Result of FASTA (ccds) for
pFN21AE3730
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3730, 184 aa
1>>>pF1KE3730 184 - 184 aa - 184 aa
Library: human.CCDS.faa
18921897 residues in 33420 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6977+/-0.000754; mu= 7.8635+/- 0.046
mean_var=114.3746+/-22.165, 0's: 0 Z-trim(111.8): 29 B-trim: 44 in 1/52
Lambda= 0.119925
statistics sampled from 12846 (12872) to 12846 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.385), width: 16
Scan time: 1.060
The best scores are: opt bits E(33420)
CCDS55249.1 TPD52 gene_id:7163|Hs109|chr8 ( 184) 1123 204.1 4e-53
CCDS34912.1 TPD52 gene_id:7163|Hs109|chr8 ( 224) 1080 196.8 8.1e-51
CCDS47879.1 TPD52 gene_id:7163|Hs109|chr8 ( 207) 781 145.0 2.8e-35
CCDS75758.1 TPD52 gene_id:7163|Hs109|chr8 ( 233) 744 138.6 2.6e-33
CCDS75759.1 TPD52 gene_id:7163|Hs109|chr8 ( 247) 738 137.6 5.7e-33
CCDS75757.1 TPD52 gene_id:7163|Hs109|chr8 ( 238) 729 136.1 1.6e-32
CCDS75513.1 TPD52L1 gene_id:7164|Hs109|chr6 ( 191) 656 123.4 8.6e-29
CCDS58785.1 TPD52L2 gene_id:7165|Hs109|chr20 ( 163) 559 106.5 8.5e-24
CCDS13541.1 TPD52L2 gene_id:7165|Hs109|chr20 ( 186) 557 106.2 1.2e-23
CCDS34528.1 TPD52L1 gene_id:7164|Hs109|chr6 ( 131) 467 90.6 4.4e-19
CCDS34527.1 TPD52L1 gene_id:7164|Hs109|chr6 ( 144) 467 90.6 4.8e-19
CCDS83122.1 TPD52L1 gene_id:7164|Hs109|chr6 ( 209) 468 90.9 5.7e-19
CCDS5130.1 TPD52L1 gene_id:7164|Hs109|chr6 ( 204) 467 90.7 6.3e-19
CCDS13543.1 TPD52L2 gene_id:7165|Hs109|chr20 ( 209) 459 89.3 1.7e-18
CCDS13545.1 TPD52L2 gene_id:7165|Hs109|chr20 ( 200) 445 86.9 8.7e-18
CCDS75514.1 TPD52L1 gene_id:7164|Hs109|chr6 ( 102) 409 80.4 3.8e-16
CCDS43502.1 TPD52L1 gene_id:7164|Hs109|chr6 ( 175) 409 80.6 5.9e-16
CCDS13540.1 TPD52L2 gene_id:7165|Hs109|chr20 ( 206) 333 67.5 6.1e-12
CCDS13544.1 TPD52L2 gene_id:7165|Hs109|chr20 ( 220) 333 67.5 6.4e-12
CCDS74752.1 TPD52L2 gene_id:7165|Hs109|chr20 ( 222) 333 67.5 6.5e-12
CCDS13542.1 TPD52L2 gene_id:7165|Hs109|chr20 ( 229) 333 67.5 6.6e-12
>>CCDS55249.1 TPD52 gene_id:7163|Hs109|chr8 (184 aa)
initn: 1123 init1: 1123 opt: 1123 Z-score: 1067.5 bits: 204.1 E(33420): 4e-53
Smith-Waterman score: 1123; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184)
10 20 30 40 50 60
pF1KE3 MDRGEQGLLRTDPVPEEGEDVAATISATETLSEEEQEELRRELAKVEEEIQTLSQVLAAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MDRGEQGLLRTDPVPEEGEDVAATISATETLSEEEQEELRRELAKVEEEIQTLSQVLAAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ITKKLEDVKNSPTFKSFEEKVENLKSKVGGTKPAGGDFGEVLNSAANASATTTEPLPEKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ITKKLEDVKNSPTFKSFEEKVENLKSKVGGTKPAGGDFGEVLNSAANASATTTEPLPEKT
130 140 150 160 170 180
pF1KE3 QESL
::::
CCDS55 QESL
>>CCDS34912.1 TPD52 gene_id:7163|Hs109|chr8 (224 aa)
