Result of FASTA (omim) for
pFN21AE3627
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3627, 114 aa
1>>>pF1KE3627 114 - 114 aa - 114 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.4639+/-0.000276; mu= 14.3658+/- 0.017
mean_var=52.0689+/-10.581, 0's: 0 Z-trim(118.5): 12 B-trim: 548 in 1/59
Lambda= 0.177740
statistics sampled from 31463 (31475) to 31463 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.369), width: 16
Scan time: 4.540
The best scores are: opt bits E(85289)
XP_016877166 (OMIM: 186960) PREDICTED: T-cell leuk ( 114) 800 212.0 1.7e-55
NP_068801 (OMIM: 186960) T-cell leukemia/lymphoma ( 114) 800 212.0 1.7e-55
XP_016877165 (OMIM: 186960) PREDICTED: T-cell leuk ( 114) 800 212.0 1.7e-55
NP_001092195 (OMIM: 186960) T-cell leukemia/lympho ( 114) 800 212.0 1.7e-55
NP_001018025 (OMIM: 300116) protein p13 MTCP-1 [Ho ( 107) 291 81.4 3.2e-16
NP_004909 (OMIM: 603769) T-cell leukemia/lymphoma ( 128) 177 52.3 2.3e-07
>>XP_016877166 (OMIM: 186960) PREDICTED: T-cell leukemia (114 aa)
initn: 800 init1: 800 opt: 800 Z-score: 1117.2 bits: 212.0 E(85289): 1.7e-55
Smith-Waterman score: 800; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)
10 20 30 40 50 60
pF1KE3 MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIKDRLQLRVLLRREDVVLGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIKDRLQLRVLLRREDVVLGR
10 20 30 40 50 60
70 80 90 100 110
pF1KE3 PMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDMLLELLPDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDMLLELLPDD
70 80 90 100 110
>>NP_068801 (OMIM: 186960) T-cell leukemia/lymphoma prot (114 aa)
initn: 800 init1: 800 opt: 800 Z-score: 1117.2 bits: 212.0 E(85289): 1.7e-55
Smith-Waterman score: 800; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)
10 20 30 40 50 60
pF1KE3 MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIKDRLQLRVLLRREDVVLGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIKDRLQLRVLLRREDVVLGR
10 20 30 40 50 60
70 80 90 100 110
pF1KE3 PMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDMLLELLPDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 PMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDMLLELLPDD
70 80 90 100 110
>>XP_016877165 (OMIM: 186960) PREDICTED: T-cell leukemia (114 aa)
initn: 800 init1: 800 opt: 800 Z-score: 1117.2 bits: 212.0 E(85289): 1.7e-55
Smith-Waterman score: 800; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)
10 20 30 40 50 60
pF1KE3 MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIKDRLQLRVLLRREDVVLGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIKDRLQLRVLLRREDVVLGR
10 20 30 40 50 60
70 80 90 100 110
pF1KE3 PMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDMLLELLPDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDMLLELLPDD
70 80 90 100 110
>>NP_001092195 (OMIM: 186960) T-cell leukemia/lymphoma p (114 aa)
initn: 800 init1: 800 opt: 800 Z-score: 1117.2 bits: 212.0 E(85289): 1.7e-55
Smith-Waterman score: 800; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)
10 20 30 40 50 60
pF1KE3 MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIKDRLQLRVLLRREDVVLGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIKDRLQLRVLLRREDVVLGR
10 20 30 40 50 60
70 80 90 100 110
pF1KE3 PMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDMLLELLPDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDMLLELLPDD
70 80 90 100 110
>>NP_001018025 (OMIM: 300116) protein p13 MTCP-1 [Homo s (107 aa)
initn: 216 init1: 216 opt: 291 Z-score: 412.2 bits: 81.4 E(85289): 3.2e-16
Smith-Waterman score: 291; 40.2% identity (71.0% similar) in 107 aa overlap (8-114:3-107)
10 20 30 40 50 60
pF1KE3 MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIKDRLQLRVLLRREDVVLGR
:: : ::.::. .. .: :: :..:. .. : . :. :: .. .: ::
NP_001 MAGEDVGAPPDHLWVHQEGIYRDEYQRTWVAVVEEETSFLRARV--QQIQVPLGD
10 20 30 40 50
70 80 90 100 110
pF1KE3 PMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDMLLELLPDD
:... : ::.::::::. :: ...: .:.. .:. . ::...::.:::::
NP_001 AARPSHLLTSQLPLMWQLYPEERYMDNNSRLWQIQHHLMVRGVQELLLKLLPDD
60 70 80 90 100
>>NP_004909 (OMIM: 603769) T-cell leukemia/lymphoma prot (128 aa)
initn: 232 init1: 161 opt: 177 Z-score: 253.1 bits: 52.3 E(85289): 2.3e-07
Smith-Waterman score: 195; 30.1% identity (60.2% similar) in 113 aa overlap (15-113:13-125)
10 20 30 40
pF1KE3 MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIK------------DRLQ--
: ::: . .: ::. ..:. ...... .: .
NP_004 MASEASVRLGVPPGRLWIQRPGIYEDEEGRTWVTVVVRFNPSRREWARASQGSRYEPS
10 20 30 40 50
50 60 70 80 90 100
pF1KE3 LRVLLRREDVVLGRPMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDM
. : : . : . .. :. : :: .::::: .::..:::::... : .::..:..
NP_004 ITVHLWQMAVHTRELLSSGQMPFSQLPAVWQLYPGRKYRAADSSFWEIADHGQIDSMEQL
60 70 80 90 100 110
110
pF1KE3 LLELLPDD
.: :.
NP_004 VLTYQPERKD
120
114 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 20:13:54 2016 done: Sun Nov 6 20:13:54 2016
Total Scan time: 4.540 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]