Result of FASTA (omim) for
pFN21AE3903
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3903, 465 aa
1>>>pF1KE3903 465 - 465 aa - 465 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.4077+/-0.000381; mu= -4.0221+/- 0.024
mean_var=359.6892+/-75.238, 0's: 0 Z-trim(123.9): 131 B-trim: 2176 in 1/57
Lambda= 0.067626
statistics sampled from 44522 (44691) to 44522 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.524), width: 16
Scan time: 11.330
The best scores are: opt bits E(85289)
NP_919310 (OMIM: 612488) E3 ubiquitin-protein liga ( 465) 3360 341.5 3e-93
NP_073618 (OMIM: 612488) E3 ubiquitin-protein liga ( 515) 3331 338.7 2.3e-92
NP_919311 (OMIM: 612488) E3 ubiquitin-protein liga ( 432) 3129 318.9 1.7e-86
NP_919313 (OMIM: 612488) E3 ubiquitin-protein liga ( 432) 3129 318.9 1.7e-86
XP_005251423 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 3129 318.9 1.7e-86
XP_011516015 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 3129 318.9 1.7e-86
XP_006716784 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 3129 318.9 1.7e-86
XP_011516014 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 3129 318.9 1.7e-86
XP_005251424 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 3129 318.9 1.7e-86
XP_016869784 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 3129 318.9 1.7e-86
NP_919309 (OMIM: 612488) E3 ubiquitin-protein liga ( 432) 3129 318.9 1.7e-86
XP_005251425 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 3129 318.9 1.7e-86
XP_016869786 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 402) 2865 293.1 9.4e-79
XP_016869785 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 402) 2865 293.1 9.4e-79
XP_016869783 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 444) 2865 293.1 1e-78
>>NP_919310 (OMIM: 612488) E3 ubiquitin-protein ligase R (465 aa)
initn: 3360 init1: 3360 opt: 3360 Z-score: 1795.1 bits: 341.5 E(85289): 3e-93
Smith-Waterman score: 3360; 100.0% identity (100.0% similar) in 465 aa overlap (1-465:1-465)
10 20 30 40 50 60
pF1KE3 MACKSEDSPSPKRQRLSHSVFDYTSASPAPSPPMRPWEMTSNRQPPSVRPSQHHFSGERC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 MACKSEDSPSPKRQRLSHSVFDYTSASPAPSPPMRPWEMTSNRQPPSVRPSQHHFSGERC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 NTPARNRRSPPVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 NTPARNRRSPPVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LHPAAHPPQQNAVMVDIHDQLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 LHPAAHPPQQNAVMVDIHDQLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VVFSGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPHHPPHLPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 VVFSGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPHHPPHLPPP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 GQFVPFQTQQSRSPLQRIENEVELLGEHLPVGGFTYPPSAHPPTLPPSAPLQFLTHDPLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 GQFVPFQTQQSRSPLQRIENEVELLGEHLPVGGFTYPPSAHPPTLPPSAPLQFLTHDPLH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 QEVSFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFSFEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 QEVSFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFSFEL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 DVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 DVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDF
370 380 390 400 410 420
430 440 450 460
pF1KE3 ESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE
:::::::::::::::::::::::::::::::::::::::::::::
NP_919 ESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE
430 440 450 460
>>NP_073618 (OMIM: 612488) E3 ubiquitin-protein ligase R (515 aa)
initn: 3331 init1: 3331 opt: 3331 Z-score: 1779.2 bits: 338.7 E(85289): 2.3e-92
Smith-Waterman score: 3331; 99.8% identity (100.0% similar) in 462 aa overlap (4-465:54-515)
10 20 30
pF1KE3 MACKSEDSPSPKRQRLSHSVFDYTSASPAPSPP
.:::::::::::::::::::::::::::::
NP_073 ERVRLQSLFPLLPSDQNTTVQEDAHFKAFFQSEDSPSPKRQRLSHSVFDYTSASPAPSPP
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE3 MRPWEMTSNRQPPSVRPSQHHFSGERCNTPARNRRSPPVRRQRGRRDRLSRHNSISQDEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 MRPWEMTSNRQPPSVRPSQHHFSGERCNTPARNRRSPPVRRQRGRRDRLSRHNSISQDEN
90 100 110 120 130 140
100 110 120 130 140 150
pF1KE3 YHHLPYAQQQAIEEPRAFHPPNVSPRLLHPAAHPPQQNAVMVDIHDQLHQGTVPVSYTVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 YHHLPYAQQQAIEEPRAFHPPNVSPRLLHPAAHPPQQNAVMVDIHDQLHQGTVPVSYTVT
150 160 170 180 190 200
160 170 180 190 200 210
pF1KE3 TVAPHGIPLCTGQHIPACSTQQVPGCSVVFSGQHLPVCSVPPPMLQACSVQHLPVPYAAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 TVAPHGIPLCTGQHIPACSTQQVPGCSVVFSGQHLPVCSVPPPMLQACSVQHLPVPYAAF
210 220 230 240 250 260
220 230 240 250 260 270
pF1KE3 PPLISSDPFLIHPPHLSPHHPPHLPPPGQFVPFQTQQSRSPLQRIENEVELLGEHLPVGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 PPLISSDPFLIHPPHLSPHHPPHLPPPGQFVPFQTQQSRSPLQRIENEVELLGEHLPVGG
270 280 290 300 310 320
280 290 300 310 320 330
pF1KE3 FTYPPSAHPPTLPPSAPLQFLTHDPLHQEVSFGVPYPPFMPRRLTGRSRYRSQQPIPPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 FTYPPSAHPPTLPPSAPLQFLTHDPLHQEVSFGVPYPPFMPRRLTGRSRYRSQQPIPPPP
