Result of FASTA (omim) for
pFN21AE3680
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3680, 161 aa
1>>>pF1KE3680 161 - 161 aa - 161 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.3441+/-0.000282; mu= 1.2035+/- 0.018
mean_var=215.5857+/-43.863, 0's: 0 Z-trim(125.5): 13 B-trim: 367 in 1/59
Lambda= 0.087350
statistics sampled from 49221 (49234) to 49221 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.848), E-opt: 0.2 (0.577), width: 16
Scan time: 5.730
The best scores are: opt bits E(85289)
XP_006721048 (OMIM: 601098,603795) PREDICTED: lipo ( 161) 1174 158.7 3.6e-39
XP_016879385 (OMIM: 601098,603795) PREDICTED: lipo ( 161) 1174 158.7 3.6e-39
XP_006721047 (OMIM: 601098,603795) PREDICTED: lipo ( 161) 1174 158.7 3.6e-39
NP_001129944 (OMIM: 601098,603795) lipopolysacchar ( 161) 1174 158.7 3.6e-39
NP_004853 (OMIM: 601098,603795) lipopolysaccharide ( 161) 1174 158.7 3.6e-39
XP_006721046 (OMIM: 601098,603795) PREDICTED: lipo ( 161) 1174 158.7 3.6e-39
XP_006721045 (OMIM: 601098,603795) PREDICTED: lipo ( 161) 1174 158.7 3.6e-39
XP_011521056 (OMIM: 601098,603795) PREDICTED: lipo ( 191) 1174 158.8 4.1e-39
NP_001129945 (OMIM: 601098,603795) lipopolysacchar ( 152) 900 124.2 8.6e-29
NP_001185983 (OMIM: 610503) cell death-inducing p5 ( 208) 349 54.9 8.7e-08
NP_037531 (OMIM: 610503) cell death-inducing p53-t ( 208) 349 54.9 8.7e-08
NP_001185985 (OMIM: 610503) cell death-inducing p5 ( 129) 315 50.4 1.2e-06
NP_001185984 (OMIM: 610503) cell death-inducing p5 ( 169) 312 50.1 1.9e-06
>>XP_006721048 (OMIM: 601098,603795) PREDICTED: lipopoly (161 aa)
initn: 1174 init1: 1174 opt: 1174 Z-score: 824.2 bits: 158.7 E(85289): 3.6e-39
Smith-Waterman score: 1174; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)
10 20 30 40 50 60
pF1KE3 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG
70 80 90 100 110 120
130 140 150 160
pF1KE3 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL
:::::::::::::::::::::::::::::::::::::::::
XP_006 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL
130 140 150 160
>>XP_016879385 (OMIM: 601098,603795) PREDICTED: lipopoly (161 aa)
initn: 1174 init1: 1174 opt: 1174 Z-score: 824.2 bits: 158.7 E(85289): 3.6e-39
Smith-Waterman score: 1174; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)
10 20 30 40 50 60
pF1KE3 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG
70 80 90 100 110 120
130 140 150 160
pF1KE3 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL
:::::::::::::::::::::::::::::::::::::::::
XP_016 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL
130 140 150 160
>>XP_006721047 (OMIM: 601098,603795) PREDICTED: lipopoly (161 aa)
initn: 1174 init1: 1174 opt: 1174 Z-score: 824.2 bits: 158.7 E(85289): 3.6e-39
Smith-Waterman score: 1174; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)
10 20 30 40 50 60
pF1KE3 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG
70 80 90 100 110 120
130 140 150 160
pF1KE3 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL
:::::::::::::::::::::::::::::::::::::::::
XP_006 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL
130 140 150 160
>>NP_001129944 (OMIM: 601098,603795) lipopolysaccharide- (161 aa)
initn: 1174 init1: 1174 opt: 1174 Z-score: 824.2 bits: 158.7 E(85289): 3.6e-39
Smith-Waterman score: 1174; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)
10 20 30 40 50 60
pF1KE3 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG
70 80 90 100 110 120
130 140 150 160
pF1KE3 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL
:::::::::::::::::::::::::::::::::::::::::
NP_001 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL
130 140 150 160
>>NP_004853 (OMIM: 601098,603795) lipopolysaccharide-ind (161 aa)
initn: 1174 init1: 1174 opt: 1174 Z-score: 824.2 bits: 158.7 E(85289): 3.6e-39
Smith-Waterman score: 1174; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)
