Result of FASTA (ccds) for
pFN21AE3751
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3751, 1469 aa
1>>>pF1KE3751 1469 - 1469 aa - 1469 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.5248+/-0.00106; mu= -8.3573+/- 0.063
mean_var=415.6768+/-84.973, 0's: 0 Z-trim(115.2): 75 B-trim: 144 in 1/53
Lambda= 0.062907
statistics sampled from 15665 (15737) to 15665 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.483), width: 16
Scan time: 6.030
The best scores are: opt bits E(32554)
CCDS6998.1 SNAPC4 gene_id:6621|Hs108|chr9 (1469) 9852 909.5 0
>>CCDS6998.1 SNAPC4 gene_id:6621|Hs108|chr9 (1469 aa)
initn: 9852 init1: 9852 opt: 9852 Z-score: 4847.2 bits: 909.5 E(32554): 0
Smith-Waterman score: 9852; 100.0% identity (100.0% similar) in 1469 aa overlap (1-1469:1-1469)
10 20 30 40 50 60
pF1KE3 MDVDAEREKITQEIKELERILDPGSSGSHVEISESSLESDSEADSLPSEDLDPADPPISE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MDVDAEREKITQEIKELERILDPGSSGSHVEISESSLESDSEADSLPSEDLDPADPPISE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EERWGEASNDEDDPKDKTLPEDPETCLQLNMVYQEVIQEKLAEANLLLAQNREQQEELMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 EERWGEASNDEDDPKDKTLPEDPETCLQLNMVYQEVIQEKLAEANLLLAQNREQQEELMR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 DLAGSKGTKVKDGKSLPPSTYMGHFMKPYFKDKVTGVGPPANEDTREKAAQGIKAFEELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 DLAGSKGTKVKDGKSLPPSTYMGHFMKPYFKDKVTGVGPPANEDTREKAAQGIKAFEELL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VTKWKNWEKALLRKSVVSDRLQRLLQPKLLKLEYLHQKQSKVSSELERQALEKQGREAEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 VTKWKNWEKALLRKSVVSDRLQRLLQPKLLKLEYLHQKQSKVSSELERQALEKQGREAEK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EIQDINQLPEEALLGNRLDSHDWEKISNINFEGSRSAEEIRKFWQNSEHPSINKQEWSRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 EIQDINQLPEEALLGNRLDSHDWEKISNINFEGSRSAEEIRKFWQNSEHPSINKQEWSRE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 EEERLQAIAAAHGHLEWQKIAEELGTSRSAFQCLQKFQQHNKALKRKEWTEEEDRMLTQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 EEERLQAIAAAHGHLEWQKIAEELGTSRSAFQCLQKFQQHNKALKRKEWTEEEDRMLTQL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 VQEMRVGSHIPYRRIVYYMEGRDSMQLIYRWTKSLDPGLKKGYWAPEEDAKLLQAVAKYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 VQEMRVGSHIPYRRIVYYMEGRDSMQLIYRWTKSLDPGLKKGYWAPEEDAKLLQAVAKYG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 EQDWFKIREEVPGRSDAQCRDRYLRRLHFSLKKGRWNLKEEEQLIELIEKYGVGHWAKIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 EQDWFKIREEVPGRSDAQCRDRYLRRLHFSLKKGRWNLKEEEQLIELIEKYGVGHWAKIA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 SELPHRSGSQCLSKWKIMMGKKQGLRRRRRRARHSVRWSSTSSSGSSSGSSGGSSSSSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SELPHRSGSQCLSKWKIMMGKKQGLRRRRRRARHSVRWSSTSSSGSSSGSSGGSSSSSSS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 SSEEDEPEQAQAGEGDRALLSPQYMVPDMDLWVPARQSTSQPWRGGAGAWLGGPAASLSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SSEEDEPEQAQAGEGDRALLSPQYMVPDMDLWVPARQSTSQPWRGGAGAWLGGPAASLSP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 PKGSSASQGGSKEASTTAAAPGEETSPVQVPARAHGPVPRSAQASHSADTRPAGAEKQAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 PKGSSASQGGSKEASTTAAAPGEETSPVQVPARAHGPVPRSAQASHSADTRPAGAEKQAL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE3 EGGRRLLTVPVETVLRVLRANTAARSCTQKEQLRQPPLPTSSPGVSSGDSVARSHVQWLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 EGGRRLLTVPVETVLRVLRANTAARSCTQKEQLRQPPLPTSSPGVSSGDSVARSHVQWLR
