Result of FASTA (ccds) for
pFN21AE3897
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3897, 193 aa
1>>>pF1KE3897 193 - 193 aa - 193 aa
Library: human.CCDS.faa
18921897 residues in 33420 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0915+/-0.000698; mu= 14.6195+/- 0.042
mean_var=65.1524+/-12.914, 0's: 0 Z-trim(109.8): 15 B-trim: 0 in 0/50
Lambda= 0.158895
statistics sampled from 11270 (11284) to 11270 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.338), width: 16
Scan time: 0.990
The best scores are: opt bits E(33420)
CCDS53342.1 TMED5 gene_id:50999|Hs109|chr1 ( 193) 1299 305.9 1e-83
CCDS743.1 TMED5 gene_id:50999|Hs109|chr1 ( 229) 1071 253.6 6.5e-68
CCDS12249.1 TMED1 gene_id:11018|Hs109|chr19 ( 227) 552 134.7 4.2e-32
CCDS54887.1 TICAM2 gene_id:100302736|Hs109|chr5 ( 404) 267 69.5 3.1e-12
CCDS4120.1 TMED7 gene_id:51014|Hs109|chr5 ( 224) 261 68.0 5e-12
CCDS54888.1 TICAM2 gene_id:100302736|Hs109|chr5 ( 188) 260 67.7 5.1e-12
>>CCDS53342.1 TMED5 gene_id:50999|Hs109|chr1 (193 aa)
initn: 1299 init1: 1299 opt: 1299 Z-score: 1616.5 bits: 305.9 E(33420): 1e-83
Smith-Waterman score: 1299; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193)
10 20 30 40 50 60
pF1KE3 MGDKIWLPFPVLLLAALPPVLLPGAAGFTPSLDSDFTFTLPAGQKECFYQPMPLKASLEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MGDKIWLPFPVLLLAALPPVLLPGAAGFTPSLDSDFTFTLPAGQKECFYQPMPLKASLEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EYQVLDGAGLDIDFHLASPEGKTLVFEQRKSDGVHTVETEVGDYMFCFDNTFSTISEKVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EYQVLDGAGLDIDFHLASPEGKTLVFEQRKSDGVHTVETEVGDYMFCFDNTFSTISEKVI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 FFELILDNMGEQAQEQEDWKKYITGTDILDMKLEDILDPIIKIASDVQIRLHLGIHQQHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FFELILDNMGEQAQEQEDWKKYITGTDILDMKLEDILDPIIKIASDVQIRLHLGIHQQHQ
130 140 150 160 170 180
190
pF1KE3 VQTKQKWAHTNSA
:::::::::::::
CCDS53 VQTKQKWAHTNSA
190
>>CCDS743.1 TMED5 gene_id:50999|Hs109|chr1 (229 aa)
initn: 1095 init1: 1068 opt: 1071 Z-score: 1332.9 bits: 253.6 E(33420): 6.5e-68
Smith-Waterman score: 1071; 93.1% identity (96.0% similar) in 173 aa overlap (1-173:1-173)
10 20 30 40 50 60
pF1KE3 MGDKIWLPFPVLLLAALPPVLLPGAAGFTPSLDSDFTFTLPAGQKECFYQPMPLKASLEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MGDKIWLPFPVLLLAALPPVLLPGAAGFTPSLDSDFTFTLPAGQKECFYQPMPLKASLEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EYQVLDGAGLDIDFHLASPEGKTLVFEQRKSDGVHTVETEVGDYMFCFDNTFSTISEKVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 EYQVLDGAGLDIDFHLASPEGKTLVFEQRKSDGVHTVETEVGDYMFCFDNTFSTISEKVI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 FFELILDNMGEQAQEQEDWKKYITGTDILDMKLEDILDPIIKIASDVQIRLHLGIHQQHQ
:::::::::::::::::::::::::::::::::::::. : .: : .. :.
CCDS74 FFELILDNMGEQAQEQEDWKKYITGTDILDMKLEDILESINSIKSRLSKSGHIQTLLRAF
130 140 150 160 170 180
190
pF1KE3 VQTKQKWAHTNSA
CCDS74 EARDRNIQESNFDRVNFWSMVNLVVMVVVSAIQVYMLKSLFEDKRKSRT
190 200 210 220
>>CCDS12249.1 TMED1 gene_id:11018|Hs109|chr19 (227 aa)
initn: 560 init1: 359 opt: 552 Z-score: 690.0 bits: 134.7 E(33420): 4.2e-32
Smith-Waterman score: 552; 57.9% identity (79.3% similar) in 145 aa overlap (17-160:16-158)
10 20 30 40 50 60
pF1KE3 MGDKIWLPFPVLLLAALPPVLLPGAAGFTPSLDSDFTFTLPAGQKECFYQPMPLKASLEI
.::: . :.:: : :..::: ::::.:.:::: : .::::
CCDS12 MMAAGAALALALWLLMPPVEV-GGAGPPPIQDGEFTFLLPAGRKQCFYQSAPANASLET
10 20 30 40 50
70 80 90 100 110
pF1KE3 EYQVLDGAGLDIDFHLASPEGKTLVFEQRKSDGVHTVE-TEVGDYMFCFDNTFSTISEKV
::::. :::::.:: : ::.: :: :.::.::::::: ::.::: .::::.:::::::.
