FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3623, 148 aa
  1>>>pF1KE3623 148 - 148 aa - 148 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.3592+/-0.000602; mu= 16.9400+/- 0.036
 mean_var=59.9561+/-11.848, 0's: 0 Z-trim(112.4): 12  B-trim: 0 in 0/49
 Lambda= 0.165637
 statistics sampled from 13196 (13203) to 13196 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.406), width:  16
 Scan time:  1.730

The best scores are:                                      opt bits E(32554)
CCDS5503.1 RAMP3 gene_id:10268|Hs108|chr7          ( 148) 1044 256.8 3.6e-69
CCDS2522.1 RAMP1 gene_id:10267|Hs108|chr2          ( 148)  297 78.3   2e-15
CCDS77546.1 RAMP1 gene_id:10267|Hs108|chr2         ( 126)  294 77.5 2.9e-15
CCDS11437.1 RAMP2 gene_id:10266|Hs108|chr17        ( 175)  248 66.6 7.4e-12


>>CCDS5503.1 RAMP3 gene_id:10268|Hs108|chr7               (148 aa)
 initn: 1044 init1: 1044 opt: 1044  Z-score: 1355.3  bits: 256.8 E(32554): 3.6e-69
Smith-Waterman score: 1044; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148)

               10        20        30        40        50        60
pF1KE3 METGALRRPQLLPLLLLLCGGCPRAGGCNETGMLERLPLCGKAFADMMGKVDVWKWCNLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 METGALRRPQLLPLLLLLCGGCPRAGGCNETGMLERLPLCGKAFADMMGKVDVWKWCNLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 EFIVYYESFTNCTEMEANVVGCYWPNPLAQGFITGIHRQFFSNCTVDRVHLEDPPDEVLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EFIVYYESFTNCTEMEANVVGCYWPNPLAQGFITGIHRQFFSNCTVDRVHLEDPPDEVLI
               70        80        90       100       110       120

              130       140        
pF1KE3 PLIVIPVVLTVAMAGLVVWRSKRTDTLL
       ::::::::::::::::::::::::::::
CCDS55 PLIVIPVVLTVAMAGLVVWRSKRTDTLL
              130       140        

>>CCDS2522.1 RAMP1 gene_id:10267|Hs108|chr2               (148 aa)
 initn: 300 init1: 286 opt: 297  Z-score: 390.6  bits: 78.3 E(32554): 2e-15
Smith-Waterman score: 297; 34.3% identity (63.5% similar) in 137 aa overlap (14-148:13-148)

               10        20        30          40        50        
pF1KE3 METGALRRPQLLPLLLLLCGGCPRAGGCNET--GMLERLPLCGKAFADMMGKVDVWKWCN
                    : :::      . .:.:.  : : :  ::   :   :  :    ::.
CCDS25  MARALCRLPRRGLWLLLAHHLFMTTACQEANYGALLR-ELCLTQFQVDMEAVGETLWCD
                10        20        30         40        50        

       60        70        80        90       100       110        
pF1KE3 LSEFIVYYESFTNCTEMEANVVGCYWPNPLAQGFITGIHRQFFSNCTVDRVHLEDPPDEV
        .. :  :. ...::   :. .::.:::  .. :. ..: ..: .: ..   ..:::  .
CCDS25 WGRTIRSYRELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSI
       60        70        80        90       100       110        

      120       130       140        
pF1KE3 LIPLIVIPVVLTVAMAGLVVWRSKRTDTLL
       : :.::.:...:. ...::::.::::. ..
CCDS25 LYPFIVVPITVTLLVTALVVWQSKRTEGIV
      120       130       140        

>>CCDS77546.1 RAMP1 gene_id:10267|Hs108|chr2              (126 aa)
 initn: 300 init1: 286 opt: 294  Z-score: 387.6  bits: 77.5 E(32554): 2.9e-15
Smith-Waterman score: 294; 35.0% identity (65.9% similar) in 123 aa overlap (28-148:5-126)

               10        20        30          40        50        
pF1KE3 METGALRRPQLLPLLLLLCGGCPRAGGCNET--GMLERLPLCGKAFADMMGKVDVWKWCN
                                  :.:.  : : :  ::   :   :  :    ::.
CCDS77                        MTTACQEANYGALLR-ELCLTQFQVDMEAVGETLWCD
                                      10         20        30      

       60        70        80        90       100       110        
pF1KE3 LSEFIVYYESFTNCTEMEANVVGCYWPNPLAQGFITGIHRQFFSNCTVDRVHLEDPPDEV
        .. :  :. ...::   :. .::.:::  .. :. ..: ..: .: ..   ..:::  .
CCDS77 WGRTIRSYRELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSI
         40        50        60        70        80        90      

      120       130       140        
pF1KE3 LIPLIVIPVVLTVAMAGLVVWRSKRTDTLL
       : :.::.:...:. ...::::.::::. ..
CCDS77 LYPFIVVPITVTLLVTALVVWQSKRTEGIV
        100       110       120      

>>CCDS11437.1 RAMP2 gene_id:10266|Hs108|chr17             (175 aa)
 initn: 285 init1: 224 opt: 248  Z-score: 326.4  bits: 66.6 E(32554): 7.4e-12
Smith-Waterman score: 248; 28.9% identity (56.3% similar) in 142 aa overlap (4-145:32-172)

                                          10        20        30   
pF1KE3                            METGALRRPQLLPLLLLLCGGCPRAGGCNETGM
                                     ::.  :.      :   : : . : .  ..
CCDS11 ASLRVERAGGPRLPRTRVGRPAALRLLLLLGAVLNPHEALAQPLPTTGTPGSEGGTVKNY
              10        20        30        40        50        60 

            40        50        60        70        80        90   
pF1KE3 LERLPLCGKAFADMMGKVDVWKWCNLSEFIVYYESFTNCTEMEANVVGCYWPNPLAQGFI
          . .: . . :.:  ..   ::. . .   : .. .: :  :..    .:::::. .:
CCDS11 ETAVQFCWNHYKDQMDPIEK-DWCDWAMISRPYSTLRDCLEHFAELFDLGFPNPLAERII
              70        80         90       100       110       120

           100       110       120       130       140        
pF1KE3 TGIHRQFFSNCTVDRVHLEDPPDEVLIPLIVIPVVLTVAMAGLVVWRSKRTDTLL
          :.  :.::.. .  . :::..::. .:. :. :   .  ::::::: ..   
CCDS11 FETHQIHFANCSLVQPTFSDPPEDVLLAMIIAPICLIPFLITLVVWRSKDSEAQA
              130       140       150       160       170     




148 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:43:06 2016 done: Sun Nov  6 22:43:06 2016
 Total Scan time:  1.730 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]