Result of FASTA (omim) for
pFN21AE3673
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3673, 370 aa
1>>>pF1KE3673 370 - 370 aa - 370 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7822+/-0.000407; mu= 14.3147+/- 0.025
mean_var=85.3373+/-17.879, 0's: 0 Z-trim(112.3): 234 B-trim: 415 in 1/54
Lambda= 0.138837
statistics sampled from 20892 (21164) to 20892 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.613), E-opt: 0.2 (0.248), width: 16
Scan time: 7.970
The best scores are: opt bits E(85289)
NP_073743 (OMIM: 612849) ubiquitin carboxyl-termin ( 366) 2190 448.8 8.9e-126
NP_001127695 (OMIM: 612849) ubiquitin carboxyl-ter ( 359) 2150 440.8 2.3e-123
XP_016864046 (OMIM: 612849) PREDICTED: ubiquitin c ( 341) 1988 408.4 1.3e-113
NP_001273696 (OMIM: 612849) ubiquitin carboxyl-ter ( 354) 1879 386.5 4.9e-107
NP_001273697 (OMIM: 612849) ubiquitin carboxyl-ter ( 225) 1280 266.4 4.4e-71
XP_016878211 (OMIM: 603158) PREDICTED: ubiquitin c ( 928) 421 94.8 8.6e-19
XP_016878210 (OMIM: 603158) PREDICTED: ubiquitin c ( 928) 421 94.8 8.6e-19
NP_001269978 (OMIM: 603158) ubiquitin carboxyl-ter (1012) 421 94.8 9.2e-19
XP_006720825 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 421 94.8 9.8e-19
XP_016878208 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 421 94.8 9.8e-19
XP_016878207 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 421 94.8 9.8e-19
XP_016878209 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 421 94.8 9.8e-19
XP_011520495 (OMIM: 603158) PREDICTED: ubiquitin c (1118) 421 94.8 1e-18
XP_006720824 (OMIM: 603158) PREDICTED: ubiquitin c (1118) 421 94.8 1e-18
NP_001122082 (OMIM: 603158) ubiquitin carboxyl-ter (1118) 421 94.8 1e-18
NP_005145 (OMIM: 603158) ubiquitin carboxyl-termin (1118) 421 94.8 1e-18
XP_016878257 (OMIM: 604728) PREDICTED: ubiquitin c ( 351) 311 72.5 1.7e-12
XP_016878256 (OMIM: 604728) PREDICTED: ubiquitin c ( 435) 311 72.5 2e-12
XP_016878255 (OMIM: 604728) PREDICTED: ubiquitin c ( 435) 311 72.5 2e-12
NP_001243631 (OMIM: 604728) ubiquitin carboxyl-ter ( 476) 311 72.6 2.2e-12
XP_016878252 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 311 72.6 2.2e-12
XP_016878254 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 311 72.6 2.2e-12
XP_016878253 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 311 72.6 2.2e-12
NP_006528 (OMIM: 604728) ubiquitin carboxyl-termin ( 520) 311 72.6 2.3e-12
XP_011523373 (OMIM: 612543) PREDICTED: ubiquitin c ( 739) 309 72.3 4.1e-12
XP_011523372 (OMIM: 612543) PREDICTED: ubiquitin c ( 914) 309 72.3 4.8e-12
XP_011523371 (OMIM: 612543) PREDICTED: ubiquitin c ( 925) 309 72.3 4.9e-12
XP_011523370 (OMIM: 612543) PREDICTED: ubiquitin c ( 959) 309 72.4 5e-12
XP_016880390 (OMIM: 612543) PREDICTED: ubiquitin c (1044) 309 72.4 5.4e-12
XP_005257599 (OMIM: 612543) PREDICTED: ubiquitin c (1123) 309 72.4 5.7e-12
XP_016880389 (OMIM: 612543) PREDICTED: ubiquitin c (1123) 309 72.4 5.7e-12
XP_005257600 (OMIM: 612543) PREDICTED: ubiquitin c (1123) 309 72.4 5.7e-12
NP_001308220 (OMIM: 612543) ubiquitin carboxyl-ter (1123) 309 72.4 5.7e-12