330 340 350 360 370 380
340 350 360 370 380 390
pF1KE3 YHPSLLPYVLSMLPVPPAVGPTFSFELDVEDGEVENYEALLNLAERLGEAKPRGLTKADI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 YHPSLLPYVLSMLPVPPAVGPTFSFELDVEDGEVENYEALLNLAERLGEAKPRGLTKADI
390 400 410 420 430 440
400 410 420 430 440 450
pF1KE3 EQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 EQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPIC
450 460 470 480 490 500
460
pF1KE3 RADASEVHRDSE
::::::::::::
NP_073 RADASEVHRDSE
510
>>NP_919311 (OMIM: 612488) E3 ubiquitin-protein ligase R (432 aa)
initn: 3129 init1: 3129 opt: 3129 Z-score: 1673.7 bits: 318.9 E(85289): 1.7e-86
Smith-Waterman score: 3129; 100.0% identity (100.0% similar) in 432 aa overlap (34-465:1-432)
10 20 30 40 50 60
pF1KE3 KSEDSPSPKRQRLSHSVFDYTSASPAPSPPMRPWEMTSNRQPPSVRPSQHHFSGERCNTP
::::::::::::::::::::::::::::::
NP_919 MRPWEMTSNRQPPSVRPSQHHFSGERCNTP
10 20 30
70 80 90 100 110 120
pF1KE3 ARNRRSPPVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRLLHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 ARNRRSPPVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRLLHP
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 AAHPPQQNAVMVDIHDQLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 AAHPPQQNAVMVDIHDQLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVVF
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE3 SGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPHHPPHLPPPGQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 SGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPHHPPHLPPPGQF
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE3 VPFQTQQSRSPLQRIENEVELLGEHLPVGGFTYPPSAHPPTLPPSAPLQFLTHDPLHQEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 VPFQTQQSRSPLQRIENEVELLGEHLPVGGFTYPPSAHPPTLPPSAPLQFLTHDPLHQEV
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE3 SFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFSFELDVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 SFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFSFELDVE
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE3 DGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 DGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESR
340 350 360 370 380 390
430 440 450 460
pF1KE3 QLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE
::::::::::::::::::::::::::::::::::::::::::
NP_919 QLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE
400 410 420 430
>>NP_919313 (OMIM: 612488) E3 ubiquitin-protein ligase R (432 aa)
initn: 3129 init1: 3129 opt: 3129 Z-score: 1673.7 bits: 318.9 E(85289): 1.7e-86
Smith-Waterman score: 3129; 100.0% identity (100.0% similar) in 432 aa overlap (34-465:1-432)
10 20 30 40 50 60
pF1KE3 KSEDSPSPKRQRLSHSVFDYTSASPAPSPPMRPWEMTSNRQPPSVRPSQHHFSGERCNTP
::::::::::::::::::::::::::::::
NP_919 MRPWEMTSNRQPPSVRPSQHHFSGERCNTP
10 20 30
70 80 90 100 110 120
pF1KE3 ARNRRSPPVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRLLHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 ARNRRSPPVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRLLHP
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 AAHPPQQNAVMVDIHDQLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 AAHPPQQNAVMVDIHDQLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVVF
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE3 SGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPHHPPHLPPPGQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 SGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPHHPPHLPPPGQF
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE3 VPFQTQQSRSPLQRIENEVELLGEHLPVGGFTYPPSAHPPTLPPSAPLQFLTHDPLHQEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 VPFQTQQSRSPLQRIENEVELLGEHLPVGGFTYPPSAHPPTLPPSAPLQFLTHDPLHQEV
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE3 SFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFSFELDVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 SFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFSFELDVE
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE3 DGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 DGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESR
340 350 360 370 380 390
430 440 450 460
pF1KE3 QLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE
::::::::::::::::::::::::::::::::::::::::::
NP_919 QLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE
400 410 420 430
>>XP_005251423 (OMIM: 612488) PREDICTED: E3 ubiquitin-pr (432 aa)
initn: 3129 init1: 3129 opt: 3129 Z-score: 1673.7 bits: 318.9 E(85289): 1.7e-86
Smith-Waterman score: 3129; 100.0% identity (100.0% similar) in 432 aa overlap (34-465:1-432)
10 20 30 40 50 60
pF1KE3 KSEDSPSPKRQRLSHSVFDYTSASPAPSPPMRPWEMTSNRQPPSVRPSQHHFSGERCNTP
::::::::::::::::::::::::::::::
XP_005 MRPWEMTSNRQPPSVRPSQHHFSGERCNTP
10 20 30
70 80 90 100 110 120
pF1KE3 ARNRRSPPVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRLLHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ARNRRSPPVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRLLHP
