FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3808, 359 aa
  1>>>pF1KE3808 359 - 359 aa - 359 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.0475+/-0.000801; mu= 1.0070+/- 0.048
 mean_var=288.2349+/-65.353, 0's: 0 Z-trim(116.4): 264  B-trim: 1020 in 1/53
 Lambda= 0.075544
 statistics sampled from 16730 (17064) to 16730 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.524), width:  16
 Scan time:  3.180

The best scores are:                                      opt bits E(32554)
CCDS74457.1 SBK3 gene_id:100130827|Hs108|chr19     ( 359) 2491 284.3 1.1e-76
CCDS42631.1 SBK2 gene_id:646643|Hs108|chr19        ( 348)  760 95.6 6.6e-20
CCDS32416.1 SBK1 gene_id:388228|Hs108|chr16        ( 424)  674 86.4   5e-17


>>CCDS74457.1 SBK3 gene_id:100130827|Hs108|chr19          (359 aa)
 initn: 2491 init1: 2491 opt: 2491  Z-score: 1490.3  bits: 284.3 E(32554): 1.1e-76
Smith-Waterman score: 2491; 100.0% identity (100.0% similar) in 359 aa overlap (1-359:1-359)

               10        20        30        40        50        60
pF1KE3 MERRASETPEDGDPEEDTATALQRLVELTTSRVTPVRSLRDQYHLIRKLGSGSYGRVLLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MERRASETPEDGDPEEDTATALQRLVELTTSRVTPVRSLRDQYHLIRKLGSGSYGRVLLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 QPHQGGPAVALKLLRRDLVLRSTFLREFCVGRCVSAHPGLLQTLAGPLQTPRYFAFAQEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QPHQGGPAVALKLLRRDLVLRSTFLREFCVGRCVSAHPGLLQTLAGPLQTPRYFAFAQEY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 APCGDLSGMLQERGLPELLVKRVVAQLAGALDFLHSRGLVHADVKPDNVLVFDPVCSRVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 APCGDLSGMLQERGLPELLVKRVVAQLAGALDFLHSRGLVHADVKPDNVLVFDPVCSRVA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 LGDLGLTRPEGSPTPAPPVPLPTAPPELCLLLPPDTLPLRPAVDSWGLGVLLFCAATACF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LGDLGLTRPEGSPTPAPPVPLPTAPPELCLLLPPDTLPLRPAVDSWGLGVLLFCAATACF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 PWDVALAPNPEFEAFAGWVTTKPQPPQPPPPWDQFAPPALALLQGLLDLDPETRSPPLAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PWDVALAPNPEFEAFAGWVTTKPQPPQPPPPWDQFAPPALALLQGLLDLDPETRSPPLAV
              250       260       270       280       290       300

              310       320       330       340       350         
pF1KE3 LDFLGDDWGLQGNREGPGVLGSAVSYEDREEGGSSLEEWTDEGDDSKSGGRTGTDGGAP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LDFLGDDWGLQGNREGPGVLGSAVSYEDREEGGSSLEEWTDEGDDSKSGGRTGTDGGAP
              310       320       330       340       350         

>>CCDS42631.1 SBK2 gene_id:646643|Hs108|chr19             (348 aa)
 initn: 735 init1: 274 opt: 760  Z-score: 470.9  bits: 95.6 E(32554): 6.6e-20
Smith-Waterman score: 760; 42.0% identity (64.8% similar) in 324 aa overlap (8-327:28-345)

                                   10        20        30        40
pF1KE3                     MERRASETPEDGDPEEDTATALQRLVELTTSRVTPVRSLR
                                  : :. .  ...: ::. .  .: :  : ::.  
CCDS42 MPGKQSEEGPAEAGASEDSEEEGLGGLTLEELQQGQEAARALEDM--MTLSAQTLVRAEV
               10        20        30        40          50        

                50        60        70        80        90         
pF1KE3 DQ-YHLIRKLGSGSYGRVLLAQPHQGGPAVALKLLRRDLVLRSTFLREFCVGRCVSAHPG
       :. :. .: ::.: ::::::.  .: :  .::: : .  .    :: :::::  ..:: .
CCDS42 DELYEEVRPLGQGCYGRVLLVTHRQKGTPLALKQLPKPRTSLRGFLYEFCVGLSLGAHSA
       60        70        80        90       100       110        

     100       110       120       130        140       150        
pF1KE3 LLQTLAGPLQTPRYFAFAQEYAPCGDLSGMLQER-GLPELLVKRVVAQLAGALDFLHSRG
       .. . .  ... . ..:  : .  ::: ...: . :::.  :.: .::::.::...:.::
CCDS42 IVTAYGIGIESAHSYSFLTEPVLHGDLMAFIQPKVGLPQPAVHRCAAQLASALEYIHARG
      120       130       140       150       160       170        

