Result of FASTA (omim) for
pFN21AE3709
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3709, 212 aa
1>>>pF1KE3709 212 - 212 aa - 212 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1211+/-0.000341; mu= 14.2799+/- 0.021
mean_var=56.5625+/-11.208, 0's: 0 Z-trim(114.5): 20 B-trim: 53 in 1/52
Lambda= 0.170534
statistics sampled from 24291 (24311) to 24291 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.285), width: 16
Scan time: 6.110
The best scores are: opt bits E(85289)
NP_001304703 (OMIM: 611757) ropporin-1A isoform a ( 212) 1345 338.7 4.1e-93
XP_011511235 (OMIM: 611757) PREDICTED: ropporin-1A ( 212) 1345 338.7 4.1e-93
XP_011511236 (OMIM: 611757) PREDICTED: ropporin-1A ( 212) 1345 338.7 4.1e-93
NP_060048 (OMIM: 611757) ropporin-1A isoform a [Ho ( 212) 1345 338.7 4.1e-93
NP_001304704 (OMIM: 611757) ropporin-1A isoform b ( 120) 761 195.0 4.4e-50
NP_114122 (OMIM: 611756) ropporin-1-like protein [ ( 230) 521 136.0 4.7e-32
NP_001188395 (OMIM: 611756) ropporin-1-like protei ( 230) 521 136.0 4.7e-32
XP_016865436 (OMIM: 611756) PREDICTED: ropporin-1- ( 220) 502 131.3 1.1e-30
XP_006714567 (OMIM: 611756) PREDICTED: ropporin-1- ( 257) 502 131.4 1.3e-30
XP_006714566 (OMIM: 611756) PREDICTED: ropporin-1- ( 257) 502 131.4 1.3e-30
XP_016865435 (OMIM: 611756) PREDICTED: ropporin-1- ( 232) 501 131.1 1.4e-30
>>NP_001304703 (OMIM: 611757) ropporin-1A isoform a [Hom (212 aa)
initn: 1345 init1: 1345 opt: 1345 Z-score: 1792.7 bits: 338.7 E(85289): 4.1e-93
Smith-Waterman score: 1345; 95.8% identity (98.1% similar) in 212 aa overlap (1-212:1-212)
10 20 30 40 50 60
pF1KE3 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRERSERVA
:::::::::::::::::::::::::::.::::::::.:::::::::::::::::::::::
NP_001 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRERSERVA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LCNWAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LCNRAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 KFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDGEICASHV
:::::::::::::::::::::::::::::::: ::::::::::::::::.::::: ::::
NP_001 KFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHV
130 140 150 160 170 180
190 200 210
pF1KE3 SRMLNYIEQEVIGPDGLITVNDFTQNPRVWLE
::::::.:::::::::.:::::::::::: ::
NP_001 SRMLNYMEQEVIGPDGIITVNDFTQNPRVQLE
190 200 210
>>XP_011511235 (OMIM: 611757) PREDICTED: ropporin-1A iso (212 aa)
initn: 1345 init1: 1345 opt: 1345 Z-score: 1792.7 bits: 338.7 E(85289): 4.1e-93
Smith-Waterman score: 1345; 95.8% identity (98.1% similar) in 212 aa overlap (1-212:1-212)
10 20 30 40 50 60
pF1KE3 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRERSERVA
:::::::::::::::::::::::::::.::::::::.:::::::::::::::::::::::
XP_011 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRERSERVA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LCNWAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LCNRAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 KFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDGEICASHV
:::::::::::::::::::::::::::::::: ::::::::::::::::.::::: ::::
XP_011 KFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHV
130 140 150 160 170 180
190 200 210
pF1KE3 SRMLNYIEQEVIGPDGLITVNDFTQNPRVWLE
::::::.:::::::::.:::::::::::: ::
XP_011 SRMLNYMEQEVIGPDGIITVNDFTQNPRVQLE
190 200 210
>>XP_011511236 (OMIM: 611757) PREDICTED: ropporin-1A iso (212 aa)
initn: 1345 init1: 1345 opt: 1345 Z-score: 1792.7 bits: 338.7 E(85289): 4.1e-93
Smith-Waterman score: 1345; 95.8% identity (98.1% similar) in 212 aa overlap (1-212:1-212)
10 20 30 40 50 60
pF1KE3 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRERSERVA
:::::::::::::::::::::::::::.::::::::.:::::::::::::::::::::::