initn: 1080 init1: 1080 opt: 1080 Z-score: 1026.0 bits: 196.8 E(33420): 8.1e-51
Smith-Waterman score: 1080; 100.0% identity (100.0% similar) in 178 aa overlap (7-184:47-224)
10 20 30
pF1KE3 MDRGEQGLLRTDPVPEEGEDVAATISATETLSEEEQ
::::::::::::::::::::::::::::::
CCDS34 DFDAGVNKSYLYLSPSGNSSPPGSPTLQKFGLLRTDPVPEEGEDVAATISATETLSEEEQ
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE3 EELRRELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EELRRELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAY
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE3 KKTSETLSQAGQKASAAFSSVGSVITKKLEDVKNSPTFKSFEEKVENLKSKVGGTKPAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KKTSETLSQAGQKASAAFSSVGSVITKKLEDVKNSPTFKSFEEKVENLKSKVGGTKPAGG
140 150 160 170 180 190
160 170 180
pF1KE3 DFGEVLNSAANASATTTEPLPEKTQESL
::::::::::::::::::::::::::::
CCDS34 DFGEVLNSAANASATTTEPLPEKTQESL
200 210 220
>>CCDS47879.1 TPD52 gene_id:7163|Hs109|chr8 (207 aa)
initn: 781 init1: 781 opt: 781 Z-score: 747.0 bits: 145.0 E(33420): 2.8e-35
Smith-Waterman score: 1067; 88.9% identity (88.9% similar) in 207 aa overlap (1-184:1-207)
10 20 30 40 50 60
pF1KE3 MDRGEQGLLRTDPVPEEGEDVAATISATETLSEEEQEELRRELAKVEEEIQTLSQVLAAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MDRGEQGLLRTDPVPEEGEDVAATISATETLSEEEQEELRRELAKVEEEIQTLSQVLAAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSV
70 80 90 100 110 120
130 140 150
pF1KE3 ITKKLEDVK-----------------------NSPTFKSFEEKVENLKSKVGGTKPAGGD
::::::::: ::::::::::::::::::::::::::::
CCDS47 ITKKLEDVKLQAFSHSFSIRSIQHSISMPAMRNSPTFKSFEEKVENLKSKVGGTKPAGGD
130 140 150 160 170 180
160 170 180
pF1KE3 FGEVLNSAANASATTTEPLPEKTQESL
:::::::::::::::::::::::::::
CCDS47 FGEVLNSAANASATTTEPLPEKTQESL
190 200
>>CCDS75758.1 TPD52 gene_id:7163|Hs109|chr8 (233 aa)
initn: 738 init1: 738 opt: 744 Z-score: 711.6 bits: 138.6 E(33420): 2.6e-33
Smith-Waterman score: 1052; 95.2% identity (95.2% similar) in 187 aa overlap (7-184:47-233)
10 20 30
pF1KE3 MDRGEQGLLRTDPVPEEGEDVAATISATETLSEEEQ
::::::::::::::::::::::::::::::
CCDS75 DFDAGVNKSYLYLSPSGNSSPPGSPTLQKFGLLRTDPVPEEGEDVAATISATETLSEEEQ
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE3 EELRRELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EELRRELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAY
80 90 100 110 120 130
100 110 120 130 140
pF1KE3 KKTSETLSQAGQKASAAFSSVGSVITKKLEDVK---------NSPTFKSFEEKVENLKSK
::::::::::::::::::::::::::::::::: ::::::::::::::::::
CCDS75 KKTSETLSQAGQKASAAFSSVGSVITKKLEDVKLQAFSHSFRNSPTFKSFEEKVENLKSK
140 150 160 170 180 190
150 160 170 180
pF1KE3 VGGTKPAGGDFGEVLNSAANASATTTEPLPEKTQESL
:::::::::::::::::::::::::::::::::::::
CCDS75 VGGTKPAGGDFGEVLNSAANASATTTEPLPEKTQESL
200 210 220 230
>>CCDS75759.1 TPD52 gene_id:7163|Hs109|chr8 (247 aa)
