Result of FASTA (ccds) for
pFN21AE3920
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3920, 272 aa
1>>>pF1KE3920 272 - 272 aa - 272 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8932+/-0.000754; mu= 12.2570+/- 0.046
mean_var=72.3764+/-14.305, 0's: 0 Z-trim(108.9): 43 B-trim: 0 in 0/50
Lambda= 0.150756
statistics sampled from 10493 (10536) to 10493 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.324), width: 16
Scan time: 2.260
The best scores are: opt bits E(32554)
CCDS9424.1 KCNRG gene_id:283518|Hs108|chr13 ( 272) 1790 398.1 3.5e-111
CCDS41889.1 KCNRG gene_id:283518|Hs108|chr13 ( 229) 1297 290.8 5.7e-79
CCDS2891.1 KCTD6 gene_id:200845|Hs108|chr3 ( 237) 291 72.1 4.3e-13
CCDS34260.1 KCTD16 gene_id:57528|Hs108|chr5 ( 428) 274 68.5 9.4e-12
CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11 ( 260) 267 66.8 1.7e-11
CCDS9455.1 KCTD12 gene_id:115207|Hs108|chr13 ( 325) 260 65.4 6.1e-11
>>CCDS9424.1 KCNRG gene_id:283518|Hs108|chr13 (272 aa)
initn: 1790 init1: 1790 opt: 1790 Z-score: 2109.6 bits: 398.1 E(32554): 3.5e-111
Smith-Waterman score: 1790; 100.0% identity (100.0% similar) in 272 aa overlap (1-272:1-272)
10 20 30 40 50 60
pF1KE3 MSSQELVTLNVGGKIFTTRFSTIKQFPASRLARMLDGRDQEFKMVGGQIFVDRDGDLFSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 MSSQELVTLNVGGKIFTTRFSTIKQFPASRLARMLDGRDQEFKMVGGQIFVDRDGDLFSF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ILDFLRTHQLLLPTEFSDYLRLQREALFYELRSLVDLLNPYLLQPRPALVEVHFLSRNTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 ILDFLRTHQLLLPTEFSDYLRLQREALFYELRSLVDLLNPYLLQPRPALVEVHFLSRNTQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 AFFRVFGSCSKTIEMLTGRITVFTEQPSAPTWNGNFFPPQMTLLPLPPQRPSYHDLVFQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 AFFRVFGSCSKTIEMLTGRITVFTEQPSAPTWNGNFFPPQMTLLPLPPQRPSYHDLVFQC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 GSDSTTDNQTGVRYVSIKPDNRKLANGTNVLGLLIDTLLKEGFHLVSTRTVSSEDKTECY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 GSDSTTDNQTGVRYVSIKPDNRKLANGTNVLGLLIDTLLKEGFHLVSTRTVSSEDKTECY
190 200 210 220 230 240
250 260 270
pF1KE3 SFERIKSPEVLITNETPKPETIIIPEQSQIKK
::::::::::::::::::::::::::::::::
CCDS94 SFERIKSPEVLITNETPKPETIIIPEQSQIKK
250 260 270
>>CCDS41889.1 KCNRG gene_id:283518|Hs108|chr13 (229 aa)
initn: 1343 init1: 1297 opt: 1297 Z-score: 1531.3 bits: 290.8 E(32554): 5.7e-79
Smith-Waterman score: 1297; 99.5% identity (99.5% similar) in 195 aa overlap (1-195:1-195)
10 20 30 40 50 60
pF1KE3 MSSQELVTLNVGGKIFTTRFSTIKQFPASRLARMLDGRDQEFKMVGGQIFVDRDGDLFSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MSSQELVTLNVGGKIFTTRFSTIKQFPASRLARMLDGRDQEFKMVGGQIFVDRDGDLFSF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ILDFLRTHQLLLPTEFSDYLRLQREALFYELRSLVDLLNPYLLQPRPALVEVHFLSRNTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ILDFLRTHQLLLPTEFSDYLRLQREALFYELRSLVDLLNPYLLQPRPALVEVHFLSRNTQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 AFFRVFGSCSKTIEMLTGRITVFTEQPSAPTWNGNFFPPQMTLLPLPPQRPSYHDLVFQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AFFRVFGSCSKTIEMLTGRITVFTEQPSAPTWNGNFFPPQMTLLPLPPQRPSYHDLVFQC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 GSDSTTDNQTGVRYVSIKPDNRKLANGTNVLGLLIDTLLKEGFHLVSTRTVSSEDKTECY
::::::::::::: :
CCDS41 GSDSTTDNQTGVRLVCNGVISAHHNLRLWGSSDSPASASRVAGITGMFL
190 200 210 220
>>CCDS2891.1 KCTD6 gene_id:200845|Hs108|chr3 (237 aa)
initn: 294 init1: 266 opt: 291 Z-score: 348.6 bits: 72.1 E(32554): 4.3e-13
Smith-Waterman score: 291; 35.5% identity (64.5% similar) in 152 aa overlap (7-157:14-160)
10 20 30 40 50
pF1KE3 MSSQELVTLNVGGKIFTTRFSTIKQFPASRLARMLDGRDQEFKMVGGQIFVDR