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 AAHPPQQNAVMVDIHDQLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AAHPPQQNAVMVDIHDQLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVVF
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE3 SGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPHHPPHLPPPGQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPHHPPHLPPPGQF
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE3 VPFQTQQSRSPLQRIENEVELLGEHLPVGGFTYPPSAHPPTLPPSAPLQFLTHDPLHQEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VPFQTQQSRSPLQRIENEVELLGEHLPVGGFTYPPSAHPPTLPPSAPLQFLTHDPLHQEV
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE3 SFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFSFELDVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFSFELDVE
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE3 DGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESR
340 350 360 370 380 390
430 440 450 460
pF1KE3 QLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE
::::::::::::::::::::::::::::::::::::::::::
XP_005 QLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE
400 410 420 430
>>XP_011516015 (OMIM: 612488) PREDICTED: E3 ubiquitin-pr (432 aa)
initn: 3129 init1: 3129 opt: 3129 Z-score: 1673.7 bits: 318.9 E(85289): 1.7e-86
Smith-Waterman score: 3129; 100.0% identity (100.0% similar) in 432 aa overlap (34-465:1-432)
10 20 30 40 50 60
pF1KE3 KSEDSPSPKRQRLSHSVFDYTSASPAPSPPMRPWEMTSNRQPPSVRPSQHHFSGERCNTP
::::::::::::::::::::::::::::::
XP_011 MRPWEMTSNRQPPSVRPSQHHFSGERCNTP
10 20 30
70 80 90 100 110 120
pF1KE3 ARNRRSPPVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRLLHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ARNRRSPPVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRLLHP
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 AAHPPQQNAVMVDIHDQLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AAHPPQQNAVMVDIHDQLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVVF
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE3 SGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPHHPPHLPPPGQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPHHPPHLPPPGQF
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE3 VPFQTQQSRSPLQRIENEVELLGEHLPVGGFTYPPSAHPPTLPPSAPLQFLTHDPLHQEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VPFQTQQSRSPLQRIENEVELLGEHLPVGGFTYPPSAHPPTLPPSAPLQFLTHDPLHQEV
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE3 SFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFSFELDVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFSFELDVE
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE3 DGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESR
340 350 360 370 380 390
430 440 450 460
pF1KE3 QLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE
::::::::::::::::::::::::::::::::::::::::::
XP_011 QLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE
400 410 420 430
>>XP_006716784 (OMIM: 612488) PREDICTED: E3 ubiquitin-pr (432 aa)
initn: 3129 init1: 3129 opt: 3129 Z-score: 1673.7 bits: 318.9 E(85289): 1.7e-86
Smith-Waterman score: 3129; 100.0% identity (100.0% similar) in 432 aa overlap (34-465:1-432)
10 20 30 40 50 60
pF1KE3 KSEDSPSPKRQRLSHSVFDYTSASPAPSPPMRPWEMTSNRQPPSVRPSQHHFSGERCNTP
::::::::::::::::::::::::::::::
XP_006 MRPWEMTSNRQPPSVRPSQHHFSGERCNTP
10 20 30
70 80 90 100 110 120
pF1KE3 ARNRRSPPVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRLLHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ARNRRSPPVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRLLHP
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 AAHPPQQNAVMVDIHDQLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AAHPPQQNAVMVDIHDQLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVVF
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE3 SGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPHHPPHLPPPGQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPHHPPHLPPPGQF
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE3 VPFQTQQSRSPLQRIENEVELLGEHLPVGGFTYPPSAHPPTLPPSAPLQFLTHDPLHQEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VPFQTQQSRSPLQRIENEVELLGEHLPVGGFTYPPSAHPPTLPPSAPLQFLTHDPLHQEV
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE3 SFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFSFELDVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFSFELDVE
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE3 DGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESR
340 350 360 370 380 390
430 440 450 460
pF1KE3 QLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE
::::::::::::::::::::::::::::::::::::::::::
XP_006 QLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE
400 410 420 430
>>XP_011516014 (OMIM: 612488) PREDICTED: E3 ubiquitin-pr (432 aa)
initn: 3129 init1: 3129 opt: 3129 Z-score: 1673.7 bits: 318.9 E(85289): 1.7e-86
Smith-Waterman score: 3129; 100.0% identity (100.0% similar) in 432 aa overlap (34-465:1-432)
10 20 30 40 50 60
pF1KE3 KSEDSPSPKRQRLSHSVFDYTSASPAPSPPMRPWEMTSNRQPPSVRPSQHHFSGERCNTP
::::::::::::::::::::::::::::::
XP_011 MRPWEMTSNRQPPSVRPSQHHFSGERCNTP
10 20 30
