FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3659, 175 aa
  1>>>pF1KE3659 175 - 175 aa - 175 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9386+/-0.0006; mu= 15.1898+/- 0.036
 mean_var=69.5410+/-13.923, 0's: 0 Z-trim(112.7): 6  B-trim: 0 in 0/53
 Lambda= 0.153799
 statistics sampled from 13439 (13444) to 13439 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.413), width:  16
 Scan time:  1.690

The best scores are:                                      opt bits E(32554)
CCDS11437.1 RAMP2 gene_id:10266|Hs108|chr17        ( 175) 1214 277.3 3.2e-75
CCDS77546.1 RAMP1 gene_id:10267|Hs108|chr2         ( 126)  248 62.9 8.4e-11
CCDS5503.1 RAMP3 gene_id:10268|Hs108|chr7          ( 148)  248 63.0 9.5e-11
CCDS2522.1 RAMP1 gene_id:10267|Hs108|chr2          ( 148)  248 63.0 9.5e-11


>>CCDS11437.1 RAMP2 gene_id:10266|Hs108|chr17             (175 aa)
 initn: 1214 init1: 1214 opt: 1214  Z-score: 1463.9  bits: 277.3 E(32554): 3.2e-75
Smith-Waterman score: 1214; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175)

               10        20        30        40        50        60
pF1KE3 MASLRVERAGGPRLPRTRVGRPAALRLLLLLGAVLNPHEALAQPLPTTGTPGSEGGTVKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MASLRVERAGGPRLPRTRVGRPAALRLLLLLGAVLNPHEALAQPLPTTGTPGSEGGTVKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 YETAVQFCWNHYKDQMDPIEKDWCDWAMISRPYSTLRDCLEHFAELFDLGFPNPLAERII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YETAVQFCWNHYKDQMDPIEKDWCDWAMISRPYSTLRDCLEHFAELFDLGFPNPLAERII
               70        80        90       100       110       120

              130       140       150       160       170     
pF1KE3 FETHQIHFANCSLVQPTFSDPPEDVLLAMIIAPICLIPFLITLVVWRSKDSEAQA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FETHQIHFANCSLVQPTFSDPPEDVLLAMIIAPICLIPFLITLVVWRSKDSEAQA
              130       140       150       160       170     

>>CCDS77546.1 RAMP1 gene_id:10267|Hs108|chr2              (126 aa)
 initn: 256 init1: 230 opt: 248  Z-score: 307.4  bits: 62.9 E(32554): 8.4e-11
Smith-Waterman score: 248; 32.4% identity (63.9% similar) in 108 aa overlap (66-172:16-123)

          40        50        60        70         80        90    
pF1KE3 NPHEALAQPLPTTGTPGSEGGTVKNYETAVQFCWNHYKDQMDPI-EKDWCDWAMISRPYS
                                     ..: .... .:. . :  ::::.   : : 
CCDS77                MTTACQEANYGALLRELCLTQFQVDMEAVGETLWCDWGRTIRSYR
                              10        20        30        40     

          100       110       120       130       140       150    
pF1KE3 TLRDCLEHFAELFDLGFPNPLAERIIFETHQIHFANCSLVQPTFSDPPEDVLLAMIIAPI
        : ::  :.:: .   .::  ..:... .:  .: .: .   .  ::: ..:  .:..::
CCDS77 ELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSILYPFIVVPI
          50        60        70        80        90       100     

          160       170     
pF1KE3 CLIPFLITLVVWRSKDSEAQA
        .  .. .::::.:: .:   
CCDS77 TVTLLVTALVVWQSKRTEGIV
         110       120      

>>CCDS5503.1 RAMP3 gene_id:10268|Hs108|chr7               (148 aa)
 initn: 285 init1: 224 opt: 248  Z-score: 306.5  bits: 63.0 E(32554): 9.5e-11
Smith-Waterman score: 248; 28.9% identity (56.3% similar) in 142 aa overlap (32-172:4-145)

              10        20        30        40        50        60 
pF1KE3 ASLRVERAGGPRLPRTRVGRPAALRLLLLLGAVLNPHEALAQPLPTTGTPGSEGGTVKNY
                                     ::.  :.      :   : : . : .  ..
CCDS55                            METGALRRPQLLPLLLLLCGGCPRAGGCNETGM
                                          10        20        30   

              70        80         90       100       110       120
pF1KE3 ETAVQFCWNHYKDQMDPIEK-DWCDWAMISRPYSTLRDCLEHFAELFDLGFPNPLAERII
          . .: . . :.:  ..   ::. . .   : .. .: :  :..    .:::::. .:
CCDS55 LERLPLCGKAFADMMGKVDVWKWCNLSEFIVYYESFTNCTEMEANVVGCYWPNPLAQGFI
            40        50        60        70        80        90   

              130       140       150       160       170     
pF1KE3 FETHQIHFANCSLVQPTFSDPPEDVLLAMIIAPICLIPFLITLVVWRSKDSEAQA
          :.  :.::.. .  . :::..::. .:. :. :   .  ::::::: ..   
CCDS55 TGIHRQFFSNCTVDRVHLEDPPDEVLIPLIVIPVVLTVAMAGLVVWRSKRTDTLL
           100       110       120       130       140        

>>CCDS2522.1 RAMP1 gene_id:10267|Hs108|chr2               (148 aa)
 initn: 259 init1: 230 opt: 248  Z-score: 306.5  bits: 63.0 E(32554): 9.5e-11
Smith-Waterman score: 248; 32.4% identity (63.9% similar) in 108 aa overlap (66-172:38-145)

          40        50        60        70         80        90    
pF1KE3 NPHEALAQPLPTTGTPGSEGGTVKNYETAVQFCWNHYKDQMDPI-EKDWCDWAMISRPYS
                                     ..: .... .:. . :  ::::.   : : 
CCDS25 LPRRGLWLLLAHHLFMTTACQEANYGALLRELCLTQFQVDMEAVGETLWCDWGRTIRSYR
        10        20        30        40        50        60       

          100       110       120       130       140       150    
pF1KE3 TLRDCLEHFAELFDLGFPNPLAERIIFETHQIHFANCSLVQPTFSDPPEDVLLAMIIAPI
        : ::  :.:: .   .::  ..:... .:  .: .: .   .  ::: ..:  .:..::
CCDS25 ELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSILYPFIVVPI
        70        80        90       100       110       120       

          160       170     
pF1KE3 CLIPFLITLVVWRSKDSEAQA
        .  .. .::::.:: .:   
CCDS25 TVTLLVTALVVWQSKRTEGIV
       130       140        




175 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:23:00 2016 done: Mon Nov  7 00:23:00 2016
 Total Scan time:  1.690 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]