Result of FASTA (omim) for
pFN21AE3645
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3645, 74 aa
1>>>pF1KE3645 74 - 74 aa - 74 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8089+/-0.000244; mu= 10.6680+/- 0.015
mean_var=62.5783+/-12.330, 0's: 0 Z-trim(122.0): 42 B-trim: 62 in 1/52
Lambda= 0.162130
statistics sampled from 39340 (39382) to 39340 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.837), E-opt: 0.2 (0.462), width: 16
Scan time: 4.090
The best scores are: opt bits E(85289)
NP_001316355 (OMIM: 189970) guanine nucleotide-bin ( 74) 490 121.6 1.1e-28
NP_068774 (OMIM: 189970) guanine nucleotide-bindin ( 74) 490 121.6 1.1e-28
NP_004117 (OMIM: 604390) guanine nucleotide-bindin ( 73) 380 95.9 6.2e-21
NP_001185685 (OMIM: 139391) guanine nucleotide-bin ( 69) 294 75.8 6.7e-15
NP_113686 (OMIM: 139391) guanine nucleotide-bindin ( 69) 294 75.8 6.7e-15
NP_001185683 (OMIM: 139391) guanine nucleotide-bin ( 69) 294 75.8 6.7e-15
NP_001185684 (OMIM: 139391) guanine nucleotide-bin ( 69) 294 75.8 6.7e-15
NP_061329 (OMIM: 615405) guanine nucleotide-bindin ( 72) 158 44.0 2.6e-05
XP_016857298 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 158 44.0 2.6e-05
XP_016857299 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 158 44.0 2.6e-05
XP_016857300 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 158 44.0 2.6e-05
XP_016882095 (OMIM: 604430) PREDICTED: guanine nuc ( 68) 152 42.6 6.6e-05
NP_443079 (OMIM: 604430) guanine nucleotide-bindin ( 68) 152 42.6 6.6e-05
XP_006720236 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 152 42.6 6.9e-05
XP_016876866 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 152 42.6 6.9e-05
NP_001230702 (OMIM: 606981) guanine nucleotide-bin ( 71) 152 42.6 6.9e-05
NP_444292 (OMIM: 606981) guanine nucleotide-bindin ( 71) 152 42.6 6.9e-05
XP_016876865 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 152 42.6 6.9e-05
XP_011535148 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 152 42.6 6.9e-05
NP_001230703 (OMIM: 606981) guanine nucleotide-bin ( 71) 152 42.6 6.9e-05
NP_036334 (OMIM: 608941) guanine nucleotide-bindin ( 75) 147 41.4 0.00016
XP_006718563 (OMIM: 608941) PREDICTED: guanine nuc ( 75) 147 41.4 0.00016
NP_001092191 (OMIM: 604388) guanine nucleotide-bin ( 75) 142 40.2 0.00036
XP_006711824 (OMIM: 604388) PREDICTED: guanine nuc ( 75) 142 40.2 0.00036
NP_004476 (OMIM: 604388) guanine nucleotide-bindin ( 75) 142 40.2 0.00036
XP_011542469 (OMIM: 604388) PREDICTED: guanine nuc ( 75) 142 40.2 0.00036
NP_001092192 (OMIM: 604388) guanine nucleotide-bin ( 75) 142 40.2 0.00036
NP_001017998 (OMIM: 604389) guanine nucleotide-bin ( 68) 129 37.2 0.0028
NP_001185593 (OMIM: 604389) guanine nucleotide-bin ( 68) 129 37.2 0.0028
>>NP_001316355 (OMIM: 189970) guanine nucleotide-binding (74 aa)
initn: 490 init1: 490 opt: 490 Z-score: 635.8 bits: 121.6 E(85289): 1.1e-28
Smith-Waterman score: 490; 100.0% identity (100.0% similar) in 74 aa overlap (1-74:1-74)
10 20 30 40 50 60
pF1KE3 MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEVRDYVEERSGEDPLVKGIPED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEVRDYVEERSGEDPLVKGIPED
10 20 30 40 50 60
70
pF1KE3 KNPFKELKGGCVIS
::::::::::::::
NP_001 KNPFKELKGGCVIS
70
>>NP_068774 (OMIM: 189970) guanine nucleotide-binding pr (74 aa)
initn: 490 init1: 490 opt: 490 Z-score: 635.8 bits: 121.6 E(85289): 1.1e-28
Smith-Waterman score: 490; 100.0% identity (100.0% similar) in 74 aa overlap (1-74:1-74)
10 20 30 40 50 60
pF1KE3 MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEVRDYVEERSGEDPLVKGIPED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEVRDYVEERSGEDPLVKGIPED
10 20 30 40 50 60
70
pF1KE3 KNPFKELKGGCVIS
::::::::::::::
NP_068 KNPFKELKGGCVIS
70
>>NP_004117 (OMIM: 604390) guanine nucleotide-binding pr (73 aa)
initn: 378 init1: 350 opt: 380 Z-score: 496.8 bits: 95.9 E(85289): 6.2e-21
Smith-Waterman score: 380; 75.7% identity (93.2% similar) in 74 aa overlap (1-74:1-73)
10 20 30 40 50 60
pF1KE3 MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEVRDYVEERSGEDPLVKGIPED
