Result of FASTA (ccds) for
pFN21AE3906
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3906, 459 aa
1>>>pF1KE3906 459 - 459 aa - 459 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1805+/-0.00118; mu= 8.4456+/- 0.070
mean_var=132.5705+/-29.957, 0's: 0 Z-trim(105.0): 216 B-trim: 0 in 0/48
Lambda= 0.111391
statistics sampled from 7922 (8172) to 7922 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.603), E-opt: 0.2 (0.251), width: 16
Scan time: 2.770
The best scores are: opt bits E(32554)
CCDS46455.1 CHN1 gene_id:1123|Hs108|chr2 ( 459) 3090 508.7 5.2e-144
CCDS5420.1 CHN2 gene_id:1124|Hs108|chr7 ( 468) 2319 384.8 1e-106
CCDS56147.1 CHN1 gene_id:1123|Hs108|chr2 ( 334) 1861 311.1 1.1e-84
CCDS46454.1 CHN1 gene_id:1123|Hs108|chr2 ( 433) 1700 285.3 8.7e-77
CCDS47566.1 CHN2 gene_id:1124|Hs108|chr7 ( 332) 1499 252.9 3.7e-67
CCDS78219.1 CHN2 gene_id:1124|Hs108|chr7 ( 274) 847 148.0 1.1e-35
CCDS78217.1 CHN2 gene_id:1124|Hs108|chr7 ( 197) 820 143.6 1.7e-34
CCDS78218.1 CHN2 gene_id:1124|Hs108|chr7 ( 260) 677 120.7 1.8e-27
CCDS10239.1 MYO9A gene_id:4649|Hs108|chr15 (2548) 480 89.7 3.7e-17
CCDS11498.1 ARHGAP27 gene_id:201176|Hs108|chr17 ( 548) 465 86.9 5.8e-17
CCDS74082.1 ARHGAP27 gene_id:201176|Hs108|chr17 ( 889) 465 87.0 8.6e-17
CCDS7144.2 ARHGAP21 gene_id:57584|Hs108|chr10 (1958) 453 85.3 6.1e-16
CCDS2184.1 ARHGAP15 gene_id:55843|Hs108|chr2 ( 475) 442 83.1 6.7e-16
CCDS8795.1 RACGAP1 gene_id:29127|Hs108|chr12 ( 632) 444 83.5 6.8e-16
CCDS34075.1 ARHGAP10 gene_id:79658|Hs108|chr4 ( 786) 445 83.8 7.2e-16
CCDS54254.1 ARHGAP33 gene_id:115703|Hs108|chr19 (1123) 446 84.0 8.6e-16
CCDS12477.1 ARHGAP33 gene_id:115703|Hs108|chr19 (1126) 446 84.0 8.6e-16
CCDS32062.1 ARHGAP5 gene_id:394|Hs108|chr14 (1502) 444 83.8 1.4e-15
CCDS45095.1 ARHGAP5 gene_id:394|Hs108|chr14 (1501) 440 83.1 2.1e-15
CCDS56027.1 ARHGAP23 gene_id:57636|Hs108|chr17 (1491) 439 83.0 2.4e-15
CCDS46010.1 MYO9B gene_id:4650|Hs108|chr19 (2022) 441 83.4 2.4e-15
CCDS46127.1 ARHGAP35 gene_id:2909|Hs108|chr19 (1499) 438 82.8 2.6e-15
CCDS78220.1 CHN2 gene_id:1124|Hs108|chr7 ( 228) 422 79.7 3.5e-15
CCDS13807.1 BCR gene_id:613|Hs108|chr22 (1227) 432 81.8 4.4e-15
CCDS58497.1 ABR gene_id:29|Hs108|chr17 ( 310) 421 79.6 5e-15
CCDS13806.1 BCR gene_id:613|Hs108|chr22 (1271) 428 81.2 7e-15
CCDS73936.1 ABR gene_id:29|Hs108|chr17 ( 641) 421 79.8 8.9e-15
CCDS54060.1 ABR gene_id:29|Hs108|chr17 ( 813) 421 79.9 1.1e-14
CCDS11000.1 ABR gene_id:29|Hs108|chr17 ( 822) 421 79.9 1.1e-14
CCDS10999.1 ABR gene_id:29|Hs108|chr17 ( 859) 421 79.9 1.1e-14
CCDS59214.1 ARHGAP12 gene_id:94134|Hs108|chr10 ( 794) 420 79.7 1.2e-14
CCDS73082.1 ARHGAP12 gene_id:94134|Hs108|chr10 ( 799) 420 79.7 1.2e-14
CCDS59215.1 ARHGAP12 gene_id:94134|Hs108|chr10 ( 816) 420 79.7 1.2e-14
CCDS59216.1 ARHGAP12 gene_id:94134|Hs108|chr10 ( 841) 420 79.8 1.2e-14
CCDS7170.1 ARHGAP12 gene_id:94134|Hs108|chr10 ( 846) 420 79.8 1.2e-14
CCDS47297.1 ARHGAP26 gene_id:23092|Hs108|chr5 ( 759) 412 78.4 2.8e-14
CCDS4277.1 ARHGAP26 gene_id:23092|Hs108|chr5 ( 814) 412 78.5 2.9e-14
CCDS43135.1 ARHGAP31 gene_id:57514|Hs108|chr3 (1444) 415 79.1 3.3e-14
