FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3871, 132 aa
  1>>>pF1KE3871     132 - 132 aa - 132 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3256+/-0.000589; mu= 12.0305+/- 0.036
 mean_var=76.1779+/-14.871, 0's: 0 Z-trim(113.3): 9  B-trim: 0 in 0/51
 Lambda= 0.146947
 statistics sampled from 14144 (14147) to 14144 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.794), E-opt: 0.2 (0.423), width:  16
 Scan time:  0.850

The best scores are:                                      opt bits E(33420)
CCDS3695.1 FAM241A gene_id:132720|Hs109|chr4       ( 132)  875 193.6 3.1e-50


>>CCDS3695.1 FAM241A gene_id:132720|Hs109|chr4            (132 aa)
 initn: 875 init1: 875 opt: 875  Z-score: 1015.6  bits: 193.6 E(33420): 3.1e-50
Smith-Waterman score: 875; 97.7% identity (97.7% similar) in 132 aa overlap (1-132:1-132)

               10        20        30        40        50        60
pF1KE3 MCSAGELLRGGDGGERDEDGDALAEREAAGTEWDPGASQRRRGQRQKESEQDVEDSQNHT
       ::::::::::::::::::::::::::::::: :::::: :::::: ::::::::::::::
CCDS36 MCSAGELLRGGDGGERDEDGDALAEREAAGTGWDPGASPRRRGQRPKESEQDVEDSQNHT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 GEPVGDDYKKMGTLFGELNKNLINMGFTRMYFGERIVEPVIVIFFWVMLWFLGLQALGLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 GEPVGDDYKKMGTLFGELNKNLINMGFTRMYFGERIVEPVIVIFFWVMLWFLGLQALGLV
               70        80        90       100       110       120

              130  
pF1KE3 AVLCLVIIYVQQ
       ::::::::::::
CCDS36 AVLCLVIIYVQQ
              130  




132 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Aug  4 20:33:17 2021 done: Wed Aug  4 20:33:17 2021
 Total Scan time:  0.850 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]