Result of FASTA (ccds) for
pFN21AE3707
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3707, 301 aa
1>>>pF1KE3707 301 - 301 aa - 301 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.5931+/-0.00102; mu= -6.2587+/- 0.062
mean_var=347.6654+/-70.497, 0's: 0 Z-trim(114.1): 31 B-trim: 0 in 0/53
Lambda= 0.068785
statistics sampled from 14646 (14675) to 14646 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.451), width: 16
Scan time: 2.450
The best scores are: opt bits E(32554)
CCDS31803.1 POU6F1 gene_id:5463|Hs108|chr12 ( 301) 1957 207.3 1.2e-53
CCDS81691.1 POU6F1 gene_id:5463|Hs108|chr12 ( 611) 1957 207.6 2e-53
CCDS55103.1 POU6F2 gene_id:11281|Hs108|chr7 ( 655) 926 105.3 1.3e-22
CCDS34620.2 POU6F2 gene_id:11281|Hs108|chr7 ( 691) 658 78.7 1.4e-14
>>CCDS31803.1 POU6F1 gene_id:5463|Hs108|chr12 (301 aa)
initn: 1957 init1: 1957 opt: 1957 Z-score: 1076.7 bits: 207.3 E(32554): 1.2e-53
Smith-Waterman score: 1957; 100.0% identity (100.0% similar) in 301 aa overlap (1-301:1-301)
10 20 30 40 50 60
pF1KE3 MPGISSQILTNAQGQVIGTLPWVVNSASVAAPAPAQSLQVQAVTPQLLLNAQGQVIATLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MPGISSQILTNAQGQVIGTLPWVVNSASVAAPAPAQSLQVQAVTPQLLLNAQGQVIATLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SSPLPPPVAVRKPSTPESPAKSEVQPIQPTPTVPQPAVVIASPAPAAKPSASAPIPITCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SSPLPPPVAVRKPSTPESPAKSEVQPIQPTPTVPQPAVVIASPAPAAKPSASAPIPITCS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ETPTVSQLVSKPHTPSLDEDGINLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ETPTVSQLVSKPHTPSLDEDGINLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 SQSAICRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQNLMEFVGGEPSKKRKRRTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SQSAICRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQNLMEFVGGEPSKKRKRRTS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 FTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKNTSKLNVFQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKNTSKLNVFQI
250 260 270 280 290 300
pF1KE3 P
:
CCDS31 P
>>CCDS81691.1 POU6F1 gene_id:5463|Hs108|chr12 (611 aa)
initn: 1957 init1: 1957 opt: 1957 Z-score: 1072.7 bits: 207.6 E(32554): 2e-53
Smith-Waterman score: 1957; 100.0% identity (100.0% similar) in 301 aa overlap (1-301:311-611)
10 20 30
pF1KE3 MPGISSQILTNAQGQVIGTLPWVVNSASVA
::::::::::::::::::::::::::::::
CCDS81 GIISAASLGGQTQILGSLTTAPVITSAIPSMPGISSQILTNAQGQVIGTLPWVVNSASVA
290 300 310 320 330 340
40 50 60 70 80 90
pF1KE3 APAPAQSLQVQAVTPQLLLNAQGQVIATLASSPLPPPVAVRKPSTPESPAKSEVQPIQPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 APAPAQSLQVQAVTPQLLLNAQGQVIATLASSPLPPPVAVRKPSTPESPAKSEVQPIQPT
350 360 370 380 390 400
100 110 120 130 140 150
pF1KE3 PTVPQPAVVIASPAPAAKPSASAPIPITCSETPTVSQLVSKPHTPSLDEDGINLEEIREF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PTVPQPAVVIASPAPAAKPSASAPIPITCSETPTVSQLVSKPHTPSLDEDGINLEEIREF
410 420 430 440 450 460
160 170 180 190 200 210
pF1KE3 AKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICRFEKLDITPKSAQKLKPVLEKWLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 AKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICRFEKLDITPKSAQKLKPVLEKWLN
470 480 490 500 510 520
220 230 240 250 260 270
pF1KE3 EAELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EAELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKE
530 540 550 560 570 580
280 290 300
pF1KE3 LNYDREVVRVWFCNRRQTLKNTSKLNVFQIP
:::::::::::::::::::::::::::::::
CCDS81 LNYDREVVRVWFCNRRQTLKNTSKLNVFQIP
590 600 610
>>CCDS55103.1 POU6F2 gene_id:11281|Hs108|chr7 (655 aa)
initn: 1102 init1: 896 opt: 926 Z-score: 519.4 bits: 105.3 E(32554): 1.3e-22
Smith-Waterman score: 1117; 59.3% identity (80.7% similar) in 305 aa overlap (1-294:328-631)
10 20
pF1KE3 MPGISSQILTNAQGQVIGTLPWVVNSA-SV
. :...:..::::::.:::.: . : . :
CCDS55 NNPLASQAAAAAAAMSSIASSQAFGNALSSLQGVTGQLVTNAQGQIIGTIPLMPNPGPSS
300 310 320 330 340 350
30 40 50 60 70 80
pF1KE3 AAPAPAQSLQVQAVTPQLLLNAQGQVIATLASSPLPPPVAVRKPS-TPESPAKSEVQPIQ
: . .:.:::: .::::: :::::.:::. .. . : . .. . .: .:... :: :
CCDS55 QAASGTQGLQVQPITPQLLTNAQGQIIATVIGNQILPVINTQGITLSPIKPGQQLHQPSQ
360 370 380 390 400 410
90 100 110 120 130
pF1KE3 PT--PTVPQPAVV-IA------SPAPAAKPSASAPIPITCSETPTVSQLVSKPHTPSLDE
. .. : .. .: : .:. . :.:. . : . .:.::::.:.: . .
