Result of FASTA (ccds) for
pFN21AE3643
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3643, 197 aa
1>>>pF1KE3643 197 - 197 aa - 197 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3017+/-0.00062; mu= 13.9675+/- 0.038
mean_var=71.3091+/-14.798, 0's: 0 Z-trim(112.2): 64 B-trim: 720 in 1/50
Lambda= 0.151880
statistics sampled from 12918 (12987) to 12918 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.399), width: 16
Scan time: 2.170
The best scores are: opt bits E(32554)
CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1 ( 197) 1348 303.6 5.2e-83
CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 ( 152) 464 109.8 8.6e-25
CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 148) 433 103.0 9.3e-23
CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 147) 432 102.8 1.1e-22
CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 428 101.9 2e-22
CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 147) 426 101.5 2.7e-22
CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 ( 147) 424 101.0 3.6e-22
CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 149) 422 100.6 5e-22
CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 160) 400 95.8 1.5e-20
CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 193) 400 95.8 1.7e-20
CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 ( 201) 400 95.9 1.8e-20
CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 ( 207) 398 95.4 2.5e-20
CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 118) 388 93.1 7.2e-20
CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 118) 384 92.2 1.3e-19
CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4 ( 200) 381 91.7 3.2e-19
CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 109) 376 90.4 4.2e-19
CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 ( 152) 363 87.7 4e-18
CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX ( 152) 362 87.5 4.6e-18
CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 176) 351 85.1 2.8e-17
CCDS58796.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 122) 346 83.9 4.4e-17
CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 154) 347 84.2 4.5e-17
CCDS58795.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 212) 346 84.0 6.8e-17
CCDS47043.1 UBE2K gene_id:3093|Hs108|chr4 ( 157) 329 80.2 7.1e-16
CCDS13370.1 UBE2C gene_id:11065|Hs108|chr20 ( 179) 323 79.0 2e-15
CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX ( 119) 319 78.0 2.6e-15
CCDS7960.1 UBE2L6 gene_id:9246|Hs108|chr11 ( 153) 315 77.2 5.8e-15
CCDS33114.1 UBE2S gene_id:27338|Hs108|chr19 ( 222) 314 77.0 9.2e-15
CCDS13374.1 UBE2C gene_id:11065|Hs108|chr20 ( 140) 301 74.1 4.6e-14
CCDS10433.1 UBE2I gene_id:7329|Hs108|chr16 ( 158) 298 73.4 7.9e-14
CCDS5814.1 UBE2H gene_id:7328|Hs108|chr7 ( 183) 292 72.2 2.2e-13
CCDS11540.2 UBE2Z gene_id:65264|Hs108|chr17 ( 354) 285 70.8 1.1e-12
CCDS13372.1 UBE2C gene_id:11065|Hs108|chr20 ( 150) 269 67.1 6.2e-12
CCDS12987.1 UBE2M gene_id:9040|Hs108|chr19 ( 183) 264 66.0 1.6e-11
CCDS32532.1 UBE2G1 gene_id:7326|Hs108|chr17 ( 170) 256 64.3 4.9e-11
>>CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1 (197 aa)
initn: 1348 init1: 1348 opt: 1348 Z-score: 1603.8 bits: 303.6 E(32554): 5.2e-83
Smith-Waterman score: 1348; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197)
10 20 30 40 50 60
pF1KE3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 YPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 DDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEMLDNLPEAGDSRVHNSTQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEMLDNLPEAGDSRVHNSTQK
130 140 150 160 170 180
190
pF1KE3 RKASQLVGIEKKFHPDV
:::::::::::::::::
CCDS14 RKASQLVGIEKKFHPDV
190
>>CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 (152 aa)
initn: 451 init1: 294 opt: 464 Z-score: 558.6 bits: 109.8 E(32554): 8.6e-25
Smith-Waterman score: 464; 45.9% identity (71.9% similar) in 146 aa overlap (6-151:7-148)
10 20 30 40 50
