Result of FASTA (omim) for
pFN21AE3674
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3674, 399 aa
1>>>pF1KE3674 399 - 399 aa - 399 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7625+/-0.000406; mu= 20.0757+/- 0.025
mean_var=62.1432+/-13.044, 0's: 0 Z-trim(111.6): 13 B-trim: 931 in 1/52
Lambda= 0.162696
statistics sampled from 20274 (20280) to 20274 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.611), E-opt: 0.2 (0.238), width: 16
Scan time: 6.220
The best scores are: opt bits E(85289)
NP_001130046 (OMIM: 604155) lanC-like protein 1 [H ( 399) 2767 658.3 9.5e-189
NP_001130047 (OMIM: 604155) lanC-like protein 1 [H ( 399) 2767 658.3 9.5e-189
NP_006046 (OMIM: 604155) lanC-like protein 1 [Homo ( 399) 2767 658.3 9.5e-189
XP_005246300 (OMIM: 604155) PREDICTED: lanC-like p ( 411) 2767 658.3 9.8e-189
NP_061167 (OMIM: 612919) lanC-like protein 2 [Homo ( 450) 1590 382.0 1.5e-105
>>NP_001130046 (OMIM: 604155) lanC-like protein 1 [Homo (399 aa)
initn: 2767 init1: 2767 opt: 2767 Z-score: 3509.6 bits: 658.3 E(85289): 9.5e-189
Smith-Waterman score: 2767; 100.0% identity (100.0% similar) in 399 aa overlap (1-399:1-399)
10 20 30 40 50 60
pF1KE3 MAQRAFPNPYADYNKSLAEGYFDAAGRLTPEFSQRLTNKIRELLQQMERGLKSADPRDGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAQRAFPNPYADYNKSLAEGYFDAAGRLTPEFSQRLTNKIRELLQQMERGLKSADPRDGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 GYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFLCGDAGPLAVAAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFLCGDAGPLAVAAVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 YHKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YHKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 QICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQGKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQGKL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 HSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 DAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLEYGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLEYGE
310 320 330 340 350 360
370 380 390
pF1KE3 HGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFEL
:::::::::::::::::::::::::::::::::::::::
NP_001 HGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFEL
370 380 390
>>NP_001130047 (OMIM: 604155) lanC-like protein 1 [Homo (399 aa)
initn: 2767 init1: 2767 opt: 2767 Z-score: 3509.6 bits: 658.3 E(85289): 9.5e-189
Smith-Waterman score: 2767; 100.0% identity (100.0% similar) in 399 aa overlap (1-399:1-399)
10 20 30 40 50 60
pF1KE3 MAQRAFPNPYADYNKSLAEGYFDAAGRLTPEFSQRLTNKIRELLQQMERGLKSADPRDGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAQRAFPNPYADYNKSLAEGYFDAAGRLTPEFSQRLTNKIRELLQQMERGLKSADPRDGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 GYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFLCGDAGPLAVAAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFLCGDAGPLAVAAVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 YHKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YHKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 QICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQGKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQGKL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 HSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 DAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLEYGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLEYGE
310 320 330 340 350 360
370 380 390
pF1KE3 HGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFEL
:::::::::::::::::::::::::::::::::::::::
NP_001 HGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFEL
370 380 390
>>NP_006046 (OMIM: 604155) lanC-like protein 1 [Homo sap (399 aa)
initn: 2767 init1: 2767 opt: 2767 Z-score: 3509.6 bits: 658.3 E(85289): 9.5e-189
Smith-Waterman score: 2767; 100.0% identity (100.0% similar) in 399 aa overlap (1-399:1-399)
10 20 30 40 50 60
pF1KE3 MAQRAFPNPYADYNKSLAEGYFDAAGRLTPEFSQRLTNKIRELLQQMERGLKSADPRDGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MAQRAFPNPYADYNKSLAEGYFDAAGRLTPEFSQRLTNKIRELLQQMERGLKSADPRDGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 GYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFLCGDAGPLAVAAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFLCGDAGPLAVAAVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 YHKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 YHKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 QICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQGKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQGKL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 HSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 HSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 DAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLEYGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLEYGE
310 320 330 340 350 360
370 380 390
pF1KE3 HGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFEL
:::::::::::::::::::::::::::::::::::::::
NP_006 HGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFEL
370 380 390
>>XP_005246300 (OMIM: 604155) PREDICTED: lanC-like prote (411 aa)
initn: 2767 init1: 2767 opt: 2767 Z-score: 3509.4 bits: 658.3 E(85289): 9.8e-189
Smith-Waterman score: 2767; 100.0% identity (100.0% similar) in 399 aa overlap (1-399:13-411)
10 20 30 40
pF1KE3 MAQRAFPNPYADYNKSLAEGYFDAAGRLTPEFSQRLTNKIRELLQQME
::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGLICTRLASGVMAQRAFPNPYADYNKSLAEGYFDAAGRLTPEFSQRLTNKIRELLQQME
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE3 RGLKSADPRDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RGLKSADPRDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFLC
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE3 GDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVNKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVNKN
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE3 FGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYL
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE3 MQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQ
250 260 270 280 290 300
290 300 310 320 330 340
pF1KE3 AYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRA
310 320 330 340 350 360
350 360 370 380 390
pF1KE3 CKFAEWCLEYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFEL
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CKFAEWCLEYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFEL
370 380 390 400 410
>>NP_061167 (OMIM: 612919) lanC-like protein 2 [Homo sap (450 aa)
initn: 1618 init1: 1176 opt: 1590 Z-score: 2015.8 bits: 382.0 E(85289): 1.5e-105
Smith-Waterman score: 1600; 54.2% identity (77.7% similar) in 426 aa overlap (1-399:19-444)
10 20
pF1KE3 MAQRAFPNPYADYNKS----LAEGY-----------------
: .::: ::. ::. . :: :
NP_061 MGETMSKRLKLHLGGEAEMEERAFVNPFPDYEAAAGALLASGAAEETGCVRPPATTDEPG
10 20 30 40 50 60
30 40 50 60 70
pF1KE3 --FDAAGRLTPEFSQRLTNKIRELLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLYDVF
: :.. .: .:. .::..::::::.:::.:::.: ..::::.:::.:::.:: :
NP_061 LPFHQDGKIIHNFIRRIQTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVT
70 80 90 100 110 120
80 90 100 110 120 130
pF1KE3 GDPAYLQLAHGYVKQSLNCLTKRSITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIH
: .:: . :::..: :. : .::::::::::::.::.:::. .. ....:.:.:..
NP_061 CDQTYLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVIYHKLRSDCESQECVTKLLQ
130 140 150 160 170 180
140 150 160 170 180 190
pF1KE3 LNKI----DPHAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQQICETILTSGENLAR
:.. . :.:.:::: ::.::::..: ..: . .: :... ..:. ::..:.:
NP_061 LQRSVVCQESDLPDELLYGRAGYLYALLYLNTEIGPGTVCESAIKEVVNAIIESGKTLSR
190 200 210 220 230 240
200 210 220 230 240 250
pF1KE3 KRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLK
.. : . ::.:.:... :::::::.:::::.::::. .:.: : .::::.::: . :
NP_061 EERKTERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYVRHKK
250 260 270 280 290 300
260 270 280 290 300 310
pF1KE3 FPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGLL
: ::::: .... : ::::::::::::.::.::::::.::::: .:..:.::::: :::
NP_061 FRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYLKEAMECSDVIWQRGLL
310 320 330 340 350 360
320 330 340 350 360 370
pF1KE3 KKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLEYGEHGCRTPDTPFSLFEG
.::::.:::.:::.:.::.:: :::: ::::::::::::::.:: :::: :: :.:::::
NP_061 RKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLDYGAHGCRIPDRPYSLFEG
370 380 390 400 410 420
380 390
pF1KE3 MAGTIYFLADLLVPTKARFPAFEL
:::.:.::.:.: : .:::::::
NP_061 MAGAIHFLSDVLGPETSRFPAFELDSSKRD
430 440 450
399 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 22:32:23 2016 done: Sun Nov 6 22:32:24 2016
Total Scan time: 6.220 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]