FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3921, 399 aa
  1>>>pF1KE3921 399 - 399 aa - 399 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2778+/-0.00105; mu= 14.0375+/- 0.064
 mean_var=129.2959+/-26.535, 0's: 0 Z-trim(108.6): 28  B-trim: 352 in 1/49
 Lambda= 0.112793
 statistics sampled from 10310 (10326) to 10310 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.317), width:  16
 Scan time:  2.860

The best scores are:                                      opt bits E(32554)
CCDS430.1 RRAGC gene_id:64121|Hs108|chr1           ( 399) 2631 439.5 2.6e-123
CCDS5022.1 RRAGD gene_id:58528|Hs108|chr6          ( 400) 1957 329.8 2.7e-90


>>CCDS430.1 RRAGC gene_id:64121|Hs108|chr1                (399 aa)
 initn: 2631 init1: 2631 opt: 2631  Z-score: 2327.4  bits: 439.5 E(32554): 2.6e-123
Smith-Waterman score: 2631; 100.0% identity (100.0% similar) in 399 aa overlap (1-399:1-399)

               10        20        30        40        50        60
pF1KE3 MSLQYGAEETPLAGSYGAADSFPKDFGYGVEEEEEEAAAAGGGVGAGAGGGCGPGGADSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MSLQYGAEETPLAGSYGAADSFPKDFGYGVEEEEEEAAAAGGGVGAGAGGGCGPGGADSS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 MDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 DGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIFEAFSKVVQKLIPQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIFEAFSKVVQKLIPQL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 PTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDVSCIYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDVSCIYG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 LKEDGSGSAYDKESMAIIKLNNTTVLYLKEVTKFLALVCILREESFERKGLIDYNFHCFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LKEDGSGSAYDKESMAIIKLNNTTVLYLKEVTKFLALVCILREESFERKGLIDYNFHCFR
              310       320       330       340       350       360

              370       380       390         
pF1KE3 KAIHEVFEVGVTSHRSCGHQTSASSLKALTHNGTPRNAI
       :::::::::::::::::::::::::::::::::::::::
CCDS43 KAIHEVFEVGVTSHRSCGHQTSASSLKALTHNGTPRNAI
              370       380       390         

>>CCDS5022.1 RRAGD gene_id:58528|Hs108|chr6               (400 aa)
 initn: 1980 init1: 1953 opt: 1957  Z-score: 1734.6  bits: 329.8 E(32554): 2.7e-90
Smith-Waterman score: 1966; 79.9% identity (87.1% similar) in 388 aa overlap (23-396:10-397)

               10        20        30            40           50   
pF1KE3 MSLQYGAEETPLAGSYGAADSFPKDFGYGVEEEEEEA----AAAGGG---VGAGAGGGCG
                             :.:   . :::::.     :  : :     :   .:  
CCDS50              MSQVLGKPQPQDEDDAEEEEEEDELVGLADYGDGPDSSDADPDSGTE
                            10        20        30        40       

            60               70        80        90       100      
pF1KE3 PGGADSS-------KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISN
        :  : :       ::::::::::::::::::::::::::::::::::::::: ..:.::
CCDS50 EGVLDFSDPFSTEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSN
        50        60        70        80        90       100       

        110       120       130       140       150       160      
pF1KE3 SSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYK
       ::::::::::::::.::::::::::::::::::::.:::.::::::::.:::.::..:::
CCDS50 SSFVNFQIWDFPGQIDFFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYK
       110       120       130       140       150       160       

        170       180       190       200       210       220      
pF1KE3 VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIF
       :: :.:::::::::::::::::::::::::::::::::::::::.:::::::::::::::
CCDS50 VNTDINFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIF
       170       180       190       200       210       220       

        230       240       250       260       270       280      
pF1KE3 EAFSKVVQKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCC
       ::::::::::::::::::::::::::::::::::::::::::::::::.:::::.:::::
CCDS50 EAFSKVVQKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCC
       230       240       250       260       270       280       

        290       300       310       320       330       340      
pF1KE3 DMIDVVIDVSCIYGLKEDGSGSAYDKESMAIIKLNNTTVLYLKEVTKFLALVCILREESF
       ::::::::.::::::::::.:. ::::: ::::::::::::::::::::::::..:::::
CCDS50 DMIDVVIDISCIYGLKEDGAGTPYDKESTAIIKLNNTTVLYLKEVTKFLALVCFVREESF
       290       300       310       320       330       340       

        350       360       370       380       390         
pF1KE3 ERKGLIDYNFHCFRKAIHEVFEVGVTSHRSCGHQTSASSLKALTHNGTPRNAI
       ::::::::::::::::::::::: .   .:   :.  .. :  : :::::   
CCDS50 ERKGLIDYNFHCFRKAIHEVFEVRMKVVKSRKVQNRLQKKKRATPNGTPRVLL
       350       360       370       380       390       400




399 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:56:25 2016 done: Sun Nov  6 08:56:25 2016
 Total Scan time:  2.860 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]