CCDS55 TSVGQAASQGNLLHLAHSQASMSQSPVRQASSSSSSS-SSSSALSVGQLVSNPQTAAGEV
420 430 440 450 460 470
140 150 160 170 180 190
pF1KE3 DGINLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICRFEKLDITPKSAQ
::.:::::::::: :::::::::::::::::::.::::::::::::::::::::::::::
CCDS55 DGVNLEEIREFAKAFKIRRLSLGLTQTQVGQALSATEGPAYSQSAICRFEKLDITPKSAQ
480 490 500 510 520 530
200 210 220 230 240 250
pF1KE3 KLKPVLEKWLNEAELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLP
:.:::::.:. ::: :.. :.::: ::.:.::::::::::::::::.: :::.:::: :
CCDS55 KIKPVLERWMAEAEARHRAGMQNLTEFIGSEPSKKRKRRTSFTPQALEILNAHFEKNTHP
540 550 560 570 580 590
260 270 280 290 300
pF1KE3 TGQEITEIAKELNYDREVVRVWFCNRRQTLKNTSKLNVFQIP
.:::.::::..::::::::::::::.::.:::: :
CCDS55 SGQEMTEIAEKLNYDREVVRVWFCNKRQALKNTIKRLKQHEPATAVPLEPLTDSLEENS
600 610 620 630 640 650
>>CCDS34620.2 POU6F2 gene_id:11281|Hs108|chr7 (691 aa)
initn: 1102 init1: 579 opt: 658 Z-score: 375.3 bits: 78.7 E(32554): 1.4e-14
Smith-Waterman score: 977; 53.2% identity (71.3% similar) in 327 aa overlap (15-294:342-667)
10 20 30 40
pF1KE3 MPGISSQILTNAQGQVIGTLPWVVNSA-SVAAPAPAQSLQVQAV
:.:::.: . : . : : . .:.:::: .
CCDS34 MSSIASSQAFGNALSSLQGVTGQLVTNAQGQIIGTIPLMPNPGPSSQAASGTQGLQVQPI
320 330 340 350 360 370
50 60 70 80 90
pF1KE3 TPQLLLNAQGQVIATLASSPLPPPVAVRKPS-TPESPAKSEVQPIQPT--PTVPQPAVV-
::::: :::::.:::. .. . : . .. . .: .:... :: : . .. : ..
CCDS34 TPQLLTNAQGQIIATVIGNQILPVINTQGITLSPIKPGQQLHQPSQTSVGQAASQGNLLH
380 390 400 410 420 430
100 110 120 130 140 150
pF1KE3 IA------SPAPAAKPSASAPIPITCSETPTVSQLVSKPHTPSLDEDGINLEEIREFAKN
.: : .:. . :.:. . : . .:.::::.:.: . . ::.::::::::::
CCDS34 LAHSQASMSQSPVRQASSSSSSS-SSSSALSVGQLVSNPQTAAGEVDGVNLEEIREFAKA
440 450 460 470 480 490
160 170 180
pF1KE3 FKIRRLSLGLTQTQVGQALTATEGPAYSQSAICR--------------------------
:::::::::::::::::::.::::::::::::::
CCDS34 FKIRRLSLGLTQTQVGQALSATEGPAYSQSAICRHTILRSHFFLPQEAQENTIASSLTAK
500 510 520 530 540 550
190 200 210 220 230
pF1KE3 ----------FEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQNLMEFVGGEPSKKRKR
:::::::::::::.:::::.:. ::: :.. :.::: ::.:.::::::::
CCDS34 LNPGLLYPARFEKLDITPKSAQKIKPVLERWMAEAEARHRAGMQNLTEFIGSEPSKKRKR
560 570 580 590 600 610
240 250 260 270 280 290
pF1KE3 RTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKNTSKLNV
::::::::.: :::.:::: :.:::.::::..::::::::::::::.::.:::: :
CCDS34 RTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVWFCNKRQALKNTIKRLK
620 630 640 650 660 670
300
pF1KE3 FQIP
CCDS34 QHEPATAVPLEPLTDSLEENS
680 690
301 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 06:34:26 2016 done: Sun Nov 6 06:34:26 2016
Total Scan time: 2.450 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]