FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3924, 346 aa
  1>>>pF1KE3924 346 - 346 aa - 346 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5592+/-0.000823; mu= 16.7152+/- 0.049
 mean_var=138.2770+/-29.342, 0's: 0 Z-trim(111.6): 112  B-trim: 0 in 0/50
 Lambda= 0.109068
 statistics sampled from 12416 (12542) to 12416 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.385), width:  16
 Scan time:  3.050

The best scores are:                                      opt bits E(32554)
CCDS41.1 PEX10 gene_id:5192|Hs108|chr1             ( 346) 2361 382.8 2.2e-106
CCDS44045.1 PEX10 gene_id:5192|Hs108|chr1          ( 326) 1346 223.1 2.5e-58


>>CCDS41.1 PEX10 gene_id:5192|Hs108|chr1                  (346 aa)
 initn: 2361 init1: 2361 opt: 2361  Z-score: 2023.4  bits: 382.8 E(32554): 2.2e-106
Smith-Waterman score: 2361; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346)

               10        20        30        40        50        60
pF1KE3 MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 WFYIHGVFYHLAKRLTGITYQALRPDPLRVLMSVAPSALQLRVRSLPGEDLRARVSYRLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 WFYIHGVFYHLAKRLTGITYQALRPDPLRVLMSVAPSALQLRVRSLPGEDLRARVSYRLL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 GVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEER
              250       260       270       280       290       300

              310       320       330       340      
pF1KE3 RHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR
              310       320       330       340      

>>CCDS44045.1 PEX10 gene_id:5192|Hs108|chr1               (326 aa)
 initn: 1341 init1: 1341 opt: 1346  Z-score: 1160.5  bits: 223.1 E(32554): 2.5e-58
Smith-Waterman score: 2183; 94.2% identity (94.2% similar) in 346 aa overlap (1-346:1-326)

               10        20        30        40        50        60
pF1KE3 MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 WFYIHGVFYHLAKRLTGITYQALRPDPLRVLMSVAPSALQLRVRSLPGEDLRARVSYRLL
       ::::::::::::::::::::                    ::::::::::::::::::::
CCDS44 WFYIHGVFYHLAKRLTGITY--------------------LRVRSLPGEDLRARVSYRLL
              190       200                           210       220

              250       260       270       280       290       300
pF1KE3 GVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEER
              230       240       250       260       270       280

              310       320       330       340      
pF1KE3 RHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR
              290       300       310       320      




346 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:53:59 2016 done: Sun Nov  6 08:54:00 2016
 Total Scan time:  3.050 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]