FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3754, 249 aa
  1>>>pF1KE3754 249 - 249 aa - 249 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4215+/-0.000674; mu= 15.6624+/- 0.041
 mean_var=88.0094+/-17.585, 0's: 0 Z-trim(113.0): 6  B-trim: 567 in 1/50
 Lambda= 0.136713
 statistics sampled from 13691 (13693) to 13691 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.421), width:  16
 Scan time:  2.450

The best scores are:                                      opt bits E(32554)
CCDS11109.1 TNFSF12 gene_id:8742|Hs108|chr17       ( 249) 1640 332.5 1.7e-91
CCDS11108.1 TNFSF13 gene_id:407977|Hs108|chr17     ( 330) 1094 224.9 5.3e-59


>>CCDS11109.1 TNFSF12 gene_id:8742|Hs108|chr17            (249 aa)
 initn: 1640 init1: 1640 opt: 1640  Z-score: 1756.3  bits: 332.5 E(32554): 1.7e-91
Smith-Waterman score: 1640; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249)

               10        20        30        40        50        60
pF1KE3 MAARRSQRRRGRRGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAARRSQRRRGRRGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 VAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GAQAGVDGTVSGWEEARINSSSPLRYNRQIGEFIVTRAGLYYLYCQVHFDEGKAVYLKLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GAQAGVDGTVSGWEEARINSSSPLRYNRQIGEFIVTRAGLYYLYCQVHFDEGKAVYLKLD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 LLVDGVLALRCLEEFSATAASSLGPQLRLCQVSGLLALRPGSSLRIRTLPWAHLKAAPFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LLVDGVLALRCLEEFSATAASSLGPQLRLCQVSGLLALRPGSSLRIRTLPWAHLKAAPFL
              190       200       210       220       230       240

                
pF1KE3 TYFGLFQVH
       :::::::::
CCDS11 TYFGLFQVH
                

>>CCDS11108.1 TNFSF13 gene_id:407977|Hs108|chr17          (330 aa)
 initn: 1132 init1: 1094 opt: 1094  Z-score: 1172.7  bits: 224.9 E(32554): 5.3e-59
Smith-Waterman score: 1094; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166)

               10        20        30        40        50        60
pF1KE3 MAARRSQRRRGRRGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAARRSQRRRGRRGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 VAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GAQAGVDGTVSGWEEARINSSSPLRYNRQIGEFIVTRAGLYYLYCQVHFDEGKAVYLKLD
       ::::::::::::::::::::::::::::::::::::::::::::::              
CCDS11 GAQAGVDGTVSGWEEARINSSSPLRYNRQIGEFIVTRAGLYYLYCQSSDALEAWENGERS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 LLVDGVLALRCLEEFSATAASSLGPQLRLCQVSGLLALRPGSSLRIRTLPWAHLKAAPFL
                                                                   
CCDS11 RKRRAVLTQKQKKQHSVLHLVPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDA
              190       200       210       220       230       240




249 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 07:05:57 2016 done: Sun Nov  6 07:05:57 2016
 Total Scan time:  2.450 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]