CCDS31718.1 ARHGAP32 gene_id:9743|Hs108|chr11 (1738) 404 77.4 1.3e-13
CCDS44769.1 ARHGAP32 gene_id:9743|Hs108|chr11 (2087) 404 77.4 1.5e-13
CCDS1215.1 ARHGAP30 gene_id:257106|Hs108|chr1 ( 890) 394 75.6 2.3e-13
CCDS30918.1 ARHGAP30 gene_id:257106|Hs108|chr1 (1101) 394 75.7 2.8e-13
CCDS2572.1 SRGAP3 gene_id:9901|Hs108|chr3 (1099) 390 75.0 4.3e-13
CCDS14388.1 OPHN1 gene_id:4983|Hs108|chrX ( 802) 386 74.3 5.2e-13
CCDS8967.1 SRGAP1 gene_id:57522|Hs108|chr12 (1085) 368 71.5 5e-12
CCDS14736.1 ARHGAP4 gene_id:393|Hs108|chrX ( 946) 363 70.6 7.8e-12
CCDS55540.1 ARHGAP4 gene_id:393|Hs108|chrX ( 986) 363 70.6 8e-12
CCDS13952.2 SH3BP1 gene_id:23616|Hs108|chr22 ( 701) 360 70.1 8.5e-12
CCDS33689.1 SRGAP3 gene_id:9901|Hs108|chr3 (1075) 359 70.0 1.3e-11
CCDS43246.1 ARHGAP24 gene_id:83478|Hs108|chr4 ( 653) 349 68.3 2.7e-11
>>CCDS46455.1 CHN1 gene_id:1123|Hs108|chr2 (459 aa)
initn: 3090 init1: 3090 opt: 3090 Z-score: 2698.9 bits: 508.7 E(32554): 5.2e-144
Smith-Waterman score: 3090; 100.0% identity (100.0% similar) in 459 aa overlap (1-459:1-459)
10 20 30 40 50 60
pF1KE3 MALTLFDTDEYRPPVWKSYLYQLQQEAPHPRRITCTCEVENRPKYYGREFHGMISREAAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MALTLFDTDEYRPPVWKSYLYQLQQEAPHPRRITCTCEVENRPKYYGREFHGMISREAAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 QLLIVAEGSYLIRESQRQPGTYTLALRFGSQTRNFRLYYDGKHFVGEKRFESIHDLVTDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QLLIVAEGSYLIRESQRQPGTYTLALRFGSQTRNFRLYYDGKHFVGEKRFESIHDLVTDG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LITLYIETKAAEYIAKMTINPIYEHVGYTTLNREPAYKKHMPVLKETHDERDSTGQDGVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LITLYIETKAAEYIAKMTINPIYEHVGYTTLNREPAYKKHMPVLKETHDERDSTGQDGVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 EKRLTSLVRRATLKENEQIPKYEKIHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EKRLTSLVRRATLKENEQIPKYEKIHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 LNVHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LNVHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 GLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 PKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGI
370 380 390 400 410 420
430 440 450
pF1KE3 VFGPTLMRSPELDAMAALNDIRYQRLVVELLIKNEDILF
:::::::::::::::::::::::::::::::::::::::
CCDS46 VFGPTLMRSPELDAMAALNDIRYQRLVVELLIKNEDILF
430 440 450
>>CCDS5420.1 CHN2 gene_id:1124|Hs108|chr7 (468 aa)
initn: 2320 init1: 1505 opt: 2319 Z-score: 2029.2 bits: 384.8 E(32554): 1e-106
Smith-Waterman score: 2319; 73.5% identity (91.2% similar) in 453 aa overlap (7-459:17-468)
10 20 30 40 50
pF1KE3 MALTLFDTDEYRPPVWKSYLYQLQQEAPHPRRITCTCEVENRPKYYGREF
:..::.::.:::::::::::::.:.:: : :::::::::::::
CCDS54 MAASSNSSLSGSSVSSDAEEYQPPIWKSYLYQLQQEAPRPKRIICPREVENRPKYYGREF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 HGMISREAADQLLIVAEGSYLIRESQRQPGTYTLALRFGSQTRNFRLYYDGKHFVGEKRF
::.:::: ::.:: .::.:..:::::::: ::::::::.:: :.::..:::::::::::
CCDS54 HGIISREQADELLGGVEGAYILRESQRQPGCYTLALRFGNQTLNYRLFHDGKHFVGEKRF
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 ESIHDLVTDGLITLYIETKAAEYIAKMTINPIYEHVGYTTLNREPAYKKHMPVLKETHDE
::::::::::::::::::::::::.::: ::::::.::.:: :: . .. . :. .
