Result of FASTA (omim) for
pFN21AE3805
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3805, 230 aa
1>>>pF1KE3805 230 - 230 aa - 230 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5779+/-0.000322; mu= 12.2822+/- 0.020
mean_var=68.4331+/-13.773, 0's: 0 Z-trim(115.8): 22 B-trim: 238 in 3/52
Lambda= 0.155039
statistics sampled from 26528 (26550) to 26528 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.311), width: 16
Scan time: 5.540
The best scores are: opt bits E(85289)
NP_114122 (OMIM: 611756) ropporin-1-like protein [ ( 230) 1552 355.8 3.5e-98
NP_001188395 (OMIM: 611756) ropporin-1-like protei ( 230) 1552 355.8 3.5e-98
XP_016865436 (OMIM: 611756) PREDICTED: ropporin-1- ( 220) 1336 307.5 1.2e-83
XP_016865435 (OMIM: 611756) PREDICTED: ropporin-1- ( 232) 1336 307.5 1.2e-83
XP_006714566 (OMIM: 611756) PREDICTED: ropporin-1- ( 257) 1336 307.5 1.3e-83
XP_006714567 (OMIM: 611756) PREDICTED: ropporin-1- ( 257) 1336 307.5 1.3e-83
XP_011511236 (OMIM: 611757) PREDICTED: ropporin-1A ( 212) 542 129.9 3.3e-30
NP_001304703 (OMIM: 611757) ropporin-1A isoform a ( 212) 542 129.9 3.3e-30
XP_011511235 (OMIM: 611757) PREDICTED: ropporin-1A ( 212) 542 129.9 3.3e-30
NP_060048 (OMIM: 611757) ropporin-1A isoform a [Ho ( 212) 542 129.9 3.3e-30
NP_001304704 (OMIM: 611757) ropporin-1A isoform b ( 120) 288 73.0 2.6e-13
>>NP_114122 (OMIM: 611756) ropporin-1-like protein [Homo (230 aa)
initn: 1552 init1: 1552 opt: 1552 Z-score: 1883.7 bits: 355.8 E(85289): 3.5e-98
Smith-Waterman score: 1552; 99.6% identity (99.6% similar) in 230 aa overlap (1-230:1-230)
10 20 30 40 50 60
pF1KE3 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDREGGPARIPFKTFSYVYRYLARLDS
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
NP_114 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS
130 140 150 160 170 180
190 200 210 220 230
pF1KE3 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH
190 200 210 220 230
>>NP_001188395 (OMIM: 611756) ropporin-1-like protein [H (230 aa)
initn: 1552 init1: 1552 opt: 1552 Z-score: 1883.7 bits: 355.8 E(85289): 3.5e-98
Smith-Waterman score: 1552; 99.6% identity (99.6% similar) in 230 aa overlap (1-230:1-230)
10 20 30 40 50 60
pF1KE3 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDREGGPARIPFKTFSYVYRYLARLDS
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
NP_001 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS
130 140 150 160 170 180
190 200 210 220 230
pF1KE3 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH
190 200 210 220 230
>>XP_016865436 (OMIM: 611756) PREDICTED: ropporin-1-like (220 aa)
initn: 1352 init1: 1336 opt: 1336 Z-score: 1622.9 bits: 307.5 E(85289): 1.2e-83
Smith-Waterman score: 1336; 99.0% identity (99.5% similar) in 198 aa overlap (1-198:1-198)
10 20 30 40 50 60
pF1KE3 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDREGGPARIPFKTFSYVYRYLARLDS
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
XP_016 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS
130 140 150 160 170 180
190 200 210 220 230
pF1KE3 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH
:::::::::::::::::.
XP_016 DVSPLETESYLASLKENMIRMGAQAWLRHPTSLVAISEES
190 200 210 220
>>XP_016865435 (OMIM: 611756) PREDICTED: ropporin-1-like (232 aa)
initn: 1352 init1: 1336 opt: 1336 Z-score: 1622.5 bits: 307.5 E(85289): 1.2e-83
Smith-Waterman score: 1336; 99.0% identity (99.5% similar) in 198 aa overlap (1-198:1-198)
10 20 30 40 50 60
pF1KE3 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDREGGPARIPFKTFSYVYRYLARLDS
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
XP_016 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS
130 140 150 160 170 180
190 200 210 220 230
pF1KE3 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH
:::::::::::::::::.
XP_016 DVSPLETESYLASLKENMVLSWLSTTRIWREESLMIHRSAMLGSEHGRARRG
190 200 210 220 230
>>XP_006714566 (OMIM: 611756) PREDICTED: ropporin-1-like (257 aa)
initn: 1336 init1: 1336 opt: 1336 Z-score: 1621.8 bits: 307.5 E(85289): 1.3e-83
Smith-Waterman score: 1336; 99.0% identity (99.5% similar) in 198 aa overlap (1-198:1-198)
10 20 30 40 50 60
pF1KE3 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDREGGPARIPFKTFSYVYRYLARLDS
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
XP_006 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS
130 140 150 160 170 180
190 200 210 220 230
pF1KE3 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH
:::::::::::::::::.
