FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3803, 101 aa
  1>>>pF1KE3803 101 - 101 aa - 101 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1169+/-0.000672; mu= 10.6716+/- 0.041
 mean_var=61.3571+/-12.321, 0's: 0 Z-trim(109.7): 4  B-trim: 6 in 1/48
 Lambda= 0.163735
 statistics sampled from 11090 (11092) to 11090 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.341), width:  16
 Scan time:  1.310

The best scores are:                                      opt bits E(32554)
CCDS43762.1 ENY2 gene_id:56943|Hs108|chr8          ( 101)  643 159.5 3.2e-40
CCDS55270.1 ENY2 gene_id:56943|Hs108|chr8          (  96)  615 152.9   3e-38


>>CCDS43762.1 ENY2 gene_id:56943|Hs108|chr8               (101 aa)
 initn: 643 init1: 643 opt: 643  Z-score: 835.5  bits: 159.5 E(32554): 3.2e-40
Smith-Waterman score: 643; 100.0% identity (100.0% similar) in 101 aa overlap (1-101:1-101)

               10        20        30        40        50        60
pF1KE3 MVVSKMNKDAQMRAAINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MVVSKMNKDAQMRAAINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLE
               10        20        30        40        50        60

               70        80        90       100 
pF1KE3 HVTVDDLVAEITPKGRALVPDSVKKELLQRIRTFLAQHASL
       :::::::::::::::::::::::::::::::::::::::::
CCDS43 HVTVDDLVAEITPKGRALVPDSVKKELLQRIRTFLAQHASL
               70        80        90       100 

>>CCDS55270.1 ENY2 gene_id:56943|Hs108|chr8               (96 aa)
 initn: 615 init1: 615 opt: 615  Z-score: 800.1  bits: 152.9 E(32554): 3e-38
Smith-Waterman score: 615; 100.0% identity (100.0% similar) in 96 aa overlap (6-101:1-96)

               10        20        30        40        50        60
pF1KE3 MVVSKMNKDAQMRAAINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLE
            :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55      MNKDAQMRAAINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLE
                    10        20        30        40        50     

               70        80        90       100 
pF1KE3 HVTVDDLVAEITPKGRALVPDSVKKELLQRIRTFLAQHASL
       :::::::::::::::::::::::::::::::::::::::::
CCDS55 HVTVDDLVAEITPKGRALVPDSVKKELLQRIRTFLAQHASL
          60        70        80        90      




101 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:39:51 2016 done: Sun Nov  6 06:39:51 2016
 Total Scan time:  1.310 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]