FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3886, 116 aa
  1>>>pF1KE3886     116 - 116 aa - 116 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2756+/-0.000635; mu= 10.9919+/- 0.038
 mean_var=68.3326+/-13.371, 0's: 0 Z-trim(111.2): 9  B-trim: 0 in 0/49
 Lambda= 0.155153
 statistics sampled from 12388 (12392) to 12388 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.371), width:  16
 Scan time:  0.820

The best scores are:                                      opt bits E(33420)
CCDS5788.1 NDUFA5 gene_id:4698|Hs109|chr7          ( 116)  772 180.7 1.8e-46
CCDS64760.1 NDUFA5 gene_id:4698|Hs109|chr7         ( 116)  732 171.8 8.9e-44
CCDS75655.1 NDUFA5 gene_id:4698|Hs109|chr7         ( 101)  629 148.7 6.9e-37
CCDS75656.1 NDUFA5 gene_id:4698|Hs109|chr7         (  77)  393 95.8 4.4e-21


>>CCDS5788.1 NDUFA5 gene_id:4698|Hs109|chr7               (116 aa)
 initn: 772 init1: 772 opt: 772  Z-score: 948.0  bits: 180.7 E(33420): 1.8e-46
Smith-Waterman score: 772; 100.0% identity (100.0% similar) in 116 aa overlap (1-116:1-116)

               10        20        30        40        50        60
pF1KE3 MAGVLKKTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 MAGVLKKTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVK
               10        20        30        40        50        60

               70        80        90       100       110      
pF1KE3 AEPDVKKLEDQLQGGQLEEVILQAEHELNLARKMREWKLWEPLVEEPPADQWKWPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 AEPDVKKLEDQLQGGQLEEVILQAEHELNLARKMREWKLWEPLVEEPPADQWKWPI
               70        80        90       100       110      

>>CCDS64760.1 NDUFA5 gene_id:4698|Hs109|chr7              (116 aa)
 initn: 732 init1: 732 opt: 732  Z-score: 899.6  bits: 171.8 E(33420): 8.9e-44
Smith-Waterman score: 732; 99.1% identity (100.0% similar) in 110 aa overlap (7-116:7-116)

               10        20        30        40        50        60
pF1KE3 MAGVLKKTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVK
             .:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MPYRVGQTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVK
               10        20        30        40        50        60

               70        80        90       100       110      
pF1KE3 AEPDVKKLEDQLQGGQLEEVILQAEHELNLARKMREWKLWEPLVEEPPADQWKWPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 AEPDVKKLEDQLQGGQLEEVILQAEHELNLARKMREWKLWEPLVEEPPADQWKWPI
               70        80        90       100       110      

>>CCDS75655.1 NDUFA5 gene_id:4698|Hs109|chr7              (101 aa)
 initn: 629 init1: 629 opt: 629  Z-score: 775.9  bits: 148.7 E(33420): 6.9e-37
Smith-Waterman score: 630; 87.1% identity (87.1% similar) in 116 aa overlap (1-116:1-101)

               10        20        30        40        50        60
pF1KE3 MAGVLKKTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVK
       :::::::               ::::::::::::::::::::::::::::::::::::::
CCDS75 MAGVLKK---------------RLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVK
                              10        20        30        40     

               70        80        90       100       110      
pF1KE3 AEPDVKKLEDQLQGGQLEEVILQAEHELNLARKMREWKLWEPLVEEPPADQWKWPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AEPDVKKLEDQLQGGQLEEVILQAEHELNLARKMREWKLWEPLVEEPPADQWKWPI
          50        60        70        80        90       100 

>>CCDS75656.1 NDUFA5 gene_id:4698|Hs109|chr7              (77 aa)
 initn: 523 init1: 393 opt: 393  Z-score: 492.1  bits: 95.8 E(33420): 4.4e-21
Smith-Waterman score: 449; 66.4% identity (66.4% similar) in 116 aa overlap (1-116:1-77)

               10        20        30        40        50        60
pF1KE3 MAGVLKKTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVK
       ::::::::::::::::::::::                                      
CCDS75 MAGVLKKTTGLVGLAVCNTPHE--------------------------------------
               10        20                                        

               70        80        90       100       110      
pF1KE3 AEPDVKKLEDQLQGGQLEEVILQAEHELNLARKMREWKLWEPLVEEPPADQWKWPI
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 -EPDVKKLEDQLQGGQLEEVILQAEHELNLARKMREWKLWEPLVEEPPADQWKWPI
              30        40        50        60        70       




116 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Aug  4 20:40:22 2021 done: Wed Aug  4 20:40:22 2021
 Total Scan time:  0.820 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]