XP_011523367 (OMIM: 612543) PREDICTED: ubiquitin c (1124) 309 72.4 5.7e-12
XP_011523369 (OMIM: 612543) PREDICTED: ubiquitin c (1124) 309 72.4 5.7e-12
XP_011523368 (OMIM: 612543) PREDICTED: ubiquitin c (1124) 309 72.4 5.7e-12
NP_001273387 (OMIM: 602519) ubiquitin carboxyl-ter (1003) 292 69.0 5.5e-11
NP_001308787 (OMIM: 602519) ubiquitin carboxyl-ter (1044) 292 69.0 5.7e-11
XP_016879142 (OMIM: 602519) PREDICTED: ubiquitin c (1097) 292 69.0 5.9e-11
NP_003461 (OMIM: 602519) ubiquitin carboxyl-termin (1102) 292 69.0 5.9e-11
XP_016879141 (OMIM: 602519) PREDICTED: ubiquitin c (1113) 292 69.0 6e-11
XP_016874028 (OMIM: 604725) PREDICTED: ubiquitin c ( 352) 283 66.9 8.3e-11
NP_001230688 (OMIM: 604725) ubiquitin carboxyl-ter ( 362) 283 66.9 8.5e-11
NP_741994 (OMIM: 604725) ubiquitin carboxyl-termin ( 396) 283 66.9 9.1e-11
XP_005271778 (OMIM: 604725) PREDICTED: ubiquitin c ( 605) 283 67.0 1.3e-10
NP_004196 (OMIM: 604725) ubiquitin carboxyl-termin ( 605) 283 67.0 1.3e-10
XP_005271779 (OMIM: 604725) PREDICTED: ubiquitin c ( 605) 283 67.0 1.3e-10
NP_958804 (OMIM: 610186) ubiquitin carboxyl-termin ( 530) 280 66.4 1.7e-10
NP_001273386 (OMIM: 602519) ubiquitin carboxyl-ter (1086) 283 67.2 2e-10
NP_001014443 (OMIM: 604729) ubiquitin carboxyl-ter ( 565) 275 65.4 3.7e-10
>>NP_073743 (OMIM: 612849) ubiquitin carboxyl-terminal h (366 aa)
initn: 2242 init1: 2190 opt: 2190 Z-score: 2379.1 bits: 448.8 E(85289): 8.9e-126
Smith-Waterman score: 2190; 88.3% identity (96.2% similar) in 366 aa overlap (5-370:1-366)
10 20 30 40 50 60
pF1KE3 MEILMTVSKFASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFC
::: ..::::.::.:::::::.:::::::.::::::::::::::::::::::::::
NP_073 MTVRNIASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFC
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 RPFREKVLAYKSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNY
:::::.:::::.: .:::.::::::::::::::::::::::::::::.::::::.:::::
NP_073 RPFRENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNY
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 MQQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTWVDEIFQGTL
:::::::::::::::::::::::.:::::::.: :::... .:. :. ::: :::::::
NP_073 MQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE3 TNETRCLTCETISSKDEDFLDLSVDVEQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQ
:::::::.:::.::::::::::::::::::::::::: :::::::::: ::::: : :::
NP_073 TNETRCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQ
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE3 EAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMY
::.:::.::::::::::::::::::.::::::::::::::::::::::::.::.: ::::
NP_073 EAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMY
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE3 DLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSES
:::::::::::::::::::.::::: ::::::::::::::::::::::::::::::::::
NP_073 DLVAVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSES
300 310 320 330 340 350
370
pF1KE3 GYILFYQSRD
:::::::::.