::...:::: ::.::::::.::.::: :.:. :::: ::...:.::::::::::::::::
NP_004 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
10 20 30 40 50 60
70
pF1KE3 KNPFKELKGGCVIS
:::::: ::.::::
NP_004 KNPFKE-KGSCVIS
70
>>NP_001185685 (OMIM: 139391) guanine nucleotide-binding (69 aa)
initn: 292 init1: 260 opt: 294 Z-score: 388.5 bits: 75.8 E(85289): 6.7e-15
Smith-Waterman score: 294; 64.7% identity (86.8% similar) in 68 aa overlap (7-74:3-69)
10 20 30 40 50 60
pF1KE3 MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEVRDYVEERSGEDPLVKGIPED
.::.::: :::::.:::::: :. .:: .:...::: ..:.::..::::::
NP_001 MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPED
10 20 30 40 50
70
pF1KE3 KNPFKELKGGCVIS
:::::: ::::.::
NP_001 KNPFKE-KGGCLIS
60
>>NP_113686 (OMIM: 139391) guanine nucleotide-binding pr (69 aa)
initn: 292 init1: 260 opt: 294 Z-score: 388.5 bits: 75.8 E(85289): 6.7e-15
Smith-Waterman score: 294; 64.7% identity (86.8% similar) in 68 aa overlap (7-74:3-69)
10 20 30 40 50 60
pF1KE3 MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEVRDYVEERSGEDPLVKGIPED
.::.::: :::::.:::::: :. .:: .:...::: ..:.::..::::::
NP_113 MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPED
10 20 30 40 50
70
pF1KE3 KNPFKELKGGCVIS
:::::: ::::.::
NP_113 KNPFKE-KGGCLIS
60
>>NP_001185683 (OMIM: 139391) guanine nucleotide-binding (69 aa)
initn: 292 init1: 260 opt: 294 Z-score: 388.5 bits: 75.8 E(85289): 6.7e-15
Smith-Waterman score: 294; 64.7% identity (86.8% similar) in 68 aa overlap (7-74:3-69)
10 20 30 40 50 60
pF1KE3 MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEVRDYVEERSGEDPLVKGIPED
.::.::: :::::.:::::: :. .:: .:...::: ..:.::..::::::
NP_001 MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPED
10 20 30 40 50
70
pF1KE3 KNPFKELKGGCVIS
:::::: ::::.::
NP_001 KNPFKE-KGGCLIS
60
>>NP_001185684 (OMIM: 139391) guanine nucleotide-binding (69 aa)
initn: 292 init1: 260 opt: 294 Z-score: 388.5 bits: 75.8 E(85289): 6.7e-15
Smith-Waterman score: 294; 64.7% identity (86.8% similar) in 68 aa overlap (7-74:3-69)
10 20 30 40 50 60
pF1KE3 MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEVRDYVEERSGEDPLVKGIPED
.::.::: :::::.:::::: :. .:: .:...::: ..:.::..::::::
NP_001 MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPED
10 20 30 40 50
70
pF1KE3 KNPFKELKGGCVIS
:::::: ::::.::
NP_001 KNPFKE-KGGCLIS
60
>>NP_061329 (OMIM: 615405) guanine nucleotide-binding pr (72 aa)
initn: 155 init1: 144 opt: 158 Z-score: 216.3 bits: 44.0 E(85289): 2.6e-05
Smith-Waterman score: 158; 45.5% identity (74.5% similar) in 55 aa overlap (19-73:18-71)
10 20 30 40 50 60
pF1KE3 MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEVRDYVEERSGEDPLVKGIPED
:.::. :...::. ::: .. .: ::.. :::. ::: .
NP_061 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTS
10 20 30 40 50
70
pF1KE3 KNPFKELKGGCVIS
.::::. : :.:
NP_061 ENPFKD-KKTCIIL
60 70
>>XP_016857298 (OMIM: 615405) PREDICTED: guanine nucleot (72 aa)
initn: 155 init1: 144 opt: 158 Z-score: 216.3 bits: 44.0 E(85289): 2.6e-05
Smith-Waterman score: 158; 45.5% identity (74.5% similar) in 55 aa overlap (19-73:18-71)
10 20 30 40 50 60
pF1KE3 MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEVRDYVEERSGEDPLVKGIPED
:.::. :...::. ::: .. .: ::.. :::. ::: .
XP_016 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTS
10 20 30 40 50
70
pF1KE3 KNPFKELKGGCVIS
.::::. : :.:
XP_016 ENPFKD-KKTCIIL
60 70
>>XP_016857299 (OMIM: 615405) PREDICTED: guanine nucleot (72 aa)
initn: 155 init1: 144 opt: 158 Z-score: 216.3 bits: 44.0 E(85289): 2.6e-05
Smith-Waterman score: 158; 45.5% identity (74.5% similar) in 55 aa overlap (19-73:18-71)
10 20 30 40 50 60
pF1KE3 MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEVRDYVEERSGEDPLVKGIPED
:.::. :...::. ::: .. .: ::.. :::. ::: .
XP_016 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTS
10 20 30 40 50
70
pF1KE3 KNPFKELKGGCVIS
.::::. : :.:
XP_016 ENPFKD-KKTCIIL
60 70
74 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 00:18:17 2016 done: Mon Nov 7 00:18:18 2016
Total Scan time: 4.090 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]