XP_011 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRERSERVA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LCNWAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LCNRAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 KFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDGEICASHV
:::::::::::::::::::::::::::::::: ::::::::::::::::.::::: ::::
XP_011 KFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHV
130 140 150 160 170 180
190 200 210
pF1KE3 SRMLNYIEQEVIGPDGLITVNDFTQNPRVWLE
::::::.:::::::::.:::::::::::: ::
XP_011 SRMLNYMEQEVIGPDGIITVNDFTQNPRVQLE
190 200 210
>>NP_060048 (OMIM: 611757) ropporin-1A isoform a [Homo s (212 aa)
initn: 1345 init1: 1345 opt: 1345 Z-score: 1792.7 bits: 338.7 E(85289): 4.1e-93
Smith-Waterman score: 1345; 95.8% identity (98.1% similar) in 212 aa overlap (1-212:1-212)
10 20 30 40 50 60
pF1KE3 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRERSERVA
:::::::::::::::::::::::::::.::::::::.:::::::::::::::::::::::
NP_060 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRERSERVA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LCNWAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LCNRAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 KFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDGEICASHV
:::::::::::::::::::::::::::::::: ::::::::::::::::.::::: ::::
NP_060 KFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHV
130 140 150 160 170 180
190 200 210
pF1KE3 SRMLNYIEQEVIGPDGLITVNDFTQNPRVWLE
::::::.:::::::::.:::::::::::: ::
NP_060 SRMLNYMEQEVIGPDGIITVNDFTQNPRVQLE
190 200 210
>>NP_001304704 (OMIM: 611757) ropporin-1A isoform b [Hom (120 aa)
initn: 761 init1: 761 opt: 761 Z-score: 1020.1 bits: 195.0 E(85289): 4.4e-50
Smith-Waterman score: 761; 95.0% identity (97.5% similar) in 120 aa overlap (93-212:1-120)
70 80 90 100 110 120
pF1KE3 NWAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWLKF
::::::::::::::::::::::::::::::
NP_001 MWKVVNLPTDLFNSVMNVGRFTEEIEWLKF
10 20 30
130 140 150 160 170 180
pF1KE3 LALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDGEICASHVSR
:::::::::::::::::::::::::::::: ::::::::::::::::.::::: ::::::
NP_001 LALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHVSR
40 50 60 70 80 90
190 200 210
pF1KE3 MLNYIEQEVIGPDGLITVNDFTQNPRVWLE
::::.:::::::::.:::::::::::: ::
NP_001 MLNYMEQEVIGPDGIITVNDFTQNPRVQLE
100 110 120
>>NP_114122 (OMIM: 611756) ropporin-1-like protein [Homo (230 aa)
initn: 529 init1: 303 opt: 521 Z-score: 696.5 bits: 136.0 E(85289): 4.7e-32
Smith-Waterman score: 521; 39.3% identity (71.4% similar) in 206 aa overlap (10-212:15-220)
10 20 30 40 50
pF1KE3 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRER
:::::: .::.:.:::::.:: :...:.: :: :::::. ::..:
NP_114 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 SERVALCNWAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF
: . . .. :: :::.::.: . .. .: : :: . :: . :......
NP_114 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDG
..:.:..::::.:: :: ... .:: .::.:. : .:: ::::.::...: :.:..:.
NP_114 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS
130 140 150 160 170 180
180 190 200 210
pF1KE3 EICASHVSRMLNYIEQEVIG-PDGLITVNDFTQNPRVWLE
.. .. .: ..... . .:.: ..:: : ::
NP_114 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH
190 200 210 220 230
>>NP_001188395 (OMIM: 611756) ropporin-1-like protein [H (230 aa)
initn: 529 init1: 303 opt: 521 Z-score: 696.5 bits: 136.0 E(85289): 4.7e-32
Smith-Waterman score: 521; 39.3% identity (71.4% similar) in 206 aa overlap (10-212:15-220)
10 20 30 40 50
pF1KE3 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRER
:::::: .::.:.:::::.:: :...:.: :: :::::. ::..:
NP_001 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 SERVALCNWAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF
: . . .. :: :::.::.: . .. .: : :: . :: . :......
