFRHHVYKKTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HRVITFANQDDYISFRHHVYKKTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWR
160 170 180 190 200 210
280 290
pF1KE3 WHPYTNTARKRVFLSTE
:::::::::::::::::
NP_001 WHPYTNTARKRVFLSTE
220 230
>>NP_001307238 (OMIM: 612981) U3 small nucleolar ribonuc (206 aa)
initn: 1388 init1: 1388 opt: 1388 Z-score: 1455.8 bits: 276.8 E(85289): 2.4e-74
Smith-Waterman score: 1388; 100.0% identity (100.0% similar) in 206 aa overlap (86-291:1-206)
60 70 80 90 100 110
pF1KE3 SLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMN
::::::::::::::::::::::::::::::
NP_001 MITTSRDPSSRLKMFAKELKLVFPGAQRMN
10 20 30
120 130 140 150 160 170
pF1KE3 RGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD
40 50 60 70 80 90
180 190 200 210 220 230
pF1KE3 LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYK
100 110 120 130 140 150
240 250 260 270 280 290
pF1KE3 KTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE
160 170 180 190 200
>>NP_001307239 (OMIM: 612981) U3 small nucleolar ribonuc (206 aa)
initn: 1388 init1: 1388 opt: 1388 Z-score: 1455.8 bits: 276.8 E(85289): 2.4e-74
Smith-Waterman score: 1388; 100.0% identity (100.0% similar) in 206 aa overlap (86-291:1-206)
60 70 80 90 100 110
pF1KE3 SLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMN
::::::::::::::::::::::::::::::
NP_001 MITTSRDPSSRLKMFAKELKLVFPGAQRMN
10 20 30
120 130 140 150 160 170
pF1KE3 RGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD
40 50 60 70 80 90
180 190 200 210 220 230
pF1KE3 LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYK
100 110 120 130 140 150
240 250 260 270 280 290
pF1KE3 KTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE
160 170 180 190 200
>>NP_001307240 (OMIM: 612981) U3 small nucleolar ribonuc (203 aa)
initn: 1271 init1: 1271 opt: 1355 Z-score: 1421.7 bits: 270.5 E(85289): 1.9e-72
Smith-Waterman score: 1355; 98.5% identity (98.5% similar) in 206 aa overlap (86-291:1-203)
60 70 80 90 100 110
pF1KE3 SLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMN
::::::::::::::::: ::::::::::
NP_001 MITTSRDPSSRLKMFAK---LVFPGAQRMN
10 20
120 130 140 150 160 170
pF1KE3 RGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD
30 40 50 60 70 80
180 190 200 210 220 230
pF1KE3 LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYK
90 100 110 120 130 140
240 250 260 270 280 290
pF1KE3 KTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE
150 160 170 180 190 200
>>NP_001307234 (OMIM: 612981) U3 small nucleolar ribonuc (273 aa)
initn: 1288 init1: 1288 opt: 1303 Z-score: 1365.7 bits: 260.5 E(85289): 2.5e-69
Smith-Waterman score: 1782; 93.8% identity (93.8% similar) in 291 aa overlap (1-291:1-273)
10 20 30 40 50 60
pF1KE3 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 DAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE
:::::::::::::::::::::::: ::::::::::::::::::
NP_001 DAGGEGVTSHVDDEYRWAGVEDPK------------------ELKLVFPGAQRMNRGRHE
70 80 90 100
130 140 150 160 170 180
pF1KE3 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE3 EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR
170 180 190 200 210 220
250 260 270 280 290
pF1KE3 NVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE
230 240 250 260 270
291 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 08:42:01 2016 done: Sun Nov 6 08:42:02 2016
Total Scan time: 7.210 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]