FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3680, 161 aa
  1>>>pF1KE3680 161 - 161 aa - 161 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6941+/-0.00073; mu= 5.0926+/- 0.044
 mean_var=204.1818+/-40.740, 0's: 0 Z-trim(118.0): 6  B-trim: 457 in 1/53
 Lambda= 0.089756
 statistics sampled from 18825 (18830) to 18825 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.853), E-opt: 0.2 (0.578), width:  16
 Scan time:  2.110

The best scores are:                                      opt bits E(32554)
CCDS32386.1 LITAF gene_id:9516|Hs108|chr16         ( 161) 1174 162.6 9.6e-41
CCDS45411.1 LITAF gene_id:9516|Hs108|chr16         ( 152)  900 127.1 4.4e-30


>>CCDS32386.1 LITAF gene_id:9516|Hs108|chr16              (161 aa)
 initn: 1174 init1: 1174 opt: 1174  Z-score: 844.9  bits: 162.6 E(32554): 9.6e-41
Smith-Waterman score: 1174; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KE3 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG
               70        80        90       100       110       120

              130       140       150       160 
pF1KE3 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL
       :::::::::::::::::::::::::::::::::::::::::
CCDS32 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL
              130       140       150       160 

>>CCDS45411.1 LITAF gene_id:9516|Hs108|chr16              (152 aa)
 initn: 900 init1: 900 opt: 900  Z-score: 653.5  bits: 127.1 E(32554): 4.4e-30
Smith-Waterman score: 900; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126)

               10        20        30        40        50        60
pF1KE3 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG
               70        80        90       100       110       120

              130       140       150       160 
pF1KE3 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL
       ::::::                                   
CCDS45 SLCLLGQECSGTIVALRSFDLLGSCNPPSSAS         
              130       140       150           




161 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:20:10 2016 done: Sun Nov  6 12:20:10 2016
 Total Scan time:  2.110 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]