CCDS54 ESIHDLVTDGLITLYIETKAAEYISKMTTNPIYEHIGYATLLREKVSRR-LSRSKNEPRK
130 140 150 160 170
180 190 200 210 220 230
pF1KE3 RDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVHTFRGPHWCEYCANFMWGLI
. : .. .. ....::::::.: .:.. .::: :::::::::::::::::::::::::
CCDS54 TNVTHEEHTAVEKISSLVRRAALTHNDNHFNYEKTHNFKVHTFRGPHWCEYCANFMWGLI
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE3 AQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHTTKRPMVVDMCIR
::::.:.:::::::::::: :::::.::::..:::: ::::::::::.:.::::::.:::
CCDS54 AQGVRCSDCGLNVHKQCSKHVPNDCQPDLKRIKKVYCCDLTTLVKAHNTQRPMVVDICIR
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE3 EIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDL
:::.:::.::::::::::.. ::::::::::::::::::.:.: ::::::::::::::::
CCDS54 EIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINIITGALKLYFRDL
300 310 320 330 340 350
360 370 380 390 400 410
pF1KE3 PIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKE
:::.::::.: :::..::: . ::.::..::.: :::::: ::::::: :::.::..::.
CCDS54 PIPVITYDTYSKFIDAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKD
360 370 380 390 400 410
420 430 440 450
pF1KE3 NLMNAENLGIVFGPTLMRSPELDAMAALNDIRYQRLVVELLIKNEDILF
:.:::::::::::::::: :: .....:.:.:::.:.:..::.:::.::
CCDS54 NFMNAENLGIVFGPTLMRPPEDSTLTTLHDMRYQKLIVQILIENEDVLF
420 430 440 450 460
>>CCDS56147.1 CHN1 gene_id:1123|Hs108|chr2 (334 aa)
initn: 1861 init1: 1861 opt: 1861 Z-score: 1633.5 bits: 311.1 E(32554): 1.1e-84
Smith-Waterman score: 1861; 99.6% identity (100.0% similar) in 277 aa overlap (183-459:58-334)
160 170 180 190 200 210
pF1KE3 REPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVHT
.:::::::::::::::::::::::::::::
CCDS56 DLLIAALGMKLGSPKSSVTIWQPLKLFAYSQLTSLVRRATLKENEQIPKYEKIHNFKVHT
30 40 50 60 70 80
220 230 240 250 260 270
pF1KE3 FRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKKVYSCDLTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 FRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKKVYSCDLTT
90 100 110 120 130 140
280 290 300 310 320 330
pF1KE3 LVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNM
150 160 170 180 190 200
340 350 360 370 380 390
pF1KE3 YEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 YEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCE
210 220 230 240 250 260
400 410 420 430 440 450
pF1KE3 TLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRYQRLVVELLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRYQRLVVELLI
270 280 290 300 310 320
pF1KE3 KNEDILF
:::::::
CCDS56 KNEDILF
330
>>CCDS46454.1 CHN1 gene_id:1123|Hs108|chr2 (433 aa)
initn: 1700 init1: 1700 opt: 1700 Z-score: 1492.1 bits: 285.3 E(32554): 8.7e-77
Smith-Waterman score: 2865; 94.3% identity (94.3% similar) in 459 aa overlap (1-459:1-433)
10 20 30 40 50 60
