FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3940, 148 aa
  1>>>pF1KE3940 148 - 148 aa - 148 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0976+/-0.000887; mu= 12.3523+/- 0.053
 mean_var=55.6887+/-11.094, 0's: 0 Z-trim(104.3): 9  B-trim: 0 in 0/49
 Lambda= 0.171866
 statistics sampled from 7839 (7841) to 7839 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.632), E-opt: 0.2 (0.241), width:  16
 Scan time:  1.660

The best scores are:                                      opt bits E(32554)
CCDS5866.1 SSBP1 gene_id:6742|Hs108|chr7           ( 148)  963 246.7 3.9e-66


>>CCDS5866.1 SSBP1 gene_id:6742|Hs108|chr7                (148 aa)
 initn: 963 init1: 963 opt: 963  Z-score: 1300.9  bits: 246.7 E(32554): 3.9e-66
Smith-Waterman score: 963; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148)

               10        20        30        40        50        60
pF1KE3 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM
               70        80        90       100       110       120

              130       140        
pF1KE3 DKNNVRRQATTIIADNIIFLSDQTKEKE
       ::::::::::::::::::::::::::::
CCDS58 DKNNVRRQATTIIADNIIFLSDQTKEKE
              130       140        




148 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:45:37 2016 done: Sun Nov  6 08:45:37 2016
 Total Scan time:  1.660 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]