      160       170       180       190       200       210        
pF1KE3 LVHADVKPDNVLVFDPVCSRVALGDLGLTRPEGSPTPAPPVPLPTAPPELCLLLP-PDTL
       ::. :.::.:::: ::.: :  : :.: :::.:.       :.: . ::::   : :. :
CCDS42 LVYRDLKPENVLVCDPACRRFKLTDFGHTRPRGTLLRLAGPPIPYTAPELCAPPPLPEGL
      180       190       200       210       220       230        

       220       230       240        250       260       270      
pF1KE3 PLRPAVDSWGLGVLLFCAATACFPWDVALAP-NPEFEAFAGWVTTKPQPPQPPPPWDQFA
       :..::.:.:.:::::::  :. ::::  ::  .: .: :  : ..  :: . : ::  .:
CCDS42 PIQPALDAWALGVLLFCLLTGYFPWDRPLAEADPFYEDFLIWQASG-QPRDRPQPWFGLA
      240       250       260       270       280        290       

        280       290       300       310       320       330      
pF1KE3 PPALALLQGLLDLDPETRSPPLAVLDFLGDDWGLQGNREGPGVLGSAVSYEDREEGGSSL
         : :::.::::  :. ::  .:. . ::  :    .::: .   .::  :         
CCDS42 AAADALLRGLLDPHPRRRSAVIAIREHLGRPWR---QREGEAEAVGAVEEEAGQ      
       300       310       320       330          340              

        340       350         
pF1KE3 EEWTDEGDDSKSGGRTGTDGGAP

>>CCDS32416.1 SBK1 gene_id:388228|Hs108|chr16             (424 aa)
 initn: 672 init1: 390 opt: 674  Z-score: 419.2  bits: 86.4 E(32554): 5e-17
Smith-Waterman score: 674; 39.9% identity (65.2% similar) in 276 aa overlap (30-304:40-313)

                10        20        30        40        50         
pF1KE3  MERRASETPEDGDPEEDTATALQRLVELTTSRVTPVRSLRDQYHLIRKLGSGSYGRVLL
                                     : :.  . ..  .:.:.:.::.:.::.: :
CCDS32 PPRSLTCCGPGTAPGPGAGVPLLTEDMQALTLRTLAASDVTKHYELVRELGKGTYGKVDL
      10        20        30        40        50        60         

      60        70        80        90       100       110         
pF1KE3 AQPHQGGPAVALKLLRRDLVLRSTFLREFCVGRCVSAHPGLLQTLAGPLQTPRYFAFAQE
       .  .  :  .:::.. .. .  ..::::  .   .:. : .....   ..:   ..::::
CCDS32 VVYKGTGTKMALKFVNKSKTKLKNFLREVSITNSLSSSPFIIKVFDVVFETEDCYVFAQE
      70        80        90       100       110       120         

     120       130        140       150       160       170        
pF1KE3 YAPCGDLSGMLQER-GLPELLVKRVVAQLAGALDFLHSRGLVHADVKPDNVLVFDPVCSR
       ::: :::  ..  . ::::  ::: : ::. ::::.:.: ::: :.::.:::.::  : :
CCDS32 YAPAGDLFDIIPPQVGLPEDTVKRCVQQLGLALDFMHGRQLVHRDIKPENVLLFDRECRR
     130       140       150       160       170       180         

      180       190       200       210       220       230        
pF1KE3 VALGDLGLTRPEGSPTPAPPVPLPTAPPELCLLLPPDTLPLRPAVDSWGLGVLLFCAATA
       : :.:.:.::  :  .      .: . ::.:     : : .  .:: :..:::.::. :.
CCDS32 VKLADFGMTRRVGCRVKRVSGTIPYTAPEVCQAGRADGLAVDTGVDVWAFGVLIFCVLTG
     190       200       210       220       230       240         

      240       250       260       270       280       290        
pF1KE3 CFPWDVALAPNPEFEAFAGWVTTKPQPPQPPPPWDQFAPPALALLQGLLDLDPETRSPPL
        :::..: . .  :: :. :   . . :  :  : .:. ::: ..: :: :.:: :.:  
CCDS32 NFPWEAASGADAFFEEFVRW--QRGRLPGLPSQWRRFTEPALRMFQRLLALEPERRGPAK
     250       260         270       280       290       300       

      300       310       320       330       340       350        
pF1KE3 AVLDFLGDDWGLQGNREGPGVLGSAVSYEDREEGGSSLEEWTDEGDDSKSGGRTGTDGGA
        :. ::                                                      
CCDS32 EVFRFLKHELTSELRRRPSHRARKPPGDRPPAAGPLRLEAPGPLKRTVLTESGSGSRPAP
       310       320       330       340       350       360       




359 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:39:15 2016 done: Sun Nov  6 06:39:16 2016
 Total Scan time:  3.180 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]