70 80 90 100 110 120
pF1KE3 ARNRRSPPVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRLLHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ARNRRSPPVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRLLHP
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 AAHPPQQNAVMVDIHDQLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AAHPPQQNAVMVDIHDQLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVVF
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE3 SGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPHHPPHLPPPGQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPHHPPHLPPPGQF
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE3 VPFQTQQSRSPLQRIENEVELLGEHLPVGGFTYPPSAHPPTLPPSAPLQFLTHDPLHQEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VPFQTQQSRSPLQRIENEVELLGEHLPVGGFTYPPSAHPPTLPPSAPLQFLTHDPLHQEV
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE3 SFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFSFELDVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFSFELDVE
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE3 DGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESR
340 350 360 370 380 390
430 440 450 460
pF1KE3 QLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE
::::::::::::::::::::::::::::::::::::::::::
XP_011 QLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE
400 410 420 430
>>XP_005251424 (OMIM: 612488) PREDICTED: E3 ubiquitin-pr (432 aa)
initn: 3129 init1: 3129 opt: 3129 Z-score: 1673.7 bits: 318.9 E(85289): 1.7e-86
Smith-Waterman score: 3129; 100.0% identity (100.0% similar) in 432 aa overlap (34-465:1-432)
10 20 30 40 50 60
pF1KE3 KSEDSPSPKRQRLSHSVFDYTSASPAPSPPMRPWEMTSNRQPPSVRPSQHHFSGERCNTP
::::::::::::::::::::::::::::::
XP_005 MRPWEMTSNRQPPSVRPSQHHFSGERCNTP
10 20 30
70 80 90 100 110 120
pF1KE3 ARNRRSPPVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRLLHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ARNRRSPPVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRLLHP
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 AAHPPQQNAVMVDIHDQLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AAHPPQQNAVMVDIHDQLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVVF
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE3 SGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPHHPPHLPPPGQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPHHPPHLPPPGQF
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE3 VPFQTQQSRSPLQRIENEVELLGEHLPVGGFTYPPSAHPPTLPPSAPLQFLTHDPLHQEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VPFQTQQSRSPLQRIENEVELLGEHLPVGGFTYPPSAHPPTLPPSAPLQFLTHDPLHQEV
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE3 SFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFSFELDVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFSFELDVE
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE3 DGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESR
340 350 360 370 380 390
430 440 450 460
pF1KE3 QLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE
::::::::::::::::::::::::::::::::::::::::::
XP_005 QLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE
400 410 420 430
>>XP_016869784 (OMIM: 612488) PREDICTED: E3 ubiquitin-pr (432 aa)
initn: 3129 init1: 3129 opt: 3129 Z-score: 1673.7 bits: 318.9 E(85289): 1.7e-86
Smith-Waterman score: 3129; 100.0% identity (100.0% similar) in 432 aa overlap (34-465:1-432)
10 20 30 40 50 60
pF1KE3 KSEDSPSPKRQRLSHSVFDYTSASPAPSPPMRPWEMTSNRQPPSVRPSQHHFSGERCNTP
::::::::::::::::::::::::::::::
XP_016 MRPWEMTSNRQPPSVRPSQHHFSGERCNTP
10 20 30
70 80 90 100 110 120
pF1KE3 ARNRRSPPVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRLLHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ARNRRSPPVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRLLHP
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 AAHPPQQNAVMVDIHDQLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AAHPPQQNAVMVDIHDQLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVVF
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE3 SGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPHHPPHLPPPGQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPHHPPHLPPPGQF
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE3 VPFQTQQSRSPLQRIENEVELLGEHLPVGGFTYPPSAHPPTLPPSAPLQFLTHDPLHQEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VPFQTQQSRSPLQRIENEVELLGEHLPVGGFTYPPSAHPPTLPPSAPLQFLTHDPLHQEV
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE3 SFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFSFELDVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFSFELDVE
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE3 DGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESR
340 350 360 370 380 390
430 440 450 460
pF1KE3 QLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE
::::::::::::::::::::::::::::::::::::::::::
XP_016 QLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE
400 410 420 430
465 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 09:06:08 2016 done: Sun Nov 6 09:06:09 2016
Total Scan time: 11.330 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]