pF1KE3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPE
:. .: . : .:: ::: :... ... : : ..:.: :.::::...::
CCDS31 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 RYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPN
.::. :..::.: :::::.:. ::::::.:: : :.:.: ::: ::: :.: ::
CCDS31 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILK----DKWSPALQIRTVLLSIQALLSAPN
70 80 90 100 110
120 130 140 150 160 170
pF1KE3 PDDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEMLDNLPEAGDSRVHNSTQ
::::: :.. ..: :. ...:: ::. .:
CCDS31 PDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI
120 130 140 150
180 190
pF1KE3 KRKASQLVGIEKKFHPDV
>>CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 (148 aa)
initn: 391 init1: 259 opt: 433 Z-score: 522.0 bits: 103.0 E(32554): 9.3e-23
Smith-Waterman score: 433; 43.8% identity (67.8% similar) in 146 aa overlap (6-151:5-146)
10 20 30 40 50 60
pF1KE3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPER
:...:: :: .:: . :.: .: :.: ..::. ::: : . .:
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 YPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP
:::.::.. : : ::::::.: : ::::.:. . : :.:.:. :: :: :. .:::
CCDS36 YPFKPPKVAFTTRIYHPNINSNGSICLDILR----SQWSPALTISKVLLSICSLLCDPNP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 DDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEMLDNLPEAGDSRVHNSTQK
::::. .:. .: .. . . ::.::::.:
CCDS36 DDPLVPEIARIYKTDRDKYNRLAREWTEKYAML
120 130 140
190
pF1KE3 RKASQLVGIEKKFHPDV
>>CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 (147 aa)
initn: 390 init1: 261 opt: 432 Z-score: 520.9 bits: 102.8 E(32554): 1.1e-22
Smith-Waterman score: 432; 43.2% identity (68.5% similar) in 146 aa overlap (6-151:5-146)
10 20 30 40 50 60
pF1KE3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPER
:...::. :: .:: . :.: .: :.: ..::. ::: : . .:
CCDS43 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 YPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP
:::.::.. : : ::::::.: : ::::.:. . : :.:.:. :: :: :. .:::
CCDS43 YPFKPPKVAFTTRIYHPNINSNGSICLDILR----SQWSPALTISKVLLSICSLLCDPNP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 DDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEMLDNLPEAGDSRVHNSTQK
::::. .:. .: .. . . ::.::.:.:
CCDS43 DDPLVPEIARIYKTDREKYNRIAREWTQKYAM
120 130 140
190
pF1KE3 RKASQLVGIEKKFHPDV
>>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa)
initn: 385 init1: 242 opt: 428 Z-score: 516.1 bits: 101.9 E(32554): 2e-22
Smith-Waterman score: 428; 43.2% identity (67.8% similar) in 146 aa overlap (6-151:5-146)
10 20 30 40 50 60
pF1KE3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPER
:...:: : .:: . :.. .: :.: .. :. ::: : : .:
CCDS72 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTD
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 YPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP
:::.::.: : : ::::::.: : ::::.:. . : :.:... :: :: :. .:::
CCDS72 YPFKPPKIAFTTKIYHPNINSNGSICLDILR----SQWSPALTVSKVLLSICSLLCDPNP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 DDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEMLDNLPEAGDSRVHNSTQK
::::. ::.. .: .: . ..::.::.:.:
CCDS72 DDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM
120 130 140
190
pF1KE3 RKASQLVGIEKKFHPDV
>>CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 (147 aa)
initn: 384 init1: 259 opt: 426 Z-score: 513.8 bits: 101.5 E(32554): 2.7e-22
Smith-Waterman score: 426; 42.5% identity (67.8% similar) in 146 aa overlap (6-151:5-146)
10 20 30 40 50 60
pF1KE3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPER
:...:: :: .:: . :.: .: :.: ..::. ::: : . .:
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 YPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP
:::.::.. : : ::::::.: : ::::.:. . : :.:.:. :: :: :. .:::
CCDS36 YPFKPPKVAFTTRIYHPNINSNGSICLDILR----SQWSPALTISKVLLSICSLLCDPNP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 DDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEMLDNLPEAGDSRVHNSTQK