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE3 HRATQSGQRRWRHALHRRLLNRRLLLAVTPWVGDVVVPCTQASQRPAVVQTQADGLREQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 HRATQSGQRRWRHALHRRLLNRRLLLAVTPWVGDVVVPCTQASQRPAVVQTQADGLREQL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE3 QQARLASTPVFTLFTQLFHIDTAGCLEVVRERKALPPRLPQAGARDPPVHLLQASSSAQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 QQARLASTPVFTLFTQLFHIDTAGCLEVVRERKALPPRLPQAGARDPPVHLLQASSSAQS
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE3 TPGHLFPNVPAQEASKSASHKGSRRLASSRVERTLPQASLLASTGPRPKPKTVSELLQEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 TPGHLFPNVPAQEASKSASHKGSRRLASSRVERTLPQASLLASTGPRPKPKTVSELLQEK
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE3 RLQEARAREATRGPVVLPSQLLVSSSVILQPPLPHTPHGRPAPGPTVLNVPLSGPGAPAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 RLQEARAREATRGPVVLPSQLLVSSSVILQPPLPHTPHGRPAPGPTVLNVPLSGPGAPAA
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KE3 AKPGTSGSWQEAGTSAKDKRLSTMQALPLAPVFSEAEGTAPAASQAPALGPGQISVSCPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 AKPGTSGSWQEAGTSAKDKRLSTMQALPLAPVFSEAEGTAPAASQAPALGPGQISVSCPE
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KE3 SGLGQSQAPAASRKQGLPEAPPFLPAAPSPTPLPVQPLSLTHIGGPHVATSVPLPVTWVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SGLGQSQAPAASRKQGLPEAPPFLPAAPSPTPLPVQPLSLTHIGGPHVATSVPLPVTWVL
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KE3 TAQGLLPVPVPAVVSLPRPAGTPGPAGLLATLLPPLTETRAAQGPRAPALSSSWQPPANM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 TAQGLLPVPVPAVVSLPRPAGTPGPAGLLATLLPPLTETRAAQGPRAPALSSSWQPPANM
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KE3 NREPEPSCRTDTPAPPTHALSQSPAEADGSVAFVPGEAQVAREIPEPRTSSHADPPEAEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 NREPEPSCRTDTPAPPTHALSQSPAEADGSVAFVPGEAQVAREIPEPRTSSHADPPEAEP
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KE3 PWSGRLPAFGGVIPATEPRGTPGSPSGTQEPRGPLGLEKLPLRQPGPEKGALDLEKPPLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 PWSGRLPAFGGVIPATEPRGTPGSPSGTQEPRGPLGLEKLPLRQPGPEKGALDLEKPPLP
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KE3 QPGPEKGALDLGLLSQEGEAATQQWLGGQRGVRVPLLGSRLPYQPPALCSLRALSGLLLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 QPGPEKGALDLGLLSQEGEAATQQWLGGQRGVRVPLLGSRLPYQPPALCSLRALSGLLLH
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KE3 KKALEHKATSLVVGGEAERPAGALQASLGLVRGQLQDNPAYLLLRARFLAAFTLPALLAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 KKALEHKATSLVVGGEAERPAGALQASLGLVRGQLQDNPAYLLLRARFLAAFTLPALLAT
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KE3 LAPQGVRTTLSVPSRVGSESEDEDLLSELELADRDGQPGCTTATCPIQGAPDSGKCSASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LAPQGVRTTLSVPSRVGSESEDEDLLSELELADRDGQPGCTTATCPIQGAPDSGKCSASS
1390 1400 1410 1420 1430 1440
1450 1460
pF1KE3 CLDTSNDPDDLDVLRTRHARHTRKRRRLV
:::::::::::::::::::::::::::::
CCDS69 CLDTSNDPDDLDVLRTRHARHTRKRRRLV
1450 1460
1469 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 07:40:57 2016 done: Sun Nov 6 07:40:58 2016
Total Scan time: 6.030 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]