NP_001 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDG
..:.:..::::.:: :: ... .:: .::.:. : .:: ::::.::...: :.:..:.
NP_001 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS
130 140 150 160 170 180
180 190 200 210
pF1KE3 EICASHVSRMLNYIEQEVIG-PDGLITVNDFTQNPRVWLE
.. .. .: ..... . .:.: ..:: : ::
NP_001 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH
190 200 210 220 230
>>XP_016865436 (OMIM: 611756) PREDICTED: ropporin-1-like (220 aa)
initn: 505 init1: 303 opt: 502 Z-score: 671.6 bits: 131.3 E(85289): 1.1e-30
Smith-Waterman score: 502; 40.5% identity (73.5% similar) in 185 aa overlap (10-192:15-199)
10 20 30 40 50
pF1KE3 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRER
:::::: .::.:.:::::.:: :...:.: :: :::::. ::..:
XP_016 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 SERVALCNWAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF
: . . .. :: :::.::.: . .. .: : :: . :: . :......
XP_016 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDG
..:.:..::::.:: :: ... .:: .::.:. : .:: ::::.::...: :.:..:.
XP_016 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS
130 140 150 160 170 180
180 190 200 210
pF1KE3 EICASHVSRMLNYIEQEVIGPDGLITVNDFTQNPRVWLE
.. .. .: .....:
XP_016 DVSPLETESYLASLKENMIRMGAQAWLRHPTSLVAISEES
190 200 210 220
>>XP_006714567 (OMIM: 611756) PREDICTED: ropporin-1-like (257 aa)
initn: 505 init1: 303 opt: 502 Z-score: 670.5 bits: 131.4 E(85289): 1.3e-30
Smith-Waterman score: 502; 40.5% identity (73.5% similar) in 185 aa overlap (10-192:15-199)
10 20 30 40 50
pF1KE3 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRER
:::::: .::.:.:::::.:: :...:.: :: :::::. ::..:
XP_006 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 SERVALCNWAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF
: . . .. :: :::.::.: . .. .: : :: . :: . :......
XP_006 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDG
..:.:..::::.:: :: ... .:: .::.:. : .:: ::::.::...: :.:..:.
XP_006 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS
130 140 150 160 170 180
180 190 200 210
pF1KE3 EICASHVSRMLNYIEQEVIGPDGLITVNDFTQNPRVWLE
.. .. .: .....:
XP_006 DVSPLETESYLASLKENMIRMGAQAWLRHPTSLGRHHLFASPRLFAASEKTIWNKRRVRP
190 200 210 220 230 240
>>XP_006714566 (OMIM: 611756) PREDICTED: ropporin-1-like (257 aa)
initn: 505 init1: 303 opt: 502 Z-score: 670.5 bits: 131.4 E(85289): 1.3e-30
Smith-Waterman score: 502; 40.5% identity (73.5% similar) in 185 aa overlap (10-192:15-199)
10 20 30 40 50
pF1KE3 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRER
:::::: .::.:.:::::.:: :...:.: :: :::::. ::..:
XP_006 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 SERVALCNWAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF
: . . .. :: :::.::.: . .. .: : :: . :: . :......
XP_006 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDG
..:.:..::::.:: :: ... .:: .::.:. : .:: ::::.::...: :.:..:.
XP_006 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS
130 140 150 160 170 180
180 190 200 210
pF1KE3 EICASHVSRMLNYIEQEVIGPDGLITVNDFTQNPRVWLE
.. .. .: .....:
XP_006 DVSPLETESYLASLKENMIRMGAQAWLRHPTSLGRHHLFASPRLFAASEKTIWNKRRVRP
190 200 210 220 230 240
212 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 06:36:03 2016 done: Sun Nov 6 06:36:04 2016
Total Scan time: 6.110 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]