Result of FASTA (omim) for
pFN21AE3675
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3675, 366 aa
1>>>pF1KE3675 366 - 366 aa - 366 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0468+/-0.000423; mu= 12.6515+/- 0.026
mean_var=81.0903+/-17.085, 0's: 0 Z-trim(112.5): 230 B-trim: 1497 in 2/51
Lambda= 0.142426
statistics sampled from 21104 (21386) to 21104 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.611), E-opt: 0.2 (0.251), width: 16
Scan time: 6.770
The best scores are: opt bits E(85289)
NP_073743 (OMIM: 612849) ubiquitin carboxyl-termin ( 366) 2454 514.2 1.9e-145
NP_001127695 (OMIM: 612849) ubiquitin carboxyl-ter ( 359) 2385 500.0 3.5e-141
XP_016864046 (OMIM: 612849) PREDICTED: ubiquitin c ( 341) 2248 471.8 9.8e-133
NP_001273696 (OMIM: 612849) ubiquitin carboxyl-ter ( 354) 2104 442.2 8.2e-124
NP_001273697 (OMIM: 612849) ubiquitin carboxyl-ter ( 225) 1464 310.6 2.1e-84
XP_016878211 (OMIM: 603158) PREDICTED: ubiquitin c ( 928) 414 95.2 6.5e-19
XP_016878210 (OMIM: 603158) PREDICTED: ubiquitin c ( 928) 414 95.2 6.5e-19
NP_001269978 (OMIM: 603158) ubiquitin carboxyl-ter (1012) 414 95.2 7e-19
XP_016878208 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 414 95.2 7.4e-19
XP_016878209 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 414 95.2 7.4e-19
XP_006720825 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 414 95.2 7.4e-19
XP_016878207 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 414 95.2 7.4e-19
XP_011520495 (OMIM: 603158) PREDICTED: ubiquitin c (1118) 414 95.2 7.6e-19
NP_001122082 (OMIM: 603158) ubiquitin carboxyl-ter (1118) 414 95.2 7.6e-19
NP_005145 (OMIM: 603158) ubiquitin carboxyl-termin (1118) 414 95.2 7.6e-19
XP_006720824 (OMIM: 603158) PREDICTED: ubiquitin c (1118) 414 95.2 7.6e-19
XP_011523373 (OMIM: 612543) PREDICTED: ubiquitin c ( 739) 316 75.0 6.1e-13
XP_011523372 (OMIM: 612543) PREDICTED: ubiquitin c ( 914) 316 75.0 7.3e-13
XP_011523371 (OMIM: 612543) PREDICTED: ubiquitin c ( 925) 316 75.0 7.4e-13
XP_011523370 (OMIM: 612543) PREDICTED: ubiquitin c ( 959) 316 75.1 7.7e-13
XP_016880390 (OMIM: 612543) PREDICTED: ubiquitin c (1044) 316 75.1 8.2e-13
XP_016880389 (OMIM: 612543) PREDICTED: ubiquitin c (1123) 316 75.1 8.8e-13
XP_005257599 (OMIM: 612543) PREDICTED: ubiquitin c (1123) 316 75.1 8.8e-13
XP_005257600 (OMIM: 612543) PREDICTED: ubiquitin c (1123) 316 75.1 8.8e-13
NP_001308220 (OMIM: 612543) ubiquitin carboxyl-ter (1123) 316 75.1 8.8e-13
XP_011523368 (OMIM: 612543) PREDICTED: ubiquitin c (1124) 316 75.1 8.8e-13
XP_011523369 (OMIM: 612543) PREDICTED: ubiquitin c (1124) 316 75.1 8.8e-13
XP_011523367 (OMIM: 612543) PREDICTED: ubiquitin c (1124) 316 75.1 8.8e-13
NP_958804 (OMIM: 610186) ubiquitin carboxyl-termin ( 530) 301 71.8 3.9e-12
XP_016878257 (OMIM: 604728) PREDICTED: ubiquitin c ( 351) 296 70.7 5.6e-12
XP_016878255 (OMIM: 604728) PREDICTED: ubiquitin c ( 435) 296 70.8 6.7e-12
XP_016878256 (OMIM: 604728) PREDICTED: ubiquitin c ( 435) 296 70.8 6.7e-12
NP_001243631 (OMIM: 604728) ubiquitin carboxyl-ter ( 476) 296 70.8 7.2e-12
XP_016878252 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 296 70.8 7.5e-12
XP_016878254 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 296 70.8 7.5e-12
XP_016878253 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 296 70.8 7.5e-12
NP_006528 (OMIM: 604728) ubiquitin carboxyl-termin ( 520) 296 70.8 7.8e-12
XP_016874028 (OMIM: 604725) PREDICTED: ubiquitin c ( 352) 286 68.7 2.3e-11
NP_001230688 (OMIM: 604725) ubiquitin carboxyl-ter ( 362) 286 68.7 2.4e-11
NP_741994 (OMIM: 604725) ubiquitin carboxyl-termin ( 396) 286 68.7 2.6e-11
XP_011509703 (OMIM: 610570) PREDICTED: ubiquitin c ( 807) 288 69.3 3.6e-11
NP_004196 (OMIM: 604725) ubiquitin carboxyl-termin ( 605) 286 68.8 3.7e-11
XP_005271778 (OMIM: 604725) PREDICTED: ubiquitin c ( 605) 286 68.8 3.7e-11
