FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3802, 74 aa
  1>>>pF1KE3802 74 - 74 aa - 74 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9091+/-0.00023; mu= 9.4341+/- 0.015
 mean_var=55.2879+/-10.657, 0's: 0 Z-trim(122.1): 3  B-trim: 21 in 1/56
 Lambda= 0.172488
 statistics sampled from 39725 (39728) to 39725 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.848), E-opt: 0.2 (0.466), width:  16
 Scan time:  3.470

The best scores are:                                      opt bits E(85289)
NP_056206 (OMIM: 614484) anaphase-promoting comple (  74)  509 133.4 3.2e-32
NP_001229303 (OMIM: 614484) anaphase-promoting com (  74)  509 133.4 3.2e-32
NP_001229304 (OMIM: 614484) anaphase-promoting com (  74)  509 133.4 3.2e-32


>>NP_056206 (OMIM: 614484) anaphase-promoting complex su  (74 aa)
 initn: 509 init1: 509 opt: 509  Z-score: 699.4  bits: 133.4 E(85289): 3.2e-32
Smith-Waterman score: 509; 100.0% identity (100.0% similar) in 74 aa overlap (1-74:1-74)

               10        20        30        40        50        60
pF1KE3 MDSEVQRDGRILDLIDDAWREDKLPYEDVAIPLNELPEPEQDNGGTTESVKEQEMKWTDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MDSEVQRDGRILDLIDDAWREDKLPYEDVAIPLNELPEPEQDNGGTTESVKEQEMKWTDL
               10        20        30        40        50        60

               70    
pF1KE3 ALQYLHENVPPIGN
       ::::::::::::::
NP_056 ALQYLHENVPPIGN
               70    

>>NP_001229303 (OMIM: 614484) anaphase-promoting complex  (74 aa)
 initn: 509 init1: 509 opt: 509  Z-score: 699.4  bits: 133.4 E(85289): 3.2e-32
Smith-Waterman score: 509; 100.0% identity (100.0% similar) in 74 aa overlap (1-74:1-74)

               10        20        30        40        50        60
pF1KE3 MDSEVQRDGRILDLIDDAWREDKLPYEDVAIPLNELPEPEQDNGGTTESVKEQEMKWTDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDSEVQRDGRILDLIDDAWREDKLPYEDVAIPLNELPEPEQDNGGTTESVKEQEMKWTDL
               10        20        30        40        50        60

               70    
pF1KE3 ALQYLHENVPPIGN
       ::::::::::::::
NP_001 ALQYLHENVPPIGN
               70    

>>NP_001229304 (OMIM: 614484) anaphase-promoting complex  (74 aa)
 initn: 509 init1: 509 opt: 509  Z-score: 699.4  bits: 133.4 E(85289): 3.2e-32
Smith-Waterman score: 509; 100.0% identity (100.0% similar) in 74 aa overlap (1-74:1-74)

               10        20        30        40        50        60
pF1KE3 MDSEVQRDGRILDLIDDAWREDKLPYEDVAIPLNELPEPEQDNGGTTESVKEQEMKWTDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDSEVQRDGRILDLIDDAWREDKLPYEDVAIPLNELPEPEQDNGGTTESVKEQEMKWTDL
               10        20        30        40        50        60

               70    
pF1KE3 ALQYLHENVPPIGN
       ::::::::::::::
NP_001 ALQYLHENVPPIGN
               70    




74 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:40:58 2016 done: Sun Nov  6 06:40:59 2016
 Total Scan time:  3.470 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]