pF1KE3 MALTLFDTDEYRPPVWKSYLYQLQQEAPHPRRITCTCEVENRPKYYGREFHGMISREAAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MALTLFDTDEYRPPVWKSYLYQLQQEAPHPRRITCTCEVENRPKYYGREFHGMISREAAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 QLLIVAEGSYLIRESQRQPGTYTLALRFGSQTRNFRLYYDGKHFVGEKRFESIHDLVTDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QLLIVAEGSYLIRESQRQPGTYTLALRFGSQTRNFRLYYDGKHFVGEKRFESIHDLVTDG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LITLYIETKAAEYIAKMTINPIYEHVGYTTLNREPAYKKHMPVLKETHDERDSTGQDGVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LITLYIETKAAEYIAKMTINPIYEHVGYTTLNREPAYKKHMPVLKETHDERDSTGQDGVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 EKRLTSLVRRATLKENEQIPKYEKIHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCG
::: :::::::::::::::::::::::::::::::
CCDS46 EKR--------------------------VHTFRGPHWCEYCANFMWGLIAQGVKCADCG
190 200 210
250 260 270 280 290 300
pF1KE3 LNVHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LNVHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSE
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE3 GLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAY
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE3 PKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGI
340 350 360 370 380 390
430 440 450
pF1KE3 VFGPTLMRSPELDAMAALNDIRYQRLVVELLIKNEDILF
:::::::::::::::::::::::::::::::::::::::
CCDS46 VFGPTLMRSPELDAMAALNDIRYQRLVVELLIKNEDILF
400 410 420 430
>>CCDS47566.1 CHN2 gene_id:1124|Hs108|chr7 (332 aa)
initn: 1499 init1: 1499 opt: 1499 Z-score: 1319.1 bits: 252.9 E(32554): 3.7e-67
Smith-Waterman score: 1499; 76.5% identity (94.2% similar) in 277 aa overlap (183-459:56-332)
160 170 180 190 200 210
pF1KE3 REPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVHT
...::::::.: .:.. .::: :::::::
CCDS47 RQELLAVAFGVKVGVKGGFLWPPLKLFACSQISSLVRRAALTHNDNHFNYEKTHNFKVHT
30 40 50 60 70 80
220 230 240 250 260 270
pF1KE3 FRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKKVYSCDLTT
::::::::::::::::::::::.:.:::::::::::: :::::.::::..:::: :::::
CCDS47 FRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHVPNDCQPDLKRIKKVYCCDLTT
90 100 110 120 130 140
280 290 300 310 320 330
pF1KE3 LVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNM
:::::.:.::::::.::::::.:::.::::::::::.. ::::::::::::::::::.:.
CCDS47 LVKAHNTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANV
150 160 170 180 190 200
340 350 360 370 380 390
pF1KE3 YEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCE
: :::::::::::::::::::.::::.: :::..::: . ::.::..::.: :::::: :
CCDS47 YPDINIITGALKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEVLMLLPPAHYE
210 220 230 240 250 260
400 410 420 430 440 450
pF1KE3 TLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRYQRLVVELLI
:::::: :::.::..::.:.:::::::::::::::: :: .....:.:.:::.:.:..::
CCDS47 TLRYLMIHLKKVTMNEKDNFMNAENLGIVFGPTLMRPPEDSTLTTLHDMRYQKLIVQILI
270 280 290 300 310 320
pF1KE3 KNEDILF
.:::.::
CCDS47 ENEDVLF
330
>>CCDS78219.1 CHN2 gene_id:1124|Hs108|chr7 (274 aa)
initn: 825 init1: 825 opt: 847 Z-score: 754.1 bits: 148.0 E(32554): 1.1e-35
Smith-Waterman score: 1011; 58.8% identity (74.0% similar) in 277 aa overlap (183-459:56-274)
160 170 180 190 200 210
pF1KE3 REPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVHT
...::::::.: .:.. .::: :::::::
CCDS78 RQELLAVAFGVKVGVKGGFLWPPLKLFACSQISSLVRRAALTHNDNHFNYEKTHNFKVHT
30 40 50 60 70 80
220 230 240 250 260 270
pF1KE3 FRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKKVYSCDLTT
::::::::::::::::::::::.:.