XP_005271779 (OMIM: 604725) PREDICTED: ubiquitin c ( 605) 286 68.8 3.7e-11
XP_011509702 (OMIM: 610570) PREDICTED: ubiquitin c (1112) 288 69.3 4.7e-11
XP_011509700 (OMIM: 610570) PREDICTED: ubiquitin c (1165) 288 69.3 4.9e-11
XP_016859915 (OMIM: 610570) PREDICTED: ubiquitin c (1236) 288 69.3 5.1e-11
XP_011509699 (OMIM: 610570) PREDICTED: ubiquitin c (1240) 288 69.3 5.2e-11
NP_060688 (OMIM: 610570) ubiquitin carboxyl-termin (1247) 288 69.3 5.2e-11
XP_006712675 (OMIM: 610570) PREDICTED: ubiquitin c (1248) 288 69.3 5.2e-11
>>NP_073743 (OMIM: 612849) ubiquitin carboxyl-terminal h (366 aa)
initn: 2454 init1: 2454 opt: 2454 Z-score: 2732.2 bits: 514.2 E(85289): 1.9e-145
Smith-Waterman score: 2454; 100.0% identity (100.0% similar) in 366 aa overlap (1-366:1-366)
10 20 30 40 50 60
pF1KE3 MTVRNIASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 MTVRNIASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 ENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 AHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 AHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNET
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 RCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 RCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 RMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 RMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 VVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 VVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYIL
310 320 330 340 350 360
pF1KE3 FYQSRE
::::::
NP_073 FYQSRE
>>NP_001127695 (OMIM: 612849) ubiquitin carboxyl-termina (359 aa)
initn: 2385 init1: 2385 opt: 2385 Z-score: 2655.8 bits: 500.0 E(85289): 3.5e-141
Smith-Waterman score: 2385; 99.4% identity (99.7% similar) in 357 aa overlap (10-366:3-359)
10 20 30 40 50 60
pF1KE3 MTVRNIASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFR
: .::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNCFQGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFR
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 ENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQD
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 AHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNET
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE3 RCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQK
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE3 RMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVA
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE3 VVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYIL
300 310 320 330 340 350
pF1KE3 FYQSRE
::::::
NP_001 FYQSRE
>>XP_016864046 (OMIM: 612849) PREDICTED: ubiquitin carbo (341 aa)
initn: 2248 init1: 2248 opt: 2248 Z-score: 2504.0 bits: 471.8 E(85289): 9.8e-133
Smith-Waterman score: 2248; 100.0% identity (100.0% similar) in 333 aa overlap (1-333:1-333)
10 20 30 40 50 60
pF1KE3 MTVRNIASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTVRNIASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 AHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNET
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 RCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 RMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 VVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYIL
:::::::::::::::::::::::::::::::::
XP_016 VVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEVGLQIILQ
310 320 330 340
pF1KE3 FYQSRE
>>NP_001273696 (OMIM: 612849) ubiquitin carboxyl-termina (354 aa)
initn: 2104 init1: 2104 opt: 2104 Z-score: 2343.8 bits: 442.2 E(85289): 8.2e-124
Smith-Waterman score: 2329; 96.7% identity (96.7% similar) in 366 aa overlap (1-366:1-354)
10 20 30 40 50 60
pF1KE3 MTVRNIASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFR
::::::::::::::::::::::::::::::::::::::: :::::::::
NP_001 MTVRNIASICNMGTNASALEKDIGPEQFPINEHYFGLVN------------ALYFCRPFR
10 20 30 40
