FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3649, 437 aa
  1>>>pF1KE3649 437 - 437 aa - 437 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1252+/-0.00072; mu= 18.6174+/- 0.044
 mean_var=66.1326+/-13.144, 0's: 0 Z-trim(109.8): 12  B-trim: 4 in 1/50
 Lambda= 0.157713
 statistics sampled from 11166 (11171) to 11166 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.343), width:  16
 Scan time:  3.130

The best scores are:                                      opt bits E(32554)
CCDS9769.1 FNTB gene_id:2342|Hs108|chr14           ( 437) 3048 702.1 2.7e-202
CCDS669.1 RABGGTB gene_id:5876|Hs108|chr1          ( 331)  421 104.3 1.9e-22
CCDS4116.1 PGGT1B gene_id:5229|Hs108|chr5          ( 377)  337 85.2 1.2e-16


>>CCDS9769.1 FNTB gene_id:2342|Hs108|chr14                (437 aa)
 initn: 3048 init1: 3048 opt: 3048  Z-score: 3745.2  bits: 702.1 E(32554): 2.7e-202
Smith-Waterman score: 3048; 100.0% identity (100.0% similar) in 437 aa overlap (1-437:1-437)

               10        20        30        40        50        60
pF1KE3 MASPSSFTYYCPPSSSPVWSEPLYSLRPEHARERLQDDSVETVTSIEQAKVEEKIQEVFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MASPSSFTYYCPPSSSPVWSEPLYSLRPEHARERLQDDSVETVTSIEQAKVEEKIQEVFS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 SYKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYECLDASRPWLCYWILHSLELLDEPIPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 SYKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYECLDASRPWLCYWILHSLELLDEPIPQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 IVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 IVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 LYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 LYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 GVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 GVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 SFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 SFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 YHTCYCLSGLSIAQHFGSGAMLHDVVLGVPENALQPTHPVYNIGPDKVIQATTYFLQKPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 YHTCYCLSGLSIAQHFGSGAMLHDVVLGVPENALQPTHPVYNIGPDKVIQATTYFLQKPV
              370       380       390       400       410       420

              430       
pF1KE3 PGFEELKDETSAEPATD
       :::::::::::::::::
CCDS97 PGFEELKDETSAEPATD
              430       

>>CCDS669.1 RABGGTB gene_id:5876|Hs108|chr1               (331 aa)
 initn: 490 init1: 209 opt: 421  Z-score: 516.6  bits: 104.3 E(32554): 1.9e-22
Smith-Waterman score: 521; 29.9% identity (59.5% similar) in 338 aa overlap (76-410:21-321)

          50        60        70        80         90         100  
pF1KE3 IEQAKVEEKIQEVFSSYKFNHLVPRLVLQREKHFHYL-KRGLRQLTDAYE-CLDAS-RPW
                                     :::  :. . : ..  : :: :..   :  
CCDS66           MGTPQKDVIIKSDAPDTLLLEKHADYIASYGSKK--DDYEYCMSEYLRMS
                         10        20        30          40        

            110       120       130       140       150       160  
pF1KE3 LCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCI
         :: :  ..:. . . ..   ..  :.. ::   ::.... :. :::  : .::. : .
CCDS66 GIYWGLTVMDLMGQ-LHRMNREEILAFIKSCQHECGGISASIGHDPHLLYTLSAVQILTL
       50        60         70        80        90       100       

            170       180       190       200       210       220  
pF1KE3 IGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLF
           .. ..:. .:...:. .:.. ::::   . ::.:.: ..::... .: . .     
CCDS66 Y---DSINVIDVNKVVEYVKGLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINV
          110       120       130       140       150       160    

            230       240       250       260       270       280  
pF1KE3 EGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQM
       : . :..  :.:..::.:  :: :.:.:  .:  . :.: .. ...:   :  :.  ::.
CCDS66 EKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQL
          170       180       190       200       210       220    

            290       300       310       320       330       340  
pF1KE3 RFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMC
          ::..:: .:: : :::.:  . : .. :             ::.  .. :...:: :
CCDS66 P-SGGLNGRPEKLPDVCYSWWVLASLKIIGRL------------HWI-DREKLRNFILAC
           230       240       250                    260       270

            350       360       370       380       390       400  
pF1KE3 CQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGAMLHDVVLGVPENALQPTHPVYN
        .  .::. :.::   : .:: . ..:::.              ::  :. ..:..::. 
CCDS66 QDEETGGFADRPGDMVDPFHTLFGIAGLSL--------------LG--EEQIKPVNPVFC
              280       290       300                       310    

            410       420       430       
pF1KE3 IGPDKVIQATTYFLQKPVPGFEELKDETSAEPATD
       . :..:.:                           
CCDS66 M-PEEVLQRVNVQPELVS                 
           320       330                  

>>CCDS4116.1 PGGT1B gene_id:5229|Hs108|chr5               (377 aa)
 initn: 324 init1: 132 opt: 337  Z-score: 412.5  bits: 85.2 E(32554): 1.2e-16
Smith-Waterman score: 392; 28.4% identity (55.6% similar) in 338 aa overlap (70-377:17-336)

      40        50        60        70        80        90         
pF1KE3 VETVTSIEQAKVEEKIQEVFSSYKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYECLDAS
                                     :: . :..: ....: :. : . :  :..:
CCDS41               MAATEDERLAGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETS
                             10        20        30        40      

     100       110               120       130       140           
pF1KE3 RPWLCYWILHSLELLD--------EPIPQIVATDVCQFLELCQSPEGGFGGG--------
       :  . .. : .:..::        . :  : . .:    .  .  . :: :.        
CCDS41 RLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLNRCGFRGSSYLGIPFN
         50        60        70        80        90       100      

                    150       160       170       180       190    
pF1KE3 PGQYP---------HLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFL-M
       :.. :         :.: ::.... : :.: . .   .:.:  :  : .:.  ::::  .
CCDS41 PSKAPGTAHPYDSGHIAMTYTGLSCLVILGDDLSR--VNKEACLAGLRALQLEDGSFCAV
        110       120       130       140         150       160    

           200       210       220       230       240       250   
pF1KE3 HVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTF
         :.: :.: .:::. .  . :  .   .. .  .: : .....:..   :.:.::: ::
CCDS41 PEGSENDMRFVYCASCICYMLNNWSGMDMKKAITYIRRSMSYDNGLAQGAGLESHGGSTF
          170       180       190       200       210       220    

           260        270          280       290       300         
pF1KE3 CGLAALVIL-KRERSLNLKSL---LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLP
       ::.:.: .. : :. .. : :    .:   ::   ..:..:: :: :: ::::: .. : 
CCDS41 CGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ---QNGYHGRPNKPVDTCYSFWVGATLK
          230       240       250          260       270       280 

     310       320       330       340       350       360         
pF1KE3 LLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSG
       ::.            ...  :...  ..:::   .  .::.   : .  :  :. . . :
CCDS41 LLK-----------IFQYTNFEKN--RNYILSTQDRLVGGFAKWPDSHPDALHAYFGICG
                        290         300       310       320        

     370       380       390       400       410       420         
pF1KE3 LSIAQHFGSGAMLHDVVLGVPENALQPTHPVYNIGPDKVIQATTYFLQKPVPGFEELKDE
       ::. .. :                                                    
CCDS41 LSLMEESGICKVHPALNVSTRTSERLLDLHQSWKTKDSKQCSENVHIST           
      330       340       350       360       370                  




437 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:46:11 2016 done: Mon Nov  7 00:46:11 2016
 Total Scan time:  3.130 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]