CCDS78 FRGPHWCEYCANFMWGLIAQGVRCS-----------------------------------
90 100 110
280 290 300 310 320 330
pF1KE3 LVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNM
::.::::::::::.. ::::::::::::::::::.:.
CCDS78 -----------------------GLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANV
120 130 140
340 350 360 370 380 390
pF1KE3 YEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCE
: :::::::::::::::::::.::::.: :::..::: . ::.::..::.: :::::: :
CCDS78 YPDINIITGALKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEVLMLLPPAHYE
150 160 170 180 190 200
400 410 420 430 440 450
pF1KE3 TLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRYQRLVVELLI
:::::: :::.::..::.:.:::::::::::::::: :: .....:.:.:::.:.:..::
CCDS78 TLRYLMIHLKKVTMNEKDNFMNAENLGIVFGPTLMRPPEDSTLTTLHDMRYQKLIVQILI
210 220 230 240 250 260
pF1KE3 KNEDILF
.:::.::
CCDS78 ENEDVLF
270
>>CCDS78217.1 CHN2 gene_id:1124|Hs108|chr7 (197 aa)
initn: 820 init1: 820 opt: 820 Z-score: 732.7 bits: 143.6 E(32554): 1.7e-34
Smith-Waterman score: 820; 80.6% identity (95.0% similar) in 139 aa overlap (183-321:56-194)
160 170 180 190 200 210
pF1KE3 REPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVHT
...::::::.: .:.. .::: :::::::
CCDS78 RQELLAVAFGVKVGVKGGFLWPPLKLFACSQISSLVRRAALTHNDNHFNYEKTHNFKVHT
30 40 50 60 70 80
220 230 240 250 260 270
pF1KE3 FRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKKVYSCDLTT
::::::::::::::::::::::.:.:::::::::::: :::::.::::..:::: :::::
CCDS78 FRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHVPNDCQPDLKRIKKVYCCDLTT
90 100 110 120 130 140
280 290 300 310 320 330
pF1KE3 LVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNM
:::::.:.::::::.::::::.:::.::::::::::.. ::::::::::
CCDS78 LVKAHNTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRGLL
150 160 170 180 190
340 350 360 370 380 390
pF1KE3 YEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCE
>>CCDS78218.1 CHN2 gene_id:1124|Hs108|chr7 (260 aa)
initn: 672 init1: 672 opt: 677 Z-score: 606.7 bits: 120.7 E(32554): 1.8e-27
Smith-Waterman score: 944; 54.5% identity (69.3% similar) in 277 aa overlap (183-459:56-260)
160 170 180 190 200 210
pF1KE3 REPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVHT
...::::::.: .:.. .::: :::::::
CCDS78 RQELLAVAFGVKVGVKGGFLWPPLKLFACSQISSLVRRAALTHNDNHFNYEKTHNFKVHT
30 40 50 60 70 80
220 230 240 250 260 270
pF1KE3 FRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKKVYSCDLTT
::::::::::::::::::::::.:.:::::::::::: :::::.::::..:::: :::::
CCDS78 FRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHVPNDCQPDLKRIKKVYCCDLTT
90 100 110 120 130 140
280 290 300 310 320 330
pF1KE3 LVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNM
:::::.:.::::::.::::::.:
CCDS78 LVKAHNTQRPMVVDICIREIEAR-------------------------------------
150 160
340 350 360 370 380 390
pF1KE3 YEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCE
.: . ::.::..::.: :::::: :
CCDS78 -----------------------------------EISNADERLEAVHEVLMLLPPAHYE
170 180 190
400 410 420 430 440 450
pF1KE3 TLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRYQRLVVELLI
:::::: :::.::..::.:.:::::::::::::::: :: .....:.:.:::.:.:..::
CCDS78 TLRYLMIHLKKVTMNEKDNFMNAENLGIVFGPTLMRPPEDSTLTTLHDMRYQKLIVQILI
200 210 220 230 240 250
pF1KE3 KNEDILF
.:::.::
CCDS78 ENEDVLF
260
>>CCDS10239.1 MYO9A gene_id:4649|Hs108|chr15 (2548 aa)
initn: 371 init1: 226 opt: 480 Z-score: 421.4 bits: 89.7 E(32554): 3.7e-17
Smith-Waterman score: 480; 30.6% identity (64.9% similar) in 268 aa overlap (189-452:1983-2244)
160 170 180 190 200 210
pF1KE3 KHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVHTFRGPHW
:. :.. .. . .. : ::. . : .