initn: 738 init1: 738 opt: 738 Z-score: 705.7 bits: 137.6 E(33420): 5.7e-33
Smith-Waterman score: 1024; 88.6% identity (88.6% similar) in 201 aa overlap (7-184:47-247)
10 20 30
pF1KE3 MDRGEQGLLRTDPVPEEGEDVAATISATETLSEEEQ
::::::::::::::::::::::::::::::
CCDS75 DFDAGVNKSYLYLSPSGNSSPPGSPTLQKFGLLRTDPVPEEGEDVAATISATETLSEEEQ
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE3 EELRRELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EELRRELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAY
80 90 100 110 120 130
100 110 120 130
pF1KE3 KKTSETLSQAGQKASAAFSSVGSVITKKLEDVK-----------------------NSPT
::::::::::::::::::::::::::::::::: ::::
CCDS75 KKTSETLSQAGQKASAAFSSVGSVITKKLEDVKLQAFSHSFSIRSIQHSISMPAMRNSPT
140 150 160 170 180 190
140 150 160 170 180
pF1KE3 FKSFEEKVENLKSKVGGTKPAGGDFGEVLNSAANASATTTEPLPEKTQESL
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 FKSFEEKVENLKSKVGGTKPAGGDFGEVLNSAANASATTTEPLPEKTQESL
200 210 220 230 240
>>CCDS75757.1 TPD52 gene_id:7163|Hs109|chr8 (238 aa)
initn: 729 init1: 729 opt: 729 Z-score: 697.5 bits: 136.1 E(33420): 1.6e-32
Smith-Waterman score: 1039; 92.2% identity (92.7% similar) in 192 aa overlap (7-184:47-238)
10 20 30
pF1KE3 MDRGEQGLLRTDPVPEEGEDVAATISATETLSEEEQ
::::::::::::::::::::::::::::::
CCDS75 DFDAGVNKSYLYLSPSGNSSPPGSPTLQKFGLLRTDPVPEEGEDVAATISATETLSEEEQ
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE3 EELRRELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EELRRELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAY
80 90 100 110 120 130
100 110 120 130 140
pF1KE3 KKTSETLSQAGQKASAAFSSVGSVITKKLEDV--------------KNSPTFKSFEEKVE
:::::::::::::::::::::::::::::::: .:::::::::::::
CCDS75 KKTSETLSQAGQKASAAFSSVGSVITKKLEDVNIRSIQHSISMPAMRNSPTFKSFEEKVE
140 150 160 170 180 190
150 160 170 180
pF1KE3 NLKSKVGGTKPAGGDFGEVLNSAANASATTTEPLPEKTQESL
::::::::::::::::::::::::::::::::::::::::::
CCDS75 NLKSKVGGTKPAGGDFGEVLNSAANASATTTEPLPEKTQESL
200 210 220 230
>>CCDS75513.1 TPD52L1 gene_id:7164|Hs109|chr6 (191 aa)
initn: 648 init1: 543 opt: 656 Z-score: 630.6 bits: 123.4 E(33420): 8.6e-29
Smith-Waterman score: 656; 57.0% identity (83.9% similar) in 186 aa overlap (1-182:1-186)
10 20 30 40 50 60
pF1KE3 MDRGEQGLLRTDPVPEEGEDVAATISATETLSEEEQEELRRELAKVEEEIQTLSQVLAAK
:. ::::.:.:. ::..:. . . :::::.:::. ::...:.:: :: :::.::
CCDS75 MEAQAQGLLETEPLQGTDEDAVASADFSSMLSEEEKEELKAELVQLEDEITTLRQVLSAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSV
:.::.:::.:::.: ..:::::..:.:.:. .:.::::: ::::.:::::.::::.::..
CCDS75 ERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTA
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 ITKKLEDVKNSPTFKSFEEKVE----NLKSKVGGTKPAGGDFGEVLNSAANASATTTEPL
:.::. :..::::::::::.:: .::.:::::.: ::.: :::.:.:.::: .