70 80 90 100 110 120
pF1KE3 ENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQD
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE3 AHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNET
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE3 RCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQK
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE3 RMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVA
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE3 VVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYIL
290 300 310 320 330 340
pF1KE3 FYQSRE
::::::
NP_001 FYQSRE
350
>>NP_001273697 (OMIM: 612849) ubiquitin carboxyl-termina (225 aa)
initn: 1464 init1: 1464 opt: 1464 Z-score: 1636.1 bits: 310.6 E(85289): 2.1e-84
Smith-Waterman score: 1464; 100.0% identity (100.0% similar) in 217 aa overlap (117-333:1-217)
90 100 110 120 130 140
pF1KE3 IATQKKKVGVIPPKKFISRLRKENDLFDNYMQQDAHEFLNYLLNTIADILQEEKKQEKQN
::::::::::::::::::::::::::::::
NP_001 MQQDAHEFLNYLLNTIADILQEEKKQEKQN
10 20 30
150 160 170 180 190 200
pF1KE3 GKLKNGNMNEPAENNKPELTWVHEIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKLKNGNMNEPAENNKPELTWVHEIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNT
40 50 60 70 80 90
210 220 230 240 250 260
pF1KE3 SITHCLRDFSNTETLCSEQKYYCETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SITHCLRDFSNTETLCSEQKYYCETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHR
100 110 120 130 140 150
270 280 290 300 310 320
pF1KE3 YTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGFWLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGFWLL
160 170 180 190 200 210
330 340 350 360
pF1KE3 FDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQSRE
:::::::
NP_001 FDDDIVEVGLQIILQ
220
>>XP_016878211 (OMIM: 603158) PREDICTED: ubiquitin carbo (928 aa)
initn: 320 init1: 166 opt: 414 Z-score: 460.6 bits: 95.2 E(85289): 6.5e-19
Smith-Waterman score: 464; 31.9% identity (57.5% similar) in 348 aa overlap (36-364:588-918)
10 20 30 40 50 60
pF1KE3 IASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCR-PFRENVL
:: :.::::: ::.:: : : : . .
XP_016 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCL--CNAPHLADYF
560 570 580 590 600 610
70 80 90 100 110
pF1KE3 AYKAQQK--KKENLLTC---LADLFHSI--ATQKKKVGVIPPKKFISRLRKENDLFDNYM
. : .. ::: .:. : : : . : :: : . : :: : .:
XP_016 NRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYS
620 630 640 650 660 670
120 130 140 150 160 170
pF1KE3 QQDAHEFLNYLLNTIADILQE----EKKQEKQNGKLKNGNMNEPAENNKPEL--TWVHEI
:::..:.: .:.. . . :.. .. .:..: .: . . : : ... .: . . .
XP_016 QQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVAL
680 690 700 710 720 730
180 190 200 210 220
pF1KE3 FQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSIT--HCLRDFSNTETLCSEQKYYC
::: . . ..::.:. : : :. ::. . .... : ::: ::. : : .....::
XP_016 FQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYC
740 750 760 770 780 790
230 240 250 260 270 280
pF1KE3 ETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLE-LRLFNTSSD
: ..... :.... ::: .: .:::::.: . .. ::. : :::: : : .
XP_016 SHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ--KLQTSVDFPLENLDLSQYVIG
800 810 820 830 840 850
290 300 310 320 330 340
pF1KE3 AVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGF--WLLFDDDIVEKIDAQAIEEFYGL
: . :.: .: : : : . ::: . :. . :. ::: : :......
XP_016 PKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK-----
860 870 880 890 900
350 360
pF1KE3 TSDISKNSESGYILFYQSRE
: ..::::: :
XP_016 -------SSAAYILFYTSLGPRVTDVAT
910 920
>>XP_016878210 (OMIM: 603158) PREDICTED: ubiquitin carbo (928 aa)
initn: 320 init1: 166 opt: 414 Z-score: 460.6 bits: 95.2 E(85289): 6.5e-19
Smith-Waterman score: 464; 31.9% identity (57.5% similar) in 348 aa overlap (36-364:588-918)
10 20 30 40 50 60
pF1KE3 IASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCR-PFRENVL
:: :.::::: ::.:: : : : . .