NP_073 GYILFYQSRE
360
>>NP_001127695 (OMIM: 612849) ubiquitin carboxyl-termina (359 aa)
initn: 2183 init1: 2131 opt: 2150 Z-score: 2335.9 bits: 440.8 E(85289): 2.3e-123
Smith-Waterman score: 2150; 88.5% identity (96.1% similar) in 357 aa overlap (14-370:3-359)
10 20 30 40 50 60
pF1KE3 MEILMTVSKFASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFC
: .:.:::::::.:::::::.::::::::::::::::::::::::::
NP_001 MNCFQGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFC
10 20 30 40
70 80 90 100 110 120
pF1KE3 RPFREKVLAYKSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNY
:::::.:::::.: .:::.::::::::::::::::::::::::::::.::::::.:::::
NP_001 RPFRENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNY
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE3 MQQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTWVDEIFQGTL
:::::::::::::::::::::::.:::::::.: :::... .:. :. ::: :::::::
NP_001 MQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTL
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE3 TNETRCLTCETISSKDEDFLDLSVDVEQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQ
:::::::.:::.::::::::::::::::::::::::: :::::::::: ::::: : :::
NP_001 TNETRCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQ
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE3 EAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMY
::.:::.::::::::::::::::::.::::::::::::::::::::::::.::.: ::::
NP_001 EAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMY
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE3 DLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSES
:::::::::::::::::::.::::: ::::::::::::::::::::::::::::::::::
NP_001 DLVAVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSES
290 300 310 320 330 340
370
pF1KE3 GYILFYQSRD
:::::::::.
NP_001 GYILFYQSRE
350
>>XP_016864046 (OMIM: 612849) PREDICTED: ubiquitin carbo (341 aa)
initn: 1988 init1: 1988 opt: 1988 Z-score: 2160.9 bits: 408.4 E(85289): 1.3e-113
Smith-Waterman score: 1988; 87.4% identity (95.8% similar) in 333 aa overlap (5-337:1-333)
10 20 30 40 50 60
pF1KE3 MEILMTVSKFASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFC
::: ..::::.::.:::::::.:::::::.::::::::::::::::::::::::::
XP_016 MTVRNIASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFC
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 RPFREKVLAYKSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNY
:::::.:::::.: .:::.::::::::::::::::::::::::::::.::::::.:::::
XP_016 RPFRENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNY
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 MQQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTWVDEIFQGTL
:::::::::::::::::::::::.:::::::.: :::... .:. :. ::: :::::::
XP_016 MQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE3 TNETRCLTCETISSKDEDFLDLSVDVEQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQ
:::::::.:::.::::::::::::::::::::::::: :::::::::: ::::: : :::
XP_016 TNETRCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQ
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE3 EAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMY
::.:::.::::::::::::::::::.::::::::::::::::::::::::.::.: ::::
XP_016 EAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMY
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE3 DLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSES
:::::::::::::::::::.::::: :::::::::::
XP_016 DLVAVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEVGLQIILQ
300 310 320 330 340
370
pF1KE3 GYILFYQSRD
>>NP_001273696 (OMIM: 612849) ubiquitin carboxyl-termina (354 aa)
initn: 2139 init1: 1877 opt: 1879 Z-score: 2042.7 bits: 386.5 E(85289): 4.9e-107
Smith-Waterman score: 2065; 85.0% identity (92.9% similar) in 366 aa overlap (5-370:1-354)
10 20 30 40 50 60
pF1KE3 MEILMTVSKFASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFC
::: ..::::.::.:::::::.:::::::.::::::::: :::::
NP_001 MTVRNIASICNMGTNASALEKDIGPEQFPINEHYFGLVN------------ALYFC
10 20 30 40
70 80 90 100 110 120
pF1KE3 RPFREKVLAYKSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNY
:::::.:::::.: .:::.::::::::::::::::::::::::::::.::::::.:::::
NP_001 RPFRENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNY
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE3 MQQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTWVDEIFQGTL
:::::::::::::::::::::::.:::::::.: :::... .:. :. ::: :::::::
NP_001 MQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTL
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE3 TNETRCLTCETISSKDEDFLDLSVDVEQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQ
:::::::.:::.::::::::::::::::::::::::: :::::::::: ::::: : :::
NP_001 TNETRCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQ
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE3 EAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMY
::.:::.::::::::::::::::::.::::::::::::::::::::::::.::.: ::::
NP_001 EAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMY
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE3 DLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSES
:::::::::::::::::::.::::: ::::::::::::::::::::::::::::::::::
NP_001 DLVAVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSES
290 300 310 320 330 340
370
pF1KE3 GYILFYQSRD
:::::::::.
