FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3933, 221 aa
  1>>>pF1KE3933 221 - 221 aa - 221 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4876+/-0.000656; mu= 16.7751+/- 0.040
 mean_var=142.0528+/-29.076, 0's: 0 Z-trim(116.7): 92  B-trim: 0 in 0/51
 Lambda= 0.107609
 statistics sampled from 17255 (17358) to 17255 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.837), E-opt: 0.2 (0.533), width:  16
 Scan time:  2.280

The best scores are:                                      opt bits E(32554)
CCDS4464.1 TRIM7 gene_id:81786|Hs108|chr5          ( 221) 1525 246.9 7.7e-66
CCDS4462.1 TRIM7 gene_id:81786|Hs108|chr5          ( 511) 1418 230.7 1.3e-60


>>CCDS4464.1 TRIM7 gene_id:81786|Hs108|chr5               (221 aa)
 initn: 1525 init1: 1525 opt: 1525  Z-score: 1295.5  bits: 246.9 E(32554): 7.7e-66
Smith-Waterman score: 1525; 99.5% identity (100.0% similar) in 221 aa overlap (1-221:1-221)

               10        20        30        40        50        60
pF1KE3 MAAVGPRTGPGTGAEALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAAVGPRTGPGTGAEALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 GAGSVGAATRAPPFPLPCPQCREPARPSQLRPNRELAAVATLLRRFSLPAAAPGEHGSQA
       ::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
CCDS44 GAGSVGAATRAPPFPLPCPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 AAARAAAARCGQHGEPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AAARAAAARCGQHGEPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESR
              130       140       150       160       170       180

              190       200       210       220 
pF1KE3 LRVLKKELEDCEVFRSTEKKESKELLVSQAPAGPPWDITEA
       :::::::::::::::::::::::::::::::::::::::::
CCDS44 LRVLKKELEDCEVFRSTEKKESKELLVSQAPAGPPWDITEA
              190       200       210       220 

>>CCDS4462.1 TRIM7 gene_id:81786|Hs108|chr5               (511 aa)
 initn: 1438 init1: 1418 opt: 1418  Z-score: 1201.9  bits: 230.7 E(32554): 1.3e-60
Smith-Waterman score: 1418; 98.1% identity (99.5% similar) in 210 aa overlap (1-210:1-210)

               10        20        30        40        50        60
pF1KE3 MAAVGPRTGPGTGAEALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAAVGPRTGPGTGAEALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 GAGSVGAATRAPPFPLPCPQCREPARPSQLRPNRELAAVATLLRRFSLPAAAPGEHGSQA
       ::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
CCDS44 GAGSVGAATRAPPFPLPCPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 AAARAAAARCGQHGEPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AAARAAAARCGQHGEPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESR
              130       140       150       160       170       180

              190       200       210       220                    
pF1KE3 LRVLKKELEDCEVFRSTEKKESKELLVSQAPAGPPWDITEA                   
       :::::::::::::::::::::::::: ..:                              
CCDS44 LRVLKKELEDCEVFRSTEKKESKELLKQMAAEQEKVGAEFQALRAFLVEQEGRLLGRLEE
              190       200       210       220       230       240




221 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:49:17 2016 done: Sun Nov  6 08:49:17 2016
 Total Scan time:  2.280 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]