XP_016 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCL--CNAPHLADYF
560 570 580 590 600 610
70 80 90 100 110
pF1KE3 AYKAQQK--KKENLLTC---LADLFHSI--ATQKKKVGVIPPKKFISRLRKENDLFDNYM
. : .. ::: .:. : : : . : :: : . : :: : .:
XP_016 NRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYS
620 630 640 650 660 670
120 130 140 150 160 170
pF1KE3 QQDAHEFLNYLLNTIADILQE----EKKQEKQNGKLKNGNMNEPAENNKPEL--TWVHEI
:::..:.: .:.. . . :.. .. .:..: .: . . : : ... .: . . .
XP_016 QQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVAL
680 690 700 710 720 730
180 190 200 210 220
pF1KE3 FQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSIT--HCLRDFSNTETLCSEQKYYC
::: . . ..::.:. : : :. ::. . .... : ::: ::. : : .....::
XP_016 FQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYC
740 750 760 770 780 790
230 240 250 260 270 280
pF1KE3 ETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLE-LRLFNTSSD
: ..... :.... ::: .: .:::::.: . .. ::. : :::: : : .
XP_016 SHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ--KLQTSVDFPLENLDLSQYVIG
800 810 820 830 840 850
290 300 310 320 330 340
pF1KE3 AVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGF--WLLFDDDIVEKIDAQAIEEFYGL
: . :.: .: : : : . ::: . :. . :. ::: : :......
XP_016 PKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK-----
860 870 880 890 900
350 360
pF1KE3 TSDISKNSESGYILFYQSRE
: ..::::: :
XP_016 -------SSAAYILFYTSLGPRVTDVAT
910 920
>>NP_001269978 (OMIM: 603158) ubiquitin carboxyl-termina (1012 aa)
initn: 320 init1: 166 opt: 414 Z-score: 460.0 bits: 95.2 E(85289): 7e-19
Smith-Waterman score: 464; 31.9% identity (57.5% similar) in 348 aa overlap (36-364:672-1002)
10 20 30 40 50 60
pF1KE3 IASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCR-PFRENVL
:: :.::::: ::.:: : : : . .
NP_001 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCL--CNAPHLADYF
650 660 670 680 690
70 80 90 100 110
pF1KE3 AYKAQQK--KKENLLTC---LADLFHSI--ATQKKKVGVIPPKKFISRLRKENDLFDNYM
. : .. ::: .:. : : : . : :: : . : :: : .:
NP_001 NRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYS
700 710 720 730 740 750
120 130 140 150 160 170
pF1KE3 QQDAHEFLNYLLNTIADILQE----EKKQEKQNGKLKNGNMNEPAENNKPEL--TWVHEI
:::..:.: .:.. . . :.. .. .:..: .: . . : : ... .: . . .
NP_001 QQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVAL
760 770 780 790 800 810
180 190 200 210 220
pF1KE3 FQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSIT--HCLRDFSNTETLCSEQKYYC
::: . . ..::.:. : : :. ::. . .... : ::: ::. : : .....::
NP_001 FQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYC
820 830 840 850 860 870
230 240 250 260 270 280
pF1KE3 ETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLE-LRLFNTSSD
: ..... :.... ::: .: .:::::.: . .. ::. : :::: : : .
NP_001 SHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ--KLQTSVDFPLENLDLSQYVIG
880 890 900 910 920 930
290 300 310 320 330 340
pF1KE3 AVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGF--WLLFDDDIVEKIDAQAIEEFYGL
: . :.: .: : : : . ::: . :. . :. ::: : :......
NP_001 PKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK-----
940 950 960 970 980 990
350 360
pF1KE3 TSDISKNSESGYILFYQSRE
: ..::::: :
NP_001 -------SSAAYILFYTSLGPRVTDVAT
1000 1010
>>XP_016878208 (OMIM: 603158) PREDICTED: ubiquitin carbo (1089 aa)
initn: 320 init1: 166 opt: 414 Z-score: 459.5 bits: 95.2 E(85289): 7.4e-19
Smith-Waterman score: 464; 31.9% identity (57.5% similar) in 348 aa overlap (36-364:749-1079)
10 20 30 40 50 60
pF1KE3 IASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCR-PFRENVL
:: :.::::: ::.:: : : : . .
