FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3801, 69 aa
  1>>>pF1KE3801 69 - 69 aa - 69 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8725+/-0.000508; mu= 9.9684+/- 0.031
 mean_var=61.0519+/-11.988, 0's: 0 Z-trim(114.0): 12  B-trim: 0 in 0/53
 Lambda= 0.164144
 statistics sampled from 14543 (14555) to 14543 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.831), E-opt: 0.2 (0.447), width:  16
 Scan time:  1.340

The best scores are:                                      opt bits E(32554)
CCDS11545.1 GNGT2 gene_id:2793|Hs108|chr17         (  69)  448 113.1 1.4e-26
CCDS5634.1 GNG11 gene_id:2791|Hs108|chr7           (  73)  299 77.8 6.3e-16
CCDS5633.1 GNGT1 gene_id:2792|Hs108|chr7           (  74)  294 76.6 1.4e-15


>>CCDS11545.1 GNGT2 gene_id:2793|Hs108|chr17              (69 aa)
 initn: 448 init1: 448 opt: 448  Z-score: 590.5  bits: 113.1 E(32554): 1.4e-26
Smith-Waterman score: 448; 100.0% identity (100.0% similar) in 69 aa overlap (1-69:1-69)

               10        20        30        40        50        60
pF1KE3 MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPEDKNPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPEDKNPF
               10        20        30        40        50        60

                
pF1KE3 KEKGGCLIS
       :::::::::
CCDS11 KEKGGCLIS
                

>>CCDS5634.1 GNG11 gene_id:2791|Hs108|chr7                (73 aa)
 initn: 299 init1: 299 opt: 299  Z-score: 399.4  bits: 77.8 E(32554): 6.3e-16
Smith-Waterman score: 299; 65.7% identity (88.1% similar) in 67 aa overlap (3-69:7-73)

                   10        20        30        40        50      
pF1KE3     MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPED
             .:: ::. ::::::::.::::  :  .:: ..:::.:.: ..:.::..::::::
CCDS56 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
               10        20        30        40        50        60

         60         
pF1KE3 KNPFKEKGGCLIS
       ::::::::.:.::
CCDS56 KNPFKEKGSCVIS
               70   

>>CCDS5633.1 GNGT1 gene_id:2792|Hs108|chr7                (74 aa)
 initn: 292 init1: 260 opt: 294  Z-score: 392.9  bits: 76.6 E(32554): 1.4e-15
Smith-Waterman score: 294; 64.7% identity (86.8% similar) in 68 aa overlap (3-69:7-74)

                   10        20        30        40        50      
pF1KE3     MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPED
             .::.::: :::::.::::::   :. .::  .:...::: ..:.::..::::::
CCDS56 MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEVRDYVEERSGEDPLVKGIPED
               10        20        30        40        50        60

         60          
pF1KE3 KNPFKE-KGGCLIS
       :::::: ::::.::
CCDS56 KNPFKELKGGCVIS
               70    




69 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:38:40 2016 done: Sun Nov  6 06:38:41 2016
 Total Scan time:  1.340 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]