NP_001 GYILFYQSRE
350
>>NP_001273697 (OMIM: 612849) ubiquitin carboxyl-termina (225 aa)
initn: 1280 init1: 1280 opt: 1280 Z-score: 1397.1 bits: 266.4 E(85289): 4.4e-71
Smith-Waterman score: 1280; 87.1% identity (94.5% similar) in 217 aa overlap (121-337:1-217)
100 110 120 130 140 150
pF1KE3 IATQKKKVGVIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNTIADILQEERKQEKQN
:::::::::::::::::::::::.::::::
NP_001 MQQDAHEFLNYLLNTIADILQEEKKQEKQN
10 20 30
160 170 180 190 200 210
pF1KE3 GRLPNGNIDNENNNSTPDPTWVDEIFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNT
:.: :::... .:. :. ::: ::::::::::::::.:::.::::::::::::::::::
NP_001 GKLKNGNMNEPAENNKPELTWVHEIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNT
40 50 60 70 80 90
220 230 240 250 260 270
pF1KE3 SITHCLRGFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHR
::::::: :::::::::: ::::: : :::::.:::.::::::::::::::::::.::::
NP_001 SITHCLRDFSNTETLCSEQKYYCETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHR
100 110 120 130 140 150
280 290 300 310 320 330
pF1KE3 YTKLSYRVVFPLELRLFNTSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKSHDFWLL
::::::::::::::::::::.::.: :::::::::::::::::::::::.::::: ::::
NP_001 YTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGFWLL
160 170 180 190 200 210
340 350 360 370
pF1KE3 FDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQSRD
:::::::
NP_001 FDDDIVEVGLQIILQ
220
>>XP_016878211 (OMIM: 603158) PREDICTED: ubiquitin carbo (928 aa)
initn: 252 init1: 177 opt: 421 Z-score: 458.3 bits: 94.8 E(85289): 8.6e-19
Smith-Waterman score: 469; 31.0% identity (57.1% similar) in 352 aa overlap (40-368:588-918)
10 20 30 40 50 60
pF1KE3 FASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQAL--------YFCR
:: :.::::: ::.:: : :: :
XP_016 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNR
560 570 580 590 600 610
70 80 90 100 110 120
pF1KE3 PFREKVLAYKSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNYM
. . .. .: . .. ..... : . . : :: : . : :. : .:
XP_016 NCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRY--ISPKDFKITIGKINDQFAGYS
620 630 640 650 660 670
130 140 150 160 170
pF1KE3 QQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTW-----VDE--
:::..:.: .:. : :.:. .. . : . : :. .. .. . .: ..:
XP_016 QQDSQELLLFLM----DGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESI
680 690 700 710 720 730
180 190 200 210 220
pF1KE3 ---IFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSIT--HCLRGFSNTETLCSEY
.::: . . ..::::. : : :. ::. . .... : ::: ::. : : ..
XP_016 IVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNN
740 750 760 770 780 790
230 240 250 260 270 280
pF1KE3 KYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLE-LRLFN
..:: .::..... :.... ::: .: .:::::.: . .. ::. : :::: : : .
XP_016 RFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ--KLQTSVDFPLENLDLSQ
800 810 820 830 840
290 300 310 320 330 340
pF1KE3 TSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKS--HDFWLLFDDDIVEKIDAQAIEE
: . :.: .: : : : . ::: : :. .. :. ::: : :......
