FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3709, 212 aa
  1>>>pF1KE3709 212 - 212 aa - 212 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1829+/-0.000725; mu= 13.8757+/- 0.044
 mean_var=56.2674+/-11.221, 0's: 0 Z-trim(107.7): 11  B-trim: 68 in 1/49
 Lambda= 0.170980
 statistics sampled from 9765 (9770) to 9765 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.3), width:  16
 Scan time:  2.110

The best scores are:                                      opt bits E(32554)
CCDS33841.1 ROPN1B gene_id:152015|Hs108|chr3       ( 212) 1425 359.3   1e-99
CCDS3026.1 ROPN1 gene_id:54763|Hs108|chr3          ( 212) 1345 339.5 9.1e-94
CCDS3879.1 ROPN1L gene_id:83853|Hs108|chr5         ( 230)  521 136.3 1.5e-32


>>CCDS33841.1 ROPN1B gene_id:152015|Hs108|chr3            (212 aa)
 initn: 1425 init1: 1425 opt: 1425  Z-score: 1903.6  bits: 359.3 E(32554): 1e-99
Smith-Waterman score: 1425; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212)

               10        20        30        40        50        60
pF1KE3 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRERSERVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRERSERVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 LCNWAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LCNWAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 KFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDGEICASHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDGEICASHV
              130       140       150       160       170       180

              190       200       210  
pF1KE3 SRMLNYIEQEVIGPDGLITVNDFTQNPRVWLE
       ::::::::::::::::::::::::::::::::
CCDS33 SRMLNYIEQEVIGPDGLITVNDFTQNPRVWLE
              190       200       210  

>>CCDS3026.1 ROPN1 gene_id:54763|Hs108|chr3               (212 aa)
 initn: 1345 init1: 1345 opt: 1345  Z-score: 1796.9  bits: 339.5 E(32554): 9.1e-94
Smith-Waterman score: 1345; 95.8% identity (98.1% similar) in 212 aa overlap (1-212:1-212)

               10        20        30        40        50        60
pF1KE3 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRERSERVA
       :::::::::::::::::::::::::::.::::::::.:::::::::::::::::::::::
CCDS30 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRERSERVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 LCNWAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL
       ::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LCNRAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 KFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDGEICASHV
       :::::::::::::::::::::::::::::::: ::::::::::::::::.::::: ::::
CCDS30 KFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHV
              130       140       150       160       170       180

              190       200       210  
pF1KE3 SRMLNYIEQEVIGPDGLITVNDFTQNPRVWLE
       ::::::.:::::::::.:::::::::::: ::
CCDS30 SRMLNYMEQEVIGPDGIITVNDFTQNPRVQLE
              190       200       210  

>>CCDS3879.1 ROPN1L gene_id:83853|Hs108|chr5              (230 aa)
 initn: 529 init1: 303 opt: 521  Z-score: 697.9  bits: 136.3 E(32554): 1.5e-32
Smith-Waterman score: 521; 39.3% identity (71.4% similar) in 206 aa overlap (10-212:15-220)

                    10        20        30        40        50     
pF1KE3      MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRER
                     :::::: .::.:.:::::.:: :...:.: :: :::::.  ::..:
CCDS38 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
               10        20        30        40        50        60

          60          70        80        90       100       110   
pF1KE3 SERVALCNWAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF
        :  .  . ..  ::  :::.::.:   .  ..  .: : :: . :: . :......   
CCDS38 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
               70        80        90       100       110       120

           120       130       140       150       160       170   
pF1KE3 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDG
        ..:.:..::::.:: :: ... .:: .::.:. : .::  ::::.::...: :.:..:.
CCDS38 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS
              130       140       150       160       170       180

           180       190        200       210            
pF1KE3 EICASHVSRMLNYIEQEVIG-PDGLITVNDFTQNPRVWLE          
       ..   ..  .:  ..... .  .:.: ..::    :  ::          
CCDS38 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH
              190       200       210       220       230




212 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:36:02 2016 done: Sun Nov  6 06:36:03 2016
 Total Scan time:  2.110 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]