:::::::...:: ..:. ..: : :. :. : . :. :.::
CCDS28 MDNGDWGYMMTDPVTLNVGGHLYTTSLTTLTRYPDSMLGAMFGGDFPTARDPQGNYFIDR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 DGDLFSFILDFLRTHQLLLPTEFSDYLRLQREALFYELRSLVDLLN-PYLLQPRPALVEV
:: :: ..:.:::: .: :: .:... :..:: ::... :.. :: : : : .. ::
CCDS28 DGPLFRYVLNFLRTSELTLPLDFKEFDLLRKEADFYQIEPLIQCLNDPKPLYPMDTFEEV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 HFLSRNTQAFFRVFGSCSKTIEMLTGRITVFTEQPSAPTWNGNFFPPQMTLLPLPPQRPS
:: . : ... :. . .. ..:. :. : .:.:
CCDS28 VELSST-----RKLSKYSNPVAVIITQLTITTKVHSLLEGISNYFTKWNKHMMDTRDCQV
130 140 150 160 170
180 190 200 210 220 230
pF1KE3 YHDLVFQCGSDSTTDNQTGVRYVSIKPDNRKLANGTNVLGLLIDTLLKEGFHLVSTRTVS
CCDS28 SFTFGPCDYHQEVSLRVHLMEYITKQGFTIRNTRVHHMSERANENTVEHNWTFCRLARKT
180 190 200 210 220 230
>>CCDS34260.1 KCTD16 gene_id:57528|Hs108|chr5 (428 aa)
initn: 263 init1: 171 opt: 274 Z-score: 324.5 bits: 68.5 E(32554): 9.4e-12
Smith-Waterman score: 274; 42.7% identity (69.1% similar) in 110 aa overlap (2-107:22-131)
10 20 30
pF1KE3 MSSQELVTLNVGGKIFTTRFSTIKQFPASRLARML----D
: :.: :::::... :: ::. ..: : : .:. :
CCDS34 MALSGNCSRYYPREQGSAVPNSFPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPKRD
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE3 GRDQEFKMVGGQIFVDRDGDLFSFILDFLRTHQLLLPTEFSDYLRLQREALFYELRSLVD
.. : :..:.:::: :: .:::.:: .:..:: .: . ::.::: ...: .::
CCDS34 TANDLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVK
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE3 LLNPYLLQPRPALVEVHFLSRNTQAFFRVFGSCSKTIEMLTGRITVFTEQPSAPTWNGNF
::.: .. :
CCDS34 LLTPDEIKQSPDEFCHSDFEDASQGSDTRICPPSSLLPADRKWGFITVGYRGSCTLGREG
130 140 150 160 170 180
>>CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11 (260 aa)
initn: 287 init1: 263 opt: 267 Z-score: 319.7 bits: 66.8 E(32554): 1.7e-11
Smith-Waterman score: 267; 44.6% identity (75.0% similar) in 92 aa overlap (7-98:5-96)
10 20 30 40 50 60
pF1KE3 MSSQELVTLNVGGKIFTTRFSTIKQFPASRLARMLDGRDQEFKMVGGQIFVDRDGDLFSF
.:::::::..:: ..:. .:: : :. :..:. . :. :.:::: .: .
CCDS31 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFSGKMPTKRDSQGNCFIDRDGKVFRY
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 ILDFLRTHQLLLPTEFSDYLRLQREALFYELRSLVDLLNPYLLQPRPALVEVHFLSRNTQ
::.:::: .: :: .:... :.::: ::... :.. :
CCDS31 ILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIEALQEKEVELSKAEKNAMLNITLNQ
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 AFFRVFGSCSKTIEMLTGRITVFTEQPSAPTWNGNFFPPQMTLLPLPPQRPSYHDLVFQC
CCDS31 RVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTSCLFLKLLGSKLFYCSNGNLSSITSHL
120 130 140 150 160 170
>>CCDS9455.1 KCTD12 gene_id:115207|Hs108|chr13 (325 aa)
initn: 292 init1: 179 opt: 260 Z-score: 309.9 bits: 65.4 E(32554): 6.1e-11
Smith-Waterman score: 260; 46.2% identity (67.9% similar) in 106 aa overlap (5-107:34-137)
10 20 30
pF1KE3 MSSQELVTLNVGGKIFTTRFSTIKQFPASRLARM
..: :::::....:: :. . : : : ::
CCDS94 ADSTRGLPNGGGGGGGSGSSSSSAEPPLFPDIVELNVGGQVYVTRRCTVVSVPDSLLWRM
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE3 LDGRD-QEF-KMVGGQIFVDRDGDLFSFILDFLRTHQLLLPTEFSDYLRLQREALFYELR
. .. ::. . :..:.:::: :: .:::.:: ::.:: : . :::::: ..::
CCDS94 FTQQQPQELARDSKGRFFLDRDGFLFRYILDYLRDLQLVLPDYFPERSRLQREAEYFELP
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE3 SLVDLLN-PYLLQPRPALVEVHFLSRNTQAFFRVFGSCSKTIEMLTGRITVFTEQPSAPT
:: :. : :: :
CCDS94 ELVRRLGAPQ--QPGPGPPPSRRGVHKEGSLGDELLPLGYSEPEQQEGASAGAPSPTLEL
130 140 150 160 170 180
272 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 08:56:59 2016 done: Sun Nov 6 08:56:59 2016
Total Scan time: 2.260 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]