XP_016 YVIGPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK-
850 860 870 880 890 900
350 360 370
pF1KE3 FYGLTSDISKNSESGYILFYQSRD
: ..::::: :
XP_016 -----------SSAAYILFYTSLGPRVTDVAT
910 920
>>XP_016878210 (OMIM: 603158) PREDICTED: ubiquitin carbo (928 aa)
initn: 252 init1: 177 opt: 421 Z-score: 458.3 bits: 94.8 E(85289): 8.6e-19
Smith-Waterman score: 469; 31.0% identity (57.1% similar) in 352 aa overlap (40-368:588-918)
10 20 30 40 50 60
pF1KE3 FASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQAL--------YFCR
:: :.::::: ::.:: : :: :
XP_016 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNR
560 570 580 590 600 610
70 80 90 100 110 120
pF1KE3 PFREKVLAYKSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNYM
. . .. .: . .. ..... : . . : :: : . : :. : .:
XP_016 NCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRY--ISPKDFKITIGKINDQFAGYS
620 630 640 650 660 670
130 140 150 160 170
pF1KE3 QQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTW-----VDE--
:::..:.: .:. : :.:. .. . : . : :. .. .. . .: ..:
XP_016 QQDSQELLLFLM----DGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESI
680 690 700 710 720 730
180 190 200 210 220
pF1KE3 ---IFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSIT--HCLRGFSNTETLCSEY
.::: . . ..::::. : : :. ::. . .... : ::: ::. : : ..
XP_016 IVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNN
740 750 760 770 780 790
230 240 250 260 270 280
pF1KE3 KYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLE-LRLFN
..:: .::..... :.... ::: .: .:::::.: . .. ::. : :::: : : .
XP_016 RFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ--KLQTSVDFPLENLDLSQ
800 810 820 830 840
290 300 310 320 330 340
pF1KE3 TSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKS--HDFWLLFDDDIVEKIDAQAIEE
: . :.: .: : : : . ::: : :. .. :. ::: : :......
XP_016 YVIGPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK-
850 860 870 880 890 900
350 360 370
pF1KE3 FYGLTSDISKNSESGYILFYQSRD
: ..::::: :
XP_016 -----------SSAAYILFYTSLGPRVTDVAT
910 920
>>NP_001269978 (OMIM: 603158) ubiquitin carboxyl-termina (1012 aa)
initn: 252 init1: 177 opt: 421 Z-score: 457.8 bits: 94.8 E(85289): 9.2e-19
Smith-Waterman score: 469; 31.0% identity (57.1% similar) in 352 aa overlap (40-368:672-1002)
10 20 30 40 50 60
pF1KE3 FASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQAL--------YFCR
:: :.::::: ::.:: : :: :
NP_001 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNR
650 660 670 680 690 700
70 80 90 100 110 120
pF1KE3 PFREKVLAYKSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNYM
. . .. .: . .. ..... : . . : :: : . : :. : .:
NP_001 NCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRY--ISPKDFKITIGKINDQFAGYS
710 720 730 740 750
130 140 150 160 170
pF1KE3 QQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTW-----VDE--
:::..:.: .:. : :.:. .. . : . : :. .. .. . .: ..:
NP_001 QQDSQELLLFLM----DGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESI
760 770 780 790 800 810
180 190 200 210 220
pF1KE3 ---IFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSIT--HCLRGFSNTETLCSEY
.::: . . ..::::. : : :. ::. . .... : ::: ::. : : ..
NP_001 IVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNN
820 830 840 850 860 870
230 240 250 260 270 280
pF1KE3 KYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLE-LRLFN
..:: .::..... :.... ::: .: .:::::.: . .. ::. : :::: : : .
NP_001 RFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ--KLQTSVDFPLENLDLSQ
880 890 900 910 920 930
290 300 310 320 330 340
pF1KE3 TSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKS--HDFWLLFDDDIVEKIDAQAIEE
: . :.: .: : : : . ::: : :. .. :. ::: : :......
