FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3754, 249 aa
  1>>>pF1KE3754 249 - 249 aa - 249 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2863+/-0.000283; mu= 16.3599+/- 0.018
 mean_var=85.3479+/-16.830, 0's: 0 Z-trim(119.9): 3  B-trim: 512 in 1/56
 Lambda= 0.138828
 statistics sampled from 34492 (34496) to 34492 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.404), width:  16
 Scan time:  5.570

The best scores are:                                      opt bits E(85289)
NP_003800 (OMIM: 602695) tumor necrosis factor lig ( 249) 1640 337.4 1.4e-92


>>NP_003800 (OMIM: 602695) tumor necrosis factor ligand   (249 aa)
 initn: 1640 init1: 1640 opt: 1640  Z-score: 1783.0  bits: 337.4 E(85289): 1.4e-92
Smith-Waterman score: 1640; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249)

               10        20        30        40        50        60
pF1KE3 MAARRSQRRRGRRGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MAARRSQRRRGRRGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 VAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GAQAGVDGTVSGWEEARINSSSPLRYNRQIGEFIVTRAGLYYLYCQVHFDEGKAVYLKLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GAQAGVDGTVSGWEEARINSSSPLRYNRQIGEFIVTRAGLYYLYCQVHFDEGKAVYLKLD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 LLVDGVLALRCLEEFSATAASSLGPQLRLCQVSGLLALRPGSSLRIRTLPWAHLKAAPFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LLVDGVLALRCLEEFSATAASSLGPQLRLCQVSGLLALRPGSSLRIRTLPWAHLKAAPFL
              190       200       210       220       230       240

                
pF1KE3 TYFGLFQVH
       :::::::::
NP_003 TYFGLFQVH
                




249 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 07:05:58 2016 done: Sun Nov  6 07:05:58 2016
 Total Scan time:  5.570 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]