CCDS75 ISKKFGDMRNSPTFKSFEERVETTVTSLKTKVGGTNPNGGSFEEVLSSTAHASAQSLAGG
130 140 150 160 170 180
180
pF1KE3 PEKTQESL
..:.:
CCDS75 SRRTKEEELQC
190
>>CCDS58785.1 TPD52L2 gene_id:7165|Hs109|chr20 (163 aa)
initn: 617 init1: 536 opt: 559 Z-score: 540.9 bits: 106.5 E(33420): 8.5e-24
Smith-Waterman score: 559; 56.9% identity (83.8% similar) in 160 aa overlap (18-177:5-162)
10 20 30 40 50 60
pF1KE3 MDRGEQGLLRTDPVPEEGEDVAATISATETLSEEEQEELRRELAKVEEEIQTLSQVLAAK
:. ::: :.: :.: :.:::: ::.:::::: :: ::::::
CCDS58 MDSAGQGVAARTPAVEGLTEAEEEELRAELTKVEEEIVTLRQVLAAK
10 20 30 40
70 80 90 100 110 120
pF1KE3 EKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSV
:.: .:.::.::...: :::::....:.:: ..::::::.:::::::::.:::.:.:::.
CCDS58 ERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSSAYKKTQETLSQAGQKTSAALSTVGSA
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE3 ITKKLEDVKNSPTFKSFEEKVENLKSKVGGTKPAGGDFGEVLNSAANASATTTEPLPEKT
:..:: :..:: ::::::..: ..:::: : . :.: .. .::.... ..: :
CCDS58 ISRKLGDMRNSATFKSFEDRVGTIKSKVVGDRENGSD--NLPSSAGSGDKPLSDPAPF
110 120 130 140 150 160
pF1KE3 QESL
>>CCDS13541.1 TPD52L2 gene_id:7165|Hs109|chr20 (186 aa)
initn: 597 init1: 536 opt: 557 Z-score: 538.2 bits: 106.2 E(33420): 1.2e-23
Smith-Waterman score: 557; 53.1% identity (80.4% similar) in 179 aa overlap (1-177:10-185)
10 20 30 40
pF1KE3 MDRGEQGLLRTDPVPEEGED--VAATISATETLSEEEQEELRRELAKVEEE
.. ..::: .: . . : ::: :.: :.: :.:::: ::.:::::
CCDS13 MDSAGQDINLNSPNKGLL-SDSMTDVPVDTGVAARTPAVEGLTEAEEEELRAELTKVEEE
10 20 30 40 50
50 60 70 80 90 100
pF1KE3 IQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQK
: :: :::::::.: .:.::.::...: :::::....:.:: ..::::::.:::::::::
CCDS13 IVTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSSAYKKTQETLSQAGQK
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE3 ASAAFSSVGSVITKKLEDVKNSPTFKSFEEKVENLKSKVGGTKPAGGDFGEVLNSAANAS
.:::.:.:::.:..:: :..:: ::::::..: ..:::: : . :.: .. .::....
CCDS13 TSAALSTVGSAISRKLGDMRNSATFKSFEDRVGTIKSKVVGDRENGSD--NLPSSAGSGD
120 130 140 150 160 170
170 180
pF1KE3 ATTTEPLPEKTQESL
..: :
CCDS13 KPLSDPAPF
180
>>CCDS34528.1 TPD52L1 gene_id:7164|Hs109|chr6 (131 aa)
initn: 482 init1: 463 opt: 467 Z-score: 456.2 bits: 90.6 E(33420): 4.4e-19
Smith-Waterman score: 467; 56.6% identity (86.0% similar) in 129 aa overlap (1-129:1-129)
10 20 30 40 50 60
pF1KE3 MDRGEQGLLRTDPVPEEGEDVAATISATETLSEEEQEELRRELAKVEEEIQTLSQVLAAK
:. ::::.:.:. ::..:. . . :::::.:::. ::...:.:: :: :::.::
CCDS34 MEAQAQGLLETEPLQGTDEDAVASADFSSMLSEEEKEELKAELVQLEDEITTLRQVLSAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSV
:.::.:::.:::.: ..:::::..:.:.:. .:.::::: ::::.:::::.::::.::..
CCDS34 ERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ITKKLEDVKNSPTFKSFEEKVENLKSKVGGTKPAGGDFGEVLNSAANASATTTEPLPEKT
:.::. :..
CCDS34 ISKKFGDMRRK
130
184 residues in 1 query sequences
18921897 residues in 33420 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Aug 16 14:36:19 2021 done: Mon Aug 16 14:36:19 2021
Total Scan time: 1.060 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]