FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3663, 196 aa
  1>>>pF1KE3663 196 - 196 aa - 196 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3644+/-0.000618; mu= 9.9353+/- 0.038
 mean_var=110.6931+/-21.952, 0's: 0 Z-trim(115.4): 15  B-trim: 0 in 0/53
 Lambda= 0.121903
 statistics sampled from 15985 (15999) to 15985 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.822), E-opt: 0.2 (0.491), width:  16
 Scan time:  2.350

The best scores are:                                      opt bits E(32554)
CCDS9189.1 HSPB8 gene_id:26353|Hs108|chr12         ( 196) 1382 252.5 1.2e-67
CCDS5583.1 HSPB1 gene_id:3315|Hs108|chr7           ( 205)  395 78.9 2.3e-15


>>CCDS9189.1 HSPB8 gene_id:26353|Hs108|chr12              (196 aa)
 initn: 1382 init1: 1382 opt: 1382  Z-score: 1327.7  bits: 252.5 E(32554): 1.2e-67
Smith-Waterman score: 1382; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196)

               10        20        30        40        50        60
pF1KE3 MADGQMPFSCHYPSRLRRDPFRDSPLSSRLLDDGFGMDPFPDDLTASWPDWALPRLSSAW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MADGQMPFSCHYPSRLRRDPFRDSPLSSRLLDDGFGMDPFPDDLTASWPDWALPRLSSAW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 PGTLRSGMVPRGPTATARFGVPAEGRTPPPFPGEPWKVCVNVHSFKPEELMVKTKDGYVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 PGTLRSGMVPRGPTATARFGVPAEGRTPPPFPGEPWKVCVNVHSFKPEELMVKTKDGYVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 VSGKHEEKQQEGGIVSKNFTKKIQLPAEVDPVTVFASLSPEGLLIIEAPQVPPYSTFGES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 VSGKHEEKQQEGGIVSKNFTKKIQLPAEVDPVTVFASLSPEGLLIIEAPQVPPYSTFGES
              130       140       150       160       170       180

              190      
pF1KE3 SFNNELPQDSQEVTCT
       ::::::::::::::::
CCDS91 SFNNELPQDSQEVTCT
              190      

>>CCDS5583.1 HSPB1 gene_id:3315|Hs108|chr7                (205 aa)
 initn: 441 init1: 303 opt: 395  Z-score: 389.3  bits: 78.9 E(32554): 2.3e-15
Smith-Waterman score: 405; 39.6% identity (62.0% similar) in 187 aa overlap (1-176:1-174)

               10         20        30        40        50         
pF1KE3 MADGQMPFSC-HYPSRLRRDPFRDSPLSSRLLDDGFGMDPFPDDLTASWPDWALPRLSSA
       :.. ..:::  . ::    :::::    :::.:..::.  .:..    : .:     .:.
CCDS55 MTERRVPFSLLRGPSW---DPFRDWYPHSRLFDQAFGLPRLPEE----WSQWL---GGSS
               10           20        30        40               50

      60        70        80                  90       100         
pF1KE3 WPGTLRSGMVPRGPTATARFGVPAEGR----------TPPPFPGEPWKVCVNVHSFKPEE
       ::: .:   .: .   .   ..:: .:          .     .. :.: ..:. : :.:
CCDS55 WPGYVRP--LPPAAIESPAVAAPAYSRALSRQLSSGVSEIRHTADRWRVSLDVNHFAPDE
                 60        70        80        90       100        

     110       120       130       140       150       160         
pF1KE3 LMVKTKDGYVEVSGKHEEKQQEGGIVSKNFTKKIQLPAEVDPVTVFASLSPEGLLIIEAP
       : :::::: ::..:::::.:.: : .:. ::.:  ::  :::. : .:::::: : .:::
CCDS55 LTVKTKDGVVEITGKHEERQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAP
      110       120       130       140       150       160        

     170       180       190                 
pF1KE3 QVPPYSTFGESSFNNELPQDSQEVTCT           
        .:  .:                               
CCDS55 -MPKLATQSNEITIPVTFESRAQLGGPEAAKSDETAAK
       170       180       190       200     




196 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:37:01 2016 done: Mon Nov  7 02:37:02 2016
 Total Scan time:  2.350 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]