FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3894, 309 aa
  1>>>pF1KE3894     309 - 309 aa - 309 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6542+/-0.000735; mu= 12.2388+/- 0.045
 mean_var=130.3024+/-26.262, 0's: 0 Z-trim(113.7): 10  B-trim: 161 in 1/50
 Lambda= 0.112356
 statistics sampled from 14504 (14510) to 14504 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.434), width:  16
 Scan time:  1.330

The best scores are:                                      opt bits E(33420)
CCDS10613.2 UBFD1 gene_id:56061|Hs109|chr16        ( 309) 2061 344.5 6.3e-95


>>CCDS10613.2 UBFD1 gene_id:56061|Hs109|chr16             (309 aa)
 initn: 2061 init1: 2061 opt: 2061  Z-score: 1817.9  bits: 344.5 E(33420): 6.3e-95
Smith-Waterman score: 2061; 100.0% identity (100.0% similar) in 309 aa overlap (1-309:1-309)

               10        20        30        40        50        60
pF1KE3 MAAAGAPDGMEEPGMDTEAETVATEAPARPVNCLEAEAAAGAAAEDSGAARGSLQPAPAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAAAGAPDGMEEPGMDTEAETVATEAPARPVNCLEAEAAAGAAAEDSGAARGSLQPAPAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 PPGDPAAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PPGDPAAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 PPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEENK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEENK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 KEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLPTVPLSGMYNKSGGKVRLTFKLEQDQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLPTVPLSGMYNKSGGKVRLTFKLEQDQL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 WIGTKERTEKLPMGSIKNVVSEPIEGHEDYHMMAFQLGPTEASYYWVYWVPTQYVDAIKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 WIGTKERTEKLPMGSIKNVVSEPIEGHEDYHMMAFQLGPTEASYYWVYWVPTQYVDAIKD
              250       260       270       280       290       300

                
pF1KE3 TVLGKWQYF
       :::::::::
CCDS10 TVLGKWQYF
                




309 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Aug  4 20:44:09 2021 done: Wed Aug  4 20:44:10 2021
 Total Scan time:  1.330 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]