NP_001 YVIGPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK-
940 950 960 970 980 990
350 360 370
pF1KE3 FYGLTSDISKNSESGYILFYQSRD
: ..::::: :
NP_001 -----------SSAAYILFYTSLGPRVTDVAT
1000 1010
>>XP_006720825 (OMIM: 603158) PREDICTED: ubiquitin carbo (1089 aa)
initn: 252 init1: 177 opt: 421 Z-score: 457.3 bits: 94.8 E(85289): 9.8e-19
Smith-Waterman score: 469; 31.0% identity (57.1% similar) in 352 aa overlap (40-368:749-1079)
10 20 30 40 50 60
pF1KE3 FASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQAL--------YFCR
:: :.::::: ::.:: : :: :
XP_006 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNR
720 730 740 750 760 770
70 80 90 100 110 120
pF1KE3 PFREKVLAYKSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNYM
. . .. .: . .. ..... : . . : :: : . : :. : .:
XP_006 NCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRY--ISPKDFKITIGKINDQFAGYS
780 790 800 810 820 830
130 140 150 160 170
pF1KE3 QQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTW-----VDE--
:::..:.: .:. : :.:. .. . : . : :. .. .. . .: ..:
XP_006 QQDSQELLLFLM----DGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESI
840 850 860 870 880 890
180 190 200 210 220
pF1KE3 ---IFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSIT--HCLRGFSNTETLCSEY
.::: . . ..::::. : : :. ::. . .... : ::: ::. : : ..
XP_006 IVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNN
900 910 920 930 940 950
230 240 250 260 270 280
pF1KE3 KYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLE-LRLFN
..:: .::..... :.... ::: .: .:::::.: . .. ::. : :::: : : .
XP_006 RFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ--KLQTSVDFPLENLDLSQ
960 970 980 990 1000 1010
290 300 310 320 330 340
pF1KE3 TSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKS--HDFWLLFDDDIVEKIDAQAIEE
: . :.: .: : : : . ::: : :. .. :. ::: : :......
XP_006 YVIGPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK-
1020 1030 1040 1050 1060
350 360 370
pF1KE3 FYGLTSDISKNSESGYILFYQSRD
: ..::::: :
XP_006 -----------SSAAYILFYTSLGPRVTDVAT
1070 1080
>>XP_016878208 (OMIM: 603158) PREDICTED: ubiquitin carbo (1089 aa)
initn: 252 init1: 177 opt: 421 Z-score: 457.3 bits: 94.8 E(85289): 9.8e-19
Smith-Waterman score: 469; 31.0% identity (57.1% similar) in 352 aa overlap (40-368:749-1079)
10 20 30 40 50 60
pF1KE3 FASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQAL--------YFCR
:: :.::::: ::.:: : :: :
XP_016 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNR
720 730 740 750 760 770
70 80 90 100 110 120
pF1KE3 PFREKVLAYKSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNYM
. . .. .: . .. ..... : . . : :: : . : :. : .:
XP_016 NCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRY--ISPKDFKITIGKINDQFAGYS
780 790 800 810 820 830
130 140 150 160 170
pF1KE3 QQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTW-----VDE--
:::..:.: .:. : :.:. .. . : . : :. .. .. . .: ..:
XP_016 QQDSQELLLFLM----DGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESI
840 850 860 870 880 890
180 190 200 210 220
pF1KE3 ---IFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSIT--HCLRGFSNTETLCSEY
.::: . . ..::::. : : :. ::. . .... : ::: ::. : : ..
XP_016 IVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNN
900 910 920 930 940 950
230 240 250 260 270 280
pF1KE3 KYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLE-LRLFN
..:: .::..... :.... ::: .: .:::::.: . .. ::. : :::: : : .
XP_016 RFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ--KLQTSVDFPLENLDLSQ
960 970 980 990 1000 1010
290 300 310 320 330 340
pF1KE3 TSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKS--HDFWLLFDDDIVEKIDAQAIEE
: . :.: .: : : : . ::: : :. .. :. ::: : :......
XP_016 YVIGPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK-
1020 1030 1040 1050 1060
350 360 370
pF1KE3 FYGLTSDISKNSESGYILFYQSRD
: ..::::: :
XP_016 -----------SSAAYILFYTSLGPRVTDVAT
1070 1080
370 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 22:37:21 2016 done: Sun Nov 6 22:37:22 2016
Total Scan time: 7.970 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]