FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3678, 317 aa
  1>>>pF1KE3678 317 - 317 aa - 317 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0129+/-0.000784; mu= 10.5523+/- 0.048
 mean_var=154.9318+/-30.282, 0's: 0 Z-trim(114.0): 50  B-trim: 0 in 0/53
 Lambda= 0.103040
 statistics sampled from 14540 (14588) to 14540 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.448), width:  16
 Scan time:  3.030

The best scores are:                                      opt bits E(32554)
CCDS45919.1 HMG20B gene_id:10362|Hs108|chr19       ( 317) 2100 323.2 1.7e-88
CCDS10295.1 HMG20A gene_id:10363|Hs108|chr15       ( 347)  984 157.3 1.5e-38


>>CCDS45919.1 HMG20B gene_id:10362|Hs108|chr19            (317 aa)
 initn: 2100 init1: 2100 opt: 2100  Z-score: 1702.5  bits: 323.2 E(32554): 1.7e-88
Smith-Waterman score: 2100; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317)

               10        20        30        40        50        60
pF1KE3 MSHGPKQPGAAAAPAGGKAPGQHGGFVVTVKQERGEGPRAGEKGSHEEEPVKKRGWPKGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSHGPKQPGAAAAPAGGKAPGQHGGFVVTVKQERGEGPRAGEKGSHEEEPVKKRGWPKGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 DEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDSSSGLMNTLLNGHKGGDCDGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDSSSGLMNTLLNGHKGGDCDGF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELAL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 EERRTLALQQQLQAVRQALTASFASLPVPGTGETPTLGTLDFYMARLHGAIERDPAQHEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EERRTLALQQQLQAVRQALTASFASLPVPGTGETPTLGTLDFYMARLHGAIERDPAQHEK
              250       260       270       280       290       300

              310       
pF1KE3 LIVRIKEILAQVASEHL
       :::::::::::::::::
CCDS45 LIVRIKEILAQVASEHL
              310       

>>CCDS10295.1 HMG20A gene_id:10363|Hs108|chr15            (347 aa)
 initn: 932 init1: 858 opt: 984  Z-score: 805.4  bits: 157.3 E(32554): 1.5e-38
Smith-Waterman score: 984; 48.4% identity (77.8% similar) in 320 aa overlap (1-312:31-345)

                                             10        20        30
pF1KE3                               MSHGPKQPGAAAAPAGGKAPGQHGGFVVTV
                                     ..: :. : ...: .. . :     ::  .
CCDS10 MENLMTSSTLPPLFADEDGSKESNDLATTGLNH-PEVPYSSGATSSTNNP----EFVEDL
               10        20        30         40            50     

                  40          50         60          70        80  
pF1KE3 KQER---GEGPRA--GEKGSHEEEPVKKRG-WPKGKKRKKIL--PNGPKAPVTGYVRFLN
       .: .   .:.  :  :..  ::.:  .::: : ::.:::: :   :.::.:.::::::.:
CCDS10 SQGQLLQSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMN
          60        70        80        90       100       110     

             90       100       110       120       130       140  
pF1KE3 ERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEA
       :::::.:...:..::::::.::: ::::: : :::::::::.:.:..:::::. ::..::
CCDS10 ERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEA
         120       130       140       150       160       170     

            150       160       170       180       190       200  
pF1KE3 YKMCTEKIQEKKIKKEDSSSGLMNTLLNGHKGGDCDGFSTFDVPIFTEEFLDQNKAREAE
       ::. ..: :...  :   ...  ..  . .:  .    :.::.::::::::...::::::
CCDS10 YKVFSRKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKAREAE
         180       190       200       210       220       230     

            210       220       230       240       250       260  
pF1KE3 LRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELALEERRTLALQQQLQAVRQALTAS
       ::.::: :. :::.::.::.:..:: .: :.:: ..  :. :. .:::.:...::.::.:
CCDS10 LRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSS
         240       250       260       270       280       290     

            270       280       290       300       310       
pF1KE3 FASLPVPGTGETPTLGTLDFYMARLHGAIERDPAQHEKLIVRIKEILAQVASEHL
       :::.:.::.:::::. :.: :: :::. :  .: ..:..:. ..:.. ..     
CCDS10 FASMPLPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVREVVNRLDR   
         300       310       320       330       340          




317 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 10:37:14 2016 done: Sun Nov  6 10:37:15 2016
 Total Scan time:  3.030 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]