XP_016 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCL--CNAPHLADYF
720 730 740 750 760 770
70 80 90 100 110
pF1KE3 AYKAQQK--KKENLLTC---LADLFHSI--ATQKKKVGVIPPKKFISRLRKENDLFDNYM
. : .. ::: .:. : : : . : :: : . : :: : .:
XP_016 NRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYS
780 790 800 810 820 830
120 130 140 150 160 170
pF1KE3 QQDAHEFLNYLLNTIADILQE----EKKQEKQNGKLKNGNMNEPAENNKPEL--TWVHEI
:::..:.: .:.. . . :.. .. .:..: .: . . : : ... .: . . .
XP_016 QQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVAL
840 850 860 870 880 890
180 190 200 210 220
pF1KE3 FQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSIT--HCLRDFSNTETLCSEQKYYC
::: . . ..::.:. : : :. ::. . .... : ::: ::. : : .....::
XP_016 FQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYC
900 910 920 930 940 950
230 240 250 260 270 280
pF1KE3 ETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLE-LRLFNTSSD
: ..... :.... ::: .: .:::::.: . .. ::. : :::: : : .
XP_016 SHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ--KLQTSVDFPLENLDLSQYVIG
960 970 980 990 1000 1010
290 300 310 320 330 340
pF1KE3 AVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGF--WLLFDDDIVEKIDAQAIEEFYGL
: . :.: .: : : : . ::: . :. . :. ::: : :......
XP_016 PKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK-----
1020 1030 1040 1050 1060
350 360
pF1KE3 TSDISKNSESGYILFYQSRE
: ..::::: :
XP_016 -------SSAAYILFYTSLGPRVTDVAT
1070 1080
>>XP_016878209 (OMIM: 603158) PREDICTED: ubiquitin carbo (1089 aa)
initn: 320 init1: 166 opt: 414 Z-score: 459.5 bits: 95.2 E(85289): 7.4e-19
Smith-Waterman score: 464; 31.9% identity (57.5% similar) in 348 aa overlap (36-364:749-1079)
10 20 30 40 50 60
pF1KE3 IASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCR-PFRENVL
:: :.::::: ::.:: : : : . .
XP_016 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCL--CNAPHLADYF
720 730 740 750 760 770
70 80 90 100 110
pF1KE3 AYKAQQK--KKENLLTC---LADLFHSI--ATQKKKVGVIPPKKFISRLRKENDLFDNYM
. : .. ::: .:. : : : . : :: : . : :: : .:
XP_016 NRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYS
780 790 800 810 820 830
120 130 140 150 160 170
pF1KE3 QQDAHEFLNYLLNTIADILQE----EKKQEKQNGKLKNGNMNEPAENNKPEL--TWVHEI
:::..:.: .:.. . . :.. .. .:..: .: . . : : ... .: . . .
XP_016 QQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVAL
840 850 860 870 880 890
180 190 200 210 220
pF1KE3 FQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSIT--HCLRDFSNTETLCSEQKYYC
::: . . ..::.:. : : :. ::. . .... : ::: ::. : : .....::
XP_016 FQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYC
900 910 920 930 940 950
230 240 250 260 270 280
pF1KE3 ETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLE-LRLFNTSSD
: ..... :.... ::: .: .:::::.: . .. ::. : :::: : : .
XP_016 SHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ--KLQTSVDFPLENLDLSQYVIG
960 970 980 990 1000 1010
290 300 310 320 330 340
pF1KE3 AVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGF--WLLFDDDIVEKIDAQAIEEFYGL
: . :.: .: : : : . ::: . :. . :. ::: : :......
XP_016 PKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK-----
1020 1030 1040 1050 1060
350 360
pF1KE3 TSDISKNSESGYILFYQSRE
: ..::::: :
XP_016 -------SSAAYILFYTSLGPRVTDVAT
1070 1080
366 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 01:28:21 2016 done: Tue Nov 8 01:28:22 2016
Total Scan time: 6.770 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]