FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3881, 452 aa
  1>>>pF1KE3881     452 - 452 aa - 452 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8313+/-0.00117; mu= 14.7671+/- 0.070
 mean_var=70.6604+/-14.008, 0's: 0 Z-trim(101.6): 21  B-trim: 159 in 1/51
 Lambda= 0.152576
 statistics sampled from 6678 (6680) to 6678 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.552), E-opt: 0.2 (0.2), width:  16
 Scan time:  1.290

The best scores are:                                      opt bits E(33420)
CCDS687.2 IFI44L gene_id:10964|Hs109|chr1          ( 452) 2978 665.2 3.8e-191
CCDS688.1 IFI44 gene_id:10561|Hs109|chr1           ( 444) 1057 242.4 7.4e-64


>>CCDS687.2 IFI44L gene_id:10964|Hs109|chr1               (452 aa)
 initn: 2978 init1: 2978 opt: 2978  Z-score: 3545.3  bits: 665.2 E(33420): 3.8e-191
Smith-Waterman score: 2978; 100.0% identity (100.0% similar) in 452 aa overlap (1-452:1-452)

               10        20        30        40        50        60
pF1KE3 MEVTTRLTWNDENHLRKLLGNVSLSLLYKSSVHGGSIEDMVERCSRQGCTITMAYIDYNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MEVTTRLTWNDENHLRKLLGNVSLSLLYKSSVHGGSIEDMVERCSRQGCTITMAYIDYNM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 IVAFMLGNYINLHESSTEPNDSLWFSLQKKNDTTEIETLLLNTAPKIIDEQLVCRLSKTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 IVAFMLGNYINLHESSTEPNDSLWFSLQKKNDTTEIETLLLNTAPKIIDEQLVCRLSKTD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 IFIICRDNKIYLDKMITRNLKLRFYGHRQYLECEVFRVEGIKDNLDDIKRIIKAREHRNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 IFIICRDNKIYLDKMITRNLKLRFYGHRQYLECEVFRVEGIKDNLDDIKRIIKAREHRNR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 LLADIRDYRPYADLVSEIRILLVGPVGSGKSSFFNSVKSIFHGHVTGQAVVGSDITSITE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 LLADIRDYRPYADLVSEIRILLVGPVGSGKSSFFNSVKSIFHGHVTGQAVVGSDITSITE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 RYRIYSVKDGKNGKSLPFMLCDTMGLDGAEGAGLCMDDIPHILKGCMPDRYQFNSRKPIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 RYRIYSVKDGKNGKSLPFMLCDTMGLDGAEGAGLCMDDIPHILKGCMPDRYQFNSRKPIT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 PEHSTFITSPSLKDRIHCVAYVLDINSIDNLYSKMLAKVKQVHKEVLNCGIAYVALLTKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 PEHSTFITSPSLKDRIHCVAYVLDINSIDNLYSKMLAKVKQVHKEVLNCGIAYVALLTKV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 DDCSEVLQDNFLNMSRSMTSQSRVMNVHKMLGIPISNILMVGNYASDLELDPMKDILILS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 DDCSEVLQDNFLNMSRSMTSQSRVMNVHKMLGIPISNILMVGNYASDLELDPMKDILILS
              370       380       390       400       410       420

              430       440       450  
pF1KE3 ALRQMLRAADDFLEDLPLEETGAIERALQPCI
       ::::::::::::::::::::::::::::::::
CCDS68 ALRQMLRAADDFLEDLPLEETGAIERALQPCI
              430       440       450  

>>CCDS688.1 IFI44 gene_id:10561|Hs109|chr1                (444 aa)
 initn: 1167 init1: 583 opt: 1057  Z-score: 1260.1  bits: 242.4 E(33420): 7.4e-64
Smith-Waterman score: 1201; 45.1% identity (72.1% similar) in 455 aa overlap (1-451:1-439)

               10        20        30        40        50        60
pF1KE3 MEVTTRLTWNDENHLRKLLGNVSLSLLYKSSVHGGSIEDMVERCSRQGCTITMAYIDYNM
       : :::::::  :. :.. .:.  ::::::.::::     ...::  :: :.:. : . ..
CCDS68 MAVTTRLTWLHEKILQNHFGGKRLSLLYKGSVHGFRNGVLLDRCCNQGPTLTVIYSEDHI
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KE3 IVAFMLGNYINLHESSTEPNDSLWFSLQKKNDTTEIETLLLNTAPKIIDEQLVCRLSK--
       : :.   .: . . .:      . :.::   ::   :  :   .:. .   . : ..:  
CCDS68 IGAYAEESYQEGKYASI-----ILFALQ---DTKISEWKLGLCTPETL---FCCDVTKYN
               70             80           90       100            

        120       130       140       150       160       170      
pF1KE3 --TDIFIICRDNKIYLDKMITRNLKLRFYGHRQYLECEVFRVEGIKDNLDDIKRIIKARE
         :.. :  :. :. .:    .:: :      .  . :::: :   :.::. ..:  . :
CCDS68 SPTNFQIDGRNRKVIMDLKTMENLGLAQNCTISIQDYEVFRCE---DSLDE-RKIKGVIE
     110       120       130       140       150           160     

        180       190       200       210       220       230      
pF1KE3 HRNRLLADIRDYRPYADLVSEIRILLVGPVGSGKSSFFNSVKSIFHGHVTGQAVVGSDIT
        :. ::. .: :.::..::..:::::.::.:.:::::::::.:.:.:::: ::.::.. :
CCDS68 LRKSLLSALRTYEPYGSLVQQIRILLLGPIGAGKSSFFNSVRSVFQGHVTHQALVGTNTT
         170       180       190       200       210       220     

        240       250       260       270       280       290      
pF1KE3 SITERYRIYSVKDGKNGKSLPFMLCDTMGLDGAEGAGLCMDDIPHILKGCMPDRYQFNSR
       .:.:.:: ::..:::.:: :::.:::..::.  :: ::: ::: .::.: . ::::::  
CCDS68 GISEKYRTYSIRDGKDGKYLPFILCDSLGLSEKEG-GLCRDDIFYILNGNIRDRYQFNPM
         230       240       250       260        270       280    

        300       310       320       330       340       350      
pF1KE3 KPITPEHSTFITSPSLKDRIHCVAYVLDINSIDNLYSKMLAKVKQVHKEVLNCGIAYVAL
       . :  .:  .: ::::::::::::.:.: .::. . :.:..:.:....:..: :...:::
CCDS68 ESIKLNHHDYIDSPSLKDRIHCVAFVFDASSIQYFSSQMIVKIKRIRRELVNAGVVHVAL
          290       300       310       320       330       340    

        360       370       380       390       400       410      
pF1KE3 LTKVDDCSEVLQDNFLNMSRSMTSQSRVMNVHKMLGIPISNILMVGNYASDLELDPMKDI
       ::.::. . . . ..... :    .:.. .:.. ::. .:.: .:.::.:. ::::.::.
CCDS68 LTHVDSMDLITKGDLIEIERCEPVRSKLEEVQRKLGFALSDISVVSNYSSEWELDPVKDV
          350       360       370       380       390       400    

        420       430       440       450      
pF1KE3 LILSALRQMLRAADDFLEDLPLEETGAIERALQPCI    
       :::::::.:: ::::::::::.:. : ... .  :     
CCDS68 LILSALRRMLWAADDFLEDLPFEQIGNLREEIINCAQGKK
          410       420       430       440    




452 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Aug  4 20:37:46 2021 done: Wed Aug  4 20:37:46 2021
 Total Scan time:  1.290 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]