::::. .:. .: .. . . .:.::.:.:
CCDS36 DDPLVPEIARIYKTDRDKYNRISREWTQKYAM
120 130 140
190
pF1KE3 RKASQLVGIEKKFHPDV
>>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 (147 aa)
initn: 381 init1: 250 opt: 424 Z-score: 511.4 bits: 101.0 E(32554): 3.6e-22
Smith-Waterman score: 424; 41.1% identity (67.1% similar) in 146 aa overlap (6-151:5-146)
10 20 30 40 50 60
pF1KE3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPER
:...:: : .:: . :.. .: :.: ..::. ::: : . .:
CCDS54 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTD
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 YPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP
:::.::.. : : ::::::.: : ::::.:. . : :.:... :: :: :. .:::
CCDS54 YPFKPPKVAFTTKIYHPNINSNGSICLDILR----SQWSPALTVSKVLLSICSLLCDPNP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 DDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEMLDNLPEAGDSRVHNSTQK
::::. .:. .: .. . . ::.::.:.:
CCDS54 DDPLVPEIAHTYKADREKYNRLAREWTQKYAM
120 130 140
190
pF1KE3 RKASQLVGIEKKFHPDV
>>CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 (149 aa)
initn: 384 init1: 259 opt: 422 Z-score: 508.9 bits: 100.6 E(32554): 5e-22
Smith-Waterman score: 422; 42.8% identity (67.6% similar) in 145 aa overlap (7-151:8-148)
10 20 30 40 50
pF1KE3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPE
:..:: :: .:: . :.: .: :.: ..::. ::: : . .:
CCDS36 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 RYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPN
:::.::.. : : ::::::.: : ::::.:. . : :.:.:. :: :: :. .::
CCDS36 DYPFKPPKVAFTTRIYHPNINSNGSICLDILR----SQWSPALTISKVLLSICSLLCDPN
70 80 90 100 110
120 130 140 150 160 170
pF1KE3 PDDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEMLDNLPEAGDSRVHNSTQ
:::::. .:. .: .. . . .:.::.:.:
CCDS36 PDDPLVPEIARIYKTDRDKYNRISREWTQKYAM
120 130 140
180 190
pF1KE3 KRKASQLVGIEKKFHPDV
>>CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 (160 aa)
initn: 371 init1: 261 opt: 400 Z-score: 482.4 bits: 95.8 E(32554): 1.5e-20
Smith-Waterman score: 400; 40.8% identity (68.7% similar) in 147 aa overlap (5-151:17-159)
10 20 30 40
pF1KE3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEK
::...:: .. .:::. . :.. . :. ::: .. ::
CCDS56 MKEVGRPREVRGRPGKSRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEG
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE3 GVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVL
::: :.. . .:::.::.. : : ::: ::.: : ::::.:: : :.:.:. ::
CCDS56 GVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILK----DNWSPALTISKVL
70 80 90 100 110
110 120 130 140 150 160
pF1KE3 TSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEMLDNLPE
:: :... :: :::...:.... :. . :::::...:
CCDS56 LSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT
120 130 140 150 160
170 180 190
pF1KE3 AGDSRVHNSTQKRKASQLVGIEKKFHPDV
>>CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 (193 aa)
initn: 371 init1: 261 opt: 400 Z-score: 481.3 bits: 95.8 E(32554): 1.7e-20
Smith-Waterman score: 400; 40.5% identity (68.9% similar) in 148 aa overlap (4-151:49-192)
10 20 30
pF1KE3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDD
:.:...:: .. .:::. . :.. .
CCDS26 NQQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYE
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE3 LRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLP
:. ::: .. :: ::: :.. . .:::.::.. : : ::: ::.: : ::::.::
CCDS26 WRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILK--
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE3 PKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQ
: :.:.:. :: :: :... :: :::...:.... :. . :::::...:
CCDS26 --DNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT
140 150 160 170 180 190
160 170 180 190
pF1KE3 KQKADEEEMLDNLPEAGDSRVHNSTQKRKASQLVGIEKKFHPDV
197 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:31:02 2016 done: Mon Nov 7 02:31:03 2016
Total Scan time: 2.170 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]