XP_006 DVSPLETESYLASLKENMIRMGAQAWLRHPTSLGRHHLFASPRLFAASEKTIWNKRRVRP
190 200 210 220 230 240
>>XP_006714567 (OMIM: 611756) PREDICTED: ropporin-1-like (257 aa)
initn: 1336 init1: 1336 opt: 1336 Z-score: 1621.8 bits: 307.5 E(85289): 1.3e-83
Smith-Waterman score: 1336; 99.0% identity (99.5% similar) in 198 aa overlap (1-198:1-198)
10 20 30 40 50 60
pF1KE3 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDREGGPARIPFKTFSYVYRYLARLDS
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
XP_006 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS
130 140 150 160 170 180
190 200 210 220 230
pF1KE3 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH
:::::::::::::::::.
XP_006 DVSPLETESYLASLKENMIRMGAQAWLRHPTSLGRHHLFASPRLFAASEKTIWNKRRVRP
190 200 210 220 230 240
>>XP_011511236 (OMIM: 611757) PREDICTED: ropporin-1A iso (212 aa)
initn: 542 init1: 316 opt: 542 Z-score: 663.3 bits: 129.9 E(85289): 3.3e-30
Smith-Waterman score: 542; 39.8% identity (72.8% similar) in 206 aa overlap (15-220:10-212)
10 20 30 40 50 60
pF1KE3 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
:::::: .::.:.:::::.:: :...:.: :: :::::. ::..:
XP_011 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRER
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
: . .... :: :::.::.: . .. .: : :: . :: . :......
XP_011 SERVALCNRAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDREGGPARIPFKTFSYVYRYLARLDS
..:.:..::::.:: :: ... .:: .::.:. :..:: ::::.::...: :.:..:.
XP_011 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDG
120 130 140 150 160 170
190 200 210 220 230
pF1KE3 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH
..: .. .: ..... . .:.: ..:: : ::
XP_011 EISASHVSRMLNYMEQEVIG-PDGIITVNDFTQNPRVQLE
180 190 200 210
>>NP_001304703 (OMIM: 611757) ropporin-1A isoform a [Hom (212 aa)
initn: 542 init1: 316 opt: 542 Z-score: 663.3 bits: 129.9 E(85289): 3.3e-30
Smith-Waterman score: 542; 39.8% identity (72.8% similar) in 206 aa overlap (15-220:10-212)
10 20 30 40 50 60
pF1KE3 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
:::::: .::.:.:::::.:: :...:.: :: :::::. ::..:
NP_001 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRER
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
: . .... :: :::.::.: . .. .: : :: . :: . :......
NP_001 SERVALCNRAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDREGGPARIPFKTFSYVYRYLARLDS
..:.:..::::.:: :: ... .:: .::.:. :..:: ::::.::...: :.:..:.
NP_001 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDG
120 130 140 150 160 170
190 200 210 220 230
pF1KE3 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH
..: .. .: ..... . .:.: ..:: : ::
NP_001 EISASHVSRMLNYMEQEVIG-PDGIITVNDFTQNPRVQLE
180 190 200 210
>>XP_011511235 (OMIM: 611757) PREDICTED: ropporin-1A iso (212 aa)
initn: 542 init1: 316 opt: 542 Z-score: 663.3 bits: 129.9 E(85289): 3.3e-30
Smith-Waterman score: 542; 39.8% identity (72.8% similar) in 206 aa overlap (15-220:10-212)
10 20 30 40 50 60
pF1KE3 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
:::::: .::.:.:::::.:: :...:.: :: :::::. ::..:
XP_011 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRER
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
: . .... :: :::.::.: . .. .: : :: . :: . :......
XP_011 SERVALCNRAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDREGGPARIPFKTFSYVYRYLARLDS
..:.:..::::.:: :: ... .:: .::.:. :..:: ::::.::...: :.:..:.
XP_011 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDG
120 130 140 150 160 170
190 200 210 220 230
pF1KE3 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH
..: .. .: ..... . .:.: ..:: : ::
XP_011 EISASHVSRMLNYMEQEVIG-PDGIITVNDFTQNPRVQLE
180 190 200 210
>>NP_060048 (OMIM: 611757) ropporin-1A isoform a [Homo s (212 aa)
initn: 542 init1: 316 opt: 542 Z-score: 663.3 bits: 129.9 E(85289): 3.3e-30
Smith-Waterman score: 542; 39.8% identity (72.8% similar) in 206 aa overlap (15-220:10-212)
10 20 30 40 50 60
pF1KE3 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
:::::: .::.:.:::::.:: :...:.: :: :::::. ::..:
NP_060 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRER
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
: . .... :: :::.::.: . .. .: : :: . :: . :......
NP_060 SERVALCNRAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDREGGPARIPFKTFSYVYRYLARLDS
..:.:..::::.:: :: ... .:: .::.:. :..:: ::::.::...: :.:..:.
NP_060 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDG
120 130 140 150 160 170
190 200 210 220 230
pF1KE3 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH
..: .. .: ..... . .:.: ..:: : ::
NP_060 EISASHVSRMLNYMEQEVIG-PDGIITVNDFTQNPRVQLE
180 190 200 210
230 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 06:37:40 2016 done: Sun Nov 6 06:37:41 2016
Total Scan time: 5.540 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]