10 20 30 40 50 60
pF1KE3 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG
70 80 90 100 110 120
130 140 150 160
pF1KE3 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL
:::::::::::::::::::::::::::::::::::::::::
NP_004 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL
130 140 150 160
>>XP_006721046 (OMIM: 601098,603795) PREDICTED: lipopoly (161 aa)
initn: 1174 init1: 1174 opt: 1174 Z-score: 824.2 bits: 158.7 E(85289): 3.6e-39
Smith-Waterman score: 1174; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)
10 20 30 40 50 60
pF1KE3 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG
70 80 90 100 110 120
130 140 150 160
pF1KE3 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL
:::::::::::::::::::::::::::::::::::::::::
XP_006 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL
130 140 150 160
>>XP_006721045 (OMIM: 601098,603795) PREDICTED: lipopoly (161 aa)
initn: 1174 init1: 1174 opt: 1174 Z-score: 824.2 bits: 158.7 E(85289): 3.6e-39
Smith-Waterman score: 1174; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)
10 20 30 40 50 60
pF1KE3 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG
70 80 90 100 110 120
130 140 150 160
pF1KE3 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL
:::::::::::::::::::::::::::::::::::::::::
XP_006 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL
130 140 150 160
>>XP_011521056 (OMIM: 601098,603795) PREDICTED: lipopoly (191 aa)
initn: 1174 init1: 1174 opt: 1174 Z-score: 823.2 bits: 158.8 E(85289): 4.1e-39
Smith-Waterman score: 1174; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:31-191)
10 20 30
pF1KE3 MSVPGPYQAATGPSSAPSAPPSYEETVAVN
::::::::::::::::::::::::::::::
XP_011 MTFVNCHGAGGSVAVRKTRVRPRRRLGFGKMSVPGPYQAATGPSSAPSAPPSYEETVAVN
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE3 SYYPTPPAPMPGPTTGLVTGPDGKGMNPPSYYTQPAPIPNNNPITVQTVYVQHPITFLDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SYYPTPPAPMPGPTTGLVTGPDGKGMNPPSYYTQPAPIPNNNPITVQTVYVQHPITFLDR
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE3 PIQMCCPSCNKMIVSQLSYNAGALTWLSCGSLCLLGCIAGCCFIPFCVDALQDVDHYCPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PIQMCCPSCNKMIVSQLSYNAGALTWLSCGSLCLLGCIAGCCFIPFCVDALQDVDHYCPN
130 140 150 160 170 180
160
pF1KE3 CRALLGTYKRL
:::::::::::
XP_011 CRALLGTYKRL
190
>>NP_001129945 (OMIM: 601098,603795) lipopolysaccharide- (152 aa)
initn: 900 init1: 900 opt: 900 Z-score: 637.9 bits: 124.2 E(85289): 8.6e-29
Smith-Waterman score: 900; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KE3 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG
70 80 90 100 110 120
130 140 150 160
pF1KE3 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL
::::::
NP_001 SLCLLGQECSGTIVALRSFDLLGSCNPPSSAS
130 140 150
>>NP_001185983 (OMIM: 610503) cell death-inducing p53-ta (208 aa)
initn: 315 init1: 260 opt: 349 Z-score: 260.8 bits: 54.9 E(85289): 8.7e-08
Smith-Waterman score: 349; 36.4% identity (58.0% similar) in 162 aa overlap (4-161:51-207)
10 20 30
pF1KE3 MSVPGPYQAATGPSSAPS-APP--SYEETVAVN
: ::. : :. :: : . :
NP_001 KSGAPPTPGRSSPAVMQPPPGMPLPPADIGPPPYEPPGHPMPQPGFIPPHMSADGTYMPP
30 40 50 60 70 80
40 50 60 70 80
pF1KE3 SYYPTPPAPMPGPTTGLVTGPDGKGMNP-PSYYTQPAPIPNNNPITVQTVYVQHPITFLD
..:: ::.: : : :: : : :. .: . .:.. :: :: .: : :
NP_001 GFYP-PPGPHP-PMGYYPPGPYTPGPYPGPGGHTATVLVPSGAATTV-TV-LQGEI-FEG
90 100 110 120 130
90 100 110 120 130 140
pF1KE3 RPIQMCCPSCNKMIVSQLSYNAGALTWLSCGSLCLLGCIAGCCFIPFCVDALQDVDHYCP
:.: :: :.. :....::. : .... :..:: :::.:: .. ..:: : ::
NP_001 APVQTVCPHCQQAITTKISYEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTHTCP
140 150 160 170 180 190
150 160
pF1KE3 NCRALLGTYKRL
.:.: . :::::
NP_001 SCKAYIYTYKRLC
200
161 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 12:20:11 2016 done: Sun Nov 6 12:20:11 2016
Total Scan time: 5.730 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]