CCDS10 WVNTFKVFLDEYMNEFKTSDCTATKVPKTERKKRRKKETDLVEEHNGHIFKATQYSIPTY
1960 1970 1980 1990 2000 2010
220 230 240 250 260 270
pF1KE3 CEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDC--KPDLKHVKKVYSCDLTTLVKA
::::....: .. .. : : ::.: . : : : . .. .. .:. :..
CCDS10 CEYCSSLIW-IMDRASVCKLCKYACHKKCCLKTTAKCSKKYDPELSSRQFGVELSRLTSE
2020 2030 2040 2050 2060 2070
280 290 300 310 320 330
pF1KE3 HTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYE-D
: :.::. : :: .:: .::.:: :: .. :.......: :.: :::. . .
CCDS10 DRTV-PLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDAE----SVNLDDYN
2080 2090 2100 2110 2120
340 350 360 370 380 390
pF1KE3 INIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLR
:..:....: ..:::: ::.:.. : .:... ... : .. .. .. : .: .::.
CCDS10 IHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQERKETIRGVYSVIDQLSRTHLNTLE
2130 2140 2150 2160 2170 2180
400 410 420 430 440 450
pF1KE3 YLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPEL-DAMAALNDIRYQRLVVELLIKN
:. :: :..:.: : :.:. :.:::.: ..: :. : . ...:: :::..
CCDS10 RLIFHLVRIALQEDTNRMSANALAIVFAPCILRCPDTTDPLQSVQDISKTTTCVELIVVE
2190 2200 2210 2220 2230 2240
pF1KE3 EDILF
CCDS10 QMNKYKARLKDISSLEFAENKAKTRLSLIRRSMGKGRIRRGNYPGPSSPVVVRLPSVSDV
2250 2260 2270 2280 2290 2300
>>CCDS11498.1 ARHGAP27 gene_id:201176|Hs108|chr17 (548 aa)
initn: 440 init1: 280 opt: 465 Z-score: 418.0 bits: 86.9 E(32554): 5.8e-17
Smith-Waterman score: 465; 37.2% identity (73.0% similar) in 196 aa overlap (264-458:352-545)
240 250 260 270 280 290
pF1KE3 VKCADCGLNVHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHTTKRPMVVDMCIREIE
.:..: :..: . . .. : :..::: .:
CCDS11 DLSKVRHKLRKFLQRRPTLQSLREKGYIKDQVFGCALAALCERERSRVPRFVQQCIRAVE
330 340 350 360 370 380
300 310 320 330 340 350
pF1KE3 SRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIP
.:::. .::::.:: :. ... :.: :. :.. . .::...:::::::.::.:: :
CCDS11 ARGLDIDGLYRISGNLATIQKLRYKVDHD-ERLDLDDGRWEDVHVITGALKLFFRELPEP
390 400 410 420 430 440
360 370 380 390 400 410
pF1KE3 LITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLM
:. .. . .:: . :..: .. . ... .. :: . .:::.:. :: :: : ..: :
CCDS11 LFPFSHFRQFIAAIKLQDQARRSRCVRDLVRSLPAPNHDTLRMLFQHLCRVIEHGEQNRM
450 460 470 480 490 500
420 430 440 450
pF1KE3 NAENLGIVFGPTLMRSPELDAMAALNDIRYQRLVVELLIKN-EDILF
......:::::::.: ::.. . . .: ::::.... ::.
CCDS11 SVQSVAIVFGPTLLR-PEVEETSMPMTMVFQNQVVELILQQCADIFPPH
510 520 530 540
459 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 09:04:51 2016 done: Sun Nov 6 09:04:51 2016
Total Scan time: 2.770 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]