CCDS12 EYQVIGGAGLDVDFTLESPQGVLLVSESRKADGVHTVEPTEAGDYKLCFDNSFSTISEKL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 IFFELILDNMGEQAQEQEDWKKYITGTDILDMKLEDILDPIIKIASDVQIRLHLGIHQQH
.:::::.:.. .. .: : : . . ..::.:.::: . :
CCDS12 VFFELIFDSL-QDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRA
120 130 140 150 160 170
180 190
pF1KE3 QVQTKQKWAHTNSA
CCDS12 FEARDRNLQEGNLERVNFWSAVNVAVLLLVAVLQVCTLKRFFQDKRPVPT
180 190 200 210 220
>>CCDS54887.1 TICAM2 gene_id:100302736|Hs109|chr5 (404 aa)
initn: 205 init1: 139 opt: 267 Z-score: 333.3 bits: 69.5 E(33420): 3.1e-12
Smith-Waterman score: 267; 28.7% identity (62.4% similar) in 181 aa overlap (13-190:21-191)
10 20 30 40 50
pF1KE3 MGDKIWLPFPVLLLAALPPVLLPGAAGFTPSLDSDFTFTLPAGQKECFYQPM
::: : .:.:: .: :..:: :: . :.:::. .
CCDS54 MPRPGSAQRWAAVAGRWGCRLLALL--LLVPGPGG-----ASEITFELPDNAKQCFYEDI
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 PLKASLEIEYQVLDGAGLDIDFHLASPEGKTLVFEQRKS-DGVHTVETEVGDYMFCFDNT
.. .:.::. :. :.: .: .:.::.: :..:. :. . .. : : :::.:
CCDS54 AQGTKCTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNE
60 70 80 90 100 110
120 130 140 150 160
pF1KE3 FSTISEKVIFFELILDNMGEQAQ--EQEDWKKYITGTDILDMKLEDILDPIIKIASDVQI
:::...:...:.. ..::. .:. . .: . ..... : .: . ..
CCDS54 FSTFTHKTVYFDF---QVGEDPPLFPSENRVSALTQMESACVSIHEALKSVIDYQTHFRL
120 130 140 150 160 170
170 180 190
pF1KE3 RLHLGIHQQHQVQTKQKWAHTNSA
: : . ....:. . :.
CCDS54 REAQGRSRAEDLNTRVAYWHSVDTSPGYHESDSKKSEDLSLCNVAEHSNTTEGPTGKQEG
180 190 200 210 220 230
>>CCDS4120.1 TMED7 gene_id:51014|Hs109|chr5 (224 aa)
initn: 205 init1: 139 opt: 261 Z-score: 329.6 bits: 68.0 E(33420): 5e-12
Smith-Waterman score: 261; 28.9% identity (62.2% similar) in 180 aa overlap (13-188:21-190)
10 20 30 40 50
pF1KE3 MGDKIWLPFPVLLLAALPPVLLPGAAGFTPSLDSDFTFTLPAGQKECFYQPM
::: : .:.:: .: :..:: :: . :.:::. .
CCDS41 MPRPGSAQRWAAVAGRWGCRLLALL--LLVPGPGG-----ASEITFELPDNAKQCFYEDI
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 PLKASLEIEYQVLDGAGLDIDFHLASPEGKTLVFEQRKS-DGVHTVETEVGDYMFCFDNT
.. .:.::. :. :.: .: .:.::.: :..:. :. . .. : : :::.:
CCDS41 AQGTKCTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNE
60 70 80 90 100 110
120 130 140 150 160
pF1KE3 FSTISEKVIFFELILDNMGEQAQ--EQEDWKKYITGTDILDMKLEDILDPIIKIASDVQI
:::...:...:.. ..::. .:. . .: . ..... : .: . ..
CCDS41 FSTFTHKTVYFDF---QVGEDPPLFPSENRVSALTQMESACVSIHEALKSVIDYQTHFRL
120 130 140 150 160 170
170 180 190
pF1KE3 RLHLGIHQQHQVQTK-QKWAHTNSA
: : . ....:. :.
CCDS41 REAQGRSRAEDLNTRVAYWSVGEALILLVVSIGQVFLLKSFFSDKRTTTTRVGS
180 190 200 210 220
>>CCDS54888.1 TICAM2 gene_id:100302736|Hs109|chr5 (188 aa)
initn: 205 init1: 139 opt: 260 Z-score: 329.4 bits: 67.7 E(33420): 5.1e-12
Smith-Waterman score: 260; 29.1% identity (62.9% similar) in 175 aa overlap (13-184:21-185)
10 20 30 40 50
pF1KE3 MGDKIWLPFPVLLLAALPPVLLPGAAGFTPSLDSDFTFTLPAGQKECFYQPM
::: : .:.:: .: :..:: :: . :.:::. .
CCDS54 MPRPGSAQRWAAVAGRWGCRLLALL--LLVPGPGG-----ASEITFELPDNAKQCFYEDI
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 PLKASLEIEYQVLDGAGLDIDFHLASPEGKTLVFEQRKS-DGVHTVETEVGDYMFCFDNT
.. .:.::. :. :.: .: .:.::.: :..:. :. . .. : : :::.:
CCDS54 AQGTKCTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNE
60 70 80 90 100 110
120 130 140 150 160
pF1KE3 FSTISEKVIFFELILDNMGEQAQ--EQEDWKKYITGTDILDMKLEDILDPIIKIASDVQI
:::...:...:.. ..::. .:. . .: . ..... : .: . ..
CCDS54 FSTFTHKTVYFDF---QVGEDPPLFPSENRVSALTQMESACVSIHEALKSVIDYQTHFRL
120 130 140 150 160 170
170 180 190
pF1KE3 RLHLGIHQQHQVQTKQKWAHTNSA
: : . ....:.
CCDS54 REAQGRSRAEDLNTRVAY
180
193 residues in 1 query sequences
18921897 residues in 33420 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Aug 4 20:32:23 2021 done: Wed Aug 4 20:32:24 2021
Total Scan time: 0.990 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]