Result of FASTA (omim) for
pFN21AE3924
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3924, 346 aa
1>>>pF1KE3924 346 - 346 aa - 346 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8676+/-0.000337; mu= 20.9446+/- 0.021
mean_var=155.6799+/-33.932, 0's: 0 Z-trim(118.4): 203 B-trim: 5 in 1/52
Lambda= 0.102792
statistics sampled from 31077 (31405) to 31077 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.368), width: 16
Scan time: 7.890
The best scores are: opt bits E(85289)
NP_722540 (OMIM: 602859,614870,614871) peroxisome ( 346) 2361 361.9 1.1e-99
XP_011539875 (OMIM: 602859,614870,614871) PREDICTE ( 345) 2342 359.1 7.9e-99
NP_002608 (OMIM: 602859,614870,614871) peroxisome ( 326) 1346 211.4 2.2e-54
XP_011539878 (OMIM: 602859,614870,614871) PREDICTE ( 200) 1329 208.5 1e-53
>>NP_722540 (OMIM: 602859,614870,614871) peroxisome biog (346 aa)
initn: 2361 init1: 2361 opt: 2361 Z-score: 1910.5 bits: 361.9 E(85289): 1.1e-99
Smith-Waterman score: 2361; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346)
10 20 30 40 50 60
pF1KE3 MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_722 MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_722 TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_722 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 WFYIHGVFYHLAKRLTGITYQALRPDPLRVLMSVAPSALQLRVRSLPGEDLRARVSYRLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_722 WFYIHGVFYHLAKRLTGITYQALRPDPLRVLMSVAPSALQLRVRSLPGEDLRARVSYRLL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 GVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_722 GVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEER
250 260 270 280 290 300
310 320 330 340
pF1KE3 RHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR
::::::::::::::::::::::::::::::::::::::::::::::
NP_722 RHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR
310 320 330 340
>>XP_011539875 (OMIM: 602859,614870,614871) PREDICTED: p (345 aa)
initn: 2340 init1: 1337 opt: 2342 Z-score: 1895.2 bits: 359.1 E(85289): 7.9e-99
Smith-Waterman score: 2342; 99.7% identity (99.7% similar) in 346 aa overlap (1-346:1-345)
10 20 30 40 50 60
pF1KE3 MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 WFYIHGVFYHLAKRLTGITYQALRPDPLRVLMSVAPSALQLRVRSLPGEDLRARVSYRLL
:::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
XP_011 WFYIHGVFYHLAKRLTGITY-ALRPDPLRVLMSVAPSALQLRVRSLPGEDLRARVSYRLL
190 200 210 220 230
250 260 270 280 290 300
pF1KE3 GVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEER
240 250 260 270 280 290
310 320 330 340
pF1KE3 RHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR
::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR
300 310 320 330 340
>>NP_002608 (OMIM: 602859,614870,614871) peroxisome biog (326 aa)
initn: 1341 init1: 1341 opt: 1346 Z-score: 1097.2 bits: 211.4 E(85289): 2.2e-54
Smith-Waterman score: 2183; 94.2% identity (94.2% similar) in 346 aa overlap (1-346:1-326)
10 20 30 40 50 60
pF1KE3 MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 WFYIHGVFYHLAKRLTGITYQALRPDPLRVLMSVAPSALQLRVRSLPGEDLRARVSYRLL
:::::::::::::::::::: ::::::::::::::::::::
NP_002 WFYIHGVFYHLAKRLTGITY--------------------LRVRSLPGEDLRARVSYRLL
190 200 210 220
250 260 270 280 290 300
pF1KE3 GVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEER
230 240 250 260 270 280
310 320 330 340
pF1KE3 RHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR
::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR
290 300 310 320
>>XP_011539878 (OMIM: 602859,614870,614871) PREDICTED: p (200 aa)
initn: 1329 init1: 1329 opt: 1329 Z-score: 1085.5 bits: 208.5 E(85289): 1e-53
Smith-Waterman score: 1329; 100.0% identity (100.0% similar) in 199 aa overlap (1-199:1-199)
10 20 30 40 50 60
pF1KE3 MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 WFYIHGVFYHLAKRLTGITYQALRPDPLRVLMSVAPSALQLRVRSLPGEDLRARVSYRLL
:::::::::::::::::::
XP_011 WFYIHGVFYHLAKRLTGITR
190 200
346 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 08:54:00 2016 done: Sun Nov 6 